ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast27b12 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X15869.1|HVNADPHP Barley mRNA for NADPH-protochlorophyllide oxidoreductase (PCR) Length = 1490 Score = 383 bits (193), Expect = e-103 Identities = 225/238 (94%) Strand = Plus / Minus Query: 1 gcactttcgcggccactcgcaaggcctttcctgcgtaattgagcttctaaaaaggcgtaa 60 ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1414 gcactctcgcggccactcgcaaggcctctcctgcgtaattgagcttctaaaaaggcgtaa 1355 Query: 61 acatgataattaccaaataagtttnnnnnnncgacaagttgagcatcggccggcgtccta 120 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1354 acatgataattaccaaataagtttaaaaaaacgacaagttgagcatcggccggcgtccta 1295 Query: 121 aatgcatgcatgcatccatgggatttgcgggggatcatgcgagtccgacgagcttctcgc 180 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1294 gatgcatgcatgcatccatgggatttgcggtggatcatgcgagtccgacgagcttctcgc 1235 Query: 181 tgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgggagagctggtt 238 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1234 tgagctcccagaccttgcgggccttctcggggtcgctggcctcctgggagagctggtt 1177
>emb|X76532.1|TAPWR5PI Triticum aestivium pWR5 RNA for protochlorophyilide reductase Length = 1484 Score = 139 bits (70), Expect = 4e-30 Identities = 82/86 (95%) Strand = Plus / Minus Query: 153 gatcatgcgagtccgacgagcttctcgctgagctcccaaaccttgcgggccttttcgggg 212 ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 1241 gatcaggcgagtccgacgagcttctcgctgagctcccagaccttgcgggccttctcgggg 1182 Query: 213 tcgctggcctcctgggagagctggtt 238 |||||||||||||| ||||||||||| Sbjct: 1181 tcgctggcctcctgtgagagctggtt 1156 Score = 95.6 bits (48), Expect = 6e-17 Identities = 69/76 (90%) Strand = Plus / Minus Query: 1 gcactttcgcggccactcgcaaggcctttcctgcgtaattgagcttctaaaaaggcgtaa 60 ||||| |||| | |||||||||||||| ||| ||||||||||| |||||||||||||||| Sbjct: 1399 gcactctcgccgacactcgcaaggcctctcccgcgtaattgagtttctaaaaaggcgtaa 1340 Query: 61 acatgataattaccaa 76 | |||||||||||||| Sbjct: 1339 aaatgataattaccaa 1324
>emb|X17067.1|ASPCR Avena sativa mRNA for protochlorophyllide reductase Length = 1146 Score = 121 bits (61), Expect = 1e-24 Identities = 79/85 (92%) Strand = Plus / Minus Query: 154 atcatgcgagtccgacgagcttctcgctgagctcccaaaccttgcgggccttttcggggt 213 |||| |||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||| Sbjct: 945 atcaggcgagtccgacgagcttctcactgagctcccagaccttgcgcgccttctcggggt 886 Query: 214 cgctggcctcctgggagagctggtt 238 ||||||||||||| ||||||||||| Sbjct: 885 cgctggcctcctgagagagctggtt 861
>emb|X84738.1|HVNADPHPO H.vulgare mRNA for NADPH-protochlorophyllide oxidoreductase Length = 1345 Score = 115 bits (58), Expect = 6e-23 Identities = 79/86 (91%) Strand = Plus / Minus Query: 153 gatcatgcgagtccgacgagcttctcgctgagctcccaaaccttgcgggccttttcgggg 212 ||||||||||| |||||||||||||||||||||||||| ||||| | |||||| |||| | Sbjct: 1244 gatcatgcgagcccgacgagcttctcgctgagctcccagaccttcctggccttctcggtg 1185 Query: 213 tcgctggcctcctgggagagctggtt 238 ||||||||||||| |||||||||||| Sbjct: 1184 tcgctggcctcctcggagagctggtt 1159
>emb|AL732349.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0402C08, complete sequence Length = 100836 Score = 87.7 bits (44), Expect = 1e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 159 gcgagtccgacgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctg 218 ||||| |||||||||||||||||||| ||||| | ||| | |||||| || ||||||||| Sbjct: 97464 gcgaggccgacgagcttctcgctgaggtcccagagcttcctggccttctccgggtcgctg 97405 Query: 219 gcctcctgggagagctggtt 238 |||||||| ||||||||||| Sbjct: 97404 gcctcctgcgagagctggtt 97385
>emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0801D08, complete sequence Length = 103264 Score = 87.7 bits (44), Expect = 1e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 159 gcgagtccgacgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctg 218 ||||| |||||||||||||||||||| ||||| | ||| | |||||| || ||||||||| Sbjct: 42560 gcgaggccgacgagcttctcgctgaggtcccagagcttcctggccttctccgggtcgctg 42501 Query: 219 gcctcctgggagagctggtt 238 |||||||| ||||||||||| Sbjct: 42500 gcctcctgcgagagctggtt 42481
>ref|XM_474360.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1164 Score = 85.7 bits (43), Expect = 6e-14 Identities = 70/79 (88%) Strand = Plus / Minus Query: 160 cgagtccgacgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctgg 219 |||| |||||||||||||||||||| ||||| | ||| | |||||| || |||||||||| Sbjct: 1159 cgaggccgacgagcttctcgctgaggtcccagagcttcctggccttctccgggtcgctgg 1100 Query: 220 cctcctgggagagctggtt 238 ||||||| ||||||||||| Sbjct: 1099 cctcctgcgagagctggtt 1081
>emb|AL606456.2|OSJN00017 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0017I01, complete sequence Length = 133331 Score = 85.7 bits (43), Expect = 6e-14 Identities = 70/79 (88%) Strand = Plus / Minus Query: 160 cgagtccgacgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctgg 219 |||| |||||||||||||||||||| ||||| | ||| | |||||| || |||||||||| Sbjct: 5101 cgaggccgacgagcttctcgctgaggtcccagagcttcctggccttctccgggtcgctgg 5042 Query: 220 cctcctgggagagctggtt 238 ||||||| ||||||||||| Sbjct: 5041 cctcctgcgagagctggtt 5023
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 85.7 bits (43), Expect = 6e-14 Identities = 70/79 (88%) Strand = Plus / Minus Query: 160 cgagtccgacgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctgg 219 |||| |||||||||||||||||||| ||||| | ||| | |||||| || |||||||||| Sbjct: 34699539 cgaggccgacgagcttctcgctgaggtcccagagcttcctggccttctccgggtcgctgg 34699480 Query: 220 cctcctgggagagctggtt 238 ||||||| ||||||||||| Sbjct: 34699479 cctcctgcgagagctggtt 34699461
>dbj|AK104855.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-B11, full insert sequence Length = 1384 Score = 85.7 bits (43), Expect = 6e-14 Identities = 70/79 (88%) Strand = Plus / Minus Query: 160 cgagtccgacgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctgg 219 |||| |||||||||||||||||||| ||||| | ||| | |||||| || |||||||||| Sbjct: 1231 cgaggccgacgagcttctcgctgaggtcccagagcttcctggccttctccgggtcgctgg 1172 Query: 220 cctcctgggagagctggtt 238 ||||||| ||||||||||| Sbjct: 1171 cctcctgcgagagctggtt 1153
>dbj|AK103943.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G12, full insert sequence Length = 1384 Score = 85.7 bits (43), Expect = 6e-14 Identities = 70/79 (88%) Strand = Plus / Minus Query: 160 cgagtccgacgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctgg 219 |||| |||||||||||||||||||| ||||| | ||| | |||||| || |||||||||| Sbjct: 1231 cgaggccgacgagcttctcgctgaggtcccagagcttcctggccttctccgggtcgctgg 1172 Query: 220 cctcctgggagagctggtt 238 ||||||| ||||||||||| Sbjct: 1171 cctcctgcgagagctggtt 1153
>dbj|AK103940.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G08, full insert sequence Length = 1384 Score = 85.7 bits (43), Expect = 6e-14 Identities = 70/79 (88%) Strand = Plus / Minus Query: 160 cgagtccgacgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctgg 219 |||| |||||||||||||||||||| ||||| | ||| | |||||| || |||||||||| Sbjct: 1231 cgaggccgacgagcttctcgctgaggtcccagagcttcctggccttctccgggtcgctgg 1172 Query: 220 cctcctgggagagctggtt 238 ||||||| ||||||||||| Sbjct: 1171 cctcctgcgagagctggtt 1153
>dbj|AK065236.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002H23, full insert sequence Length = 1385 Score = 85.7 bits (43), Expect = 6e-14 Identities = 70/79 (88%) Strand = Plus / Minus Query: 160 cgagtccgacgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctgg 219 |||| |||||||||||||||||||| ||||| | ||| | |||||| || |||||||||| Sbjct: 1232 cgaggccgacgagcttctcgctgaggtcccagagcttcctggccttctccgggtcgctgg 1173 Query: 220 cctcctgggagagctggtt 238 ||||||| ||||||||||| Sbjct: 1172 cctcctgcgagagctggtt 1154
>ref|NM_197169.1| Oryza sativa (japonica cultivar-group) putative dehydrogenase (OSJNBa0017E08.8), mRNA Length = 1564 Score = 67.9 bits (34), Expect = 1e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 165 ccgacgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcc 224 |||||||||||||||||||||||||| ||||| |||||| || || ||| ||||||| Sbjct: 1258 ccgacgagcttctcgctgagctcccagaccttcttggccttctccggatcggaggcctcc 1199 Query: 225 tgggagagctggtt 238 | |||||||||||| Sbjct: 1198 tcggagagctggtt 1185
>gb|AC068923.12| Oryza sativa chromosome 10 BAC OSJNBa0017E08 genomic sequence, complete sequence Length = 136120 Score = 67.9 bits (34), Expect = 1e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 165 ccgacgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcc 224 |||||||||||||||||||||||||| ||||| |||||| || || ||| ||||||| Sbjct: 119147 ccgacgagcttctcgctgagctcccagaccttcttggccttctccggatcggaggcctcc 119206 Query: 225 tgggagagctggtt 238 | |||||||||||| Sbjct: 119207 tcggagagctggtt 119220
>emb|AJ567760.1|ZMA567760 Zea mays partial mRNA for NADPH-protochlorophyllide oxidoreductase (por gene) Length = 1116 Score = 67.9 bits (34), Expect = 1e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 165 ccgacgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcc 224 ||||||||||||||||||| |||||| | ||| |||||| |||| ||||||||||||| Sbjct: 1106 ccgacgagcttctcgctgatctcccagagcttcttggccttgtcggcgtcgctggcctcc 1047 Query: 225 tgggagagctggtt 238 | ||||||||||| Sbjct: 1046 tcagagagctggtt 1033
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 67.9 bits (34), Expect = 1e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 165 ccgacgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcc 224 |||||||||||||||||||||||||| ||||| |||||| || || ||| ||||||| Sbjct: 18387546 ccgacgagcttctcgctgagctcccagaccttcttggccttctccggatcggaggcctcc 18387487 Query: 225 tgggagagctggtt 238 | |||||||||||| Sbjct: 18387486 tcggagagctggtt 18387473
>dbj|AK068143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134C06, full insert sequence Length = 2944 Score = 67.9 bits (34), Expect = 1e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 165 ccgacgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcc 224 |||||||||||||||||||||||||| ||||| |||||| || || ||| ||||||| Sbjct: 2458 ccgacgagcttctcgctgagctcccagaccttcttggccttctccggatcggaggcctcc 2399 Query: 225 tgggagagctggtt 238 | |||||||||||| Sbjct: 2398 tcggagagctggtt 2385
>gb|AY103784.1| Zea mays PCO066646 mRNA sequence Length = 1664 Score = 67.9 bits (34), Expect = 1e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 165 ccgacgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcc 224 ||||||||||||||||||| |||||| | ||| |||||| |||| ||||||||||||| Sbjct: 1288 ccgacgagcttctcgctgatctcccagagcttcttggccttgtcggcgtcgctggcctcc 1229 Query: 225 tgggagagctggtt 238 | ||||||||||| Sbjct: 1228 tcagagagctggtt 1215
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 67.9 bits (34), Expect = 1e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 165 ccgacgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcc 224 |||||||||||||||||||||||||| ||||| |||||| || || ||| ||||||| Sbjct: 18397599 ccgacgagcttctcgctgagctcccagaccttcttggccttctccggatcggaggcctcc 18397540 Query: 225 tgggagagctggtt 238 | |||||||||||| Sbjct: 18397539 tcggagagctggtt 18397526
>gb|AF496822.1| Zea mays cultivar C_9 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 136 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 135 gacagctggtt 125
>gb|AF496821.1| Zea mays cultivar D_9 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 363 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 193 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 134 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 133 gacagctggtt 123
>gb|AF496820.1| Zea mays cultivar D_6 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 136 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 135 gacagctggtt 125
>gb|AF496819.1| Zea mays cultivar F_1 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 136 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 135 gacagctggtt 125
>gb|AF496818.1| Zea mays cultivar Mo17 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 136 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 135 gacagctggtt 125
>gb|AF496817.1| Zea mays cultivar D_7 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 136 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 135 gacagctggtt 125
>gb|AF496816.1| Zea mays cultivar TX601 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 136 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 135 gacagctggtt 125
>gb|AF496815.1| Zea mays cultivar B84 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 352 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 185 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 126 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 125 gacagctggtt 115
>gb|AF496814.1| Zea mays cultivar H60 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 340 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 170 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 111 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 110 gacagctggtt 100
>gb|AF496813.1| Zea mays cultivar DE811 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 355 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 185 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 126 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 125 gacagctggtt 115
>gb|AF496812.1| Zea mays cultivar 684 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 136 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 135 gacagctggtt 125
>gb|AF496811.1| Zea mays cultivar D71-4HT protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 355 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 185 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 126 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 125 gacagctggtt 115
>gb|AF496810.1| Zea mays cultivar H99 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 299 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 164 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 105 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 104 gacagctggtt 94
>gb|AF496809.1| Zea mays cultivar IVANA protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 136 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 135 gacagctggtt 125
>gb|AF496808.1| Zea mays cultivar CO109 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 361 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 191 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 132 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 131 gacagctggtt 121
>gb|AF496807.1| Zea mays cultivar I_1 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 356 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 186 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 127 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 126 gacagctggtt 116
>gb|AF496806.1| Zea mays cultivar B73 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 136 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 135 gacagctggtt 125
>gb|AF496805.1| Zea mays cultivar F_2 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 136 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 135 gacagctggtt 125
>gb|AF496804.1| Zea mays cultivar G_1 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 368 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 136 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 135 gacagctggtt 125
>gb|AF496803.1| Zea mays cultivar B_6 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 136 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 135 gacagctggtt 125
>gb|AF496802.1| Zea mays cultivar H_4 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 136 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 135 gacagctggtt 125
>gb|AF496801.1| Zea mays cultivar F_4 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 355 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 185 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 126 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 125 gacagctggtt 115
>gb|AF496800.1| Zea mays cultivar F_3 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 136 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 135 gacagctggtt 125
>gb|AF496799.1| Zea mays cultivar F_5 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 363 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 193 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 134 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 133 gacagctggtt 123
>gb|AF496798.1| Zea mays cultivar H_5 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 136 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 135 gacagctggtt 125
>gb|AF496797.1| Zea mays cultivar H_3 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 364 Score = 54.0 bits (27), Expect = 2e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctg 226 |||||||||||||||| |||||| | ||| |||||| || ||||||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccgggtcgctggcctcctg 137
>gb|AF496796.1| Zea mays cultivar J40 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 136 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 135 gacagctggtt 125
>gb|AF496795.1| Zea mays cultivar 647 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 136 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 135 gacagctggtt 125
>gb|AF496794.1| Zea mays cultivar B_1 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 136 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 135 gacagctggtt 125
>gb|AF496793.1| Zea mays cultivar F_6 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 136 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 135 gacagctggtt 125
>gb|AF496792.1| Zea mays cultivar C_5 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 136 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 135 gacagctggtt 125
>gb|AF496791.1| Zea mays cultivar H_1 protochlorophyllide reductase precursor-like protein gene, 3'UTR and partial cds Length = 365 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 195 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 136 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 135 gacagctggtt 125
>gb|AY106314.1| Zea mays PCO151862 mRNA sequence Length = 1009 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 168 acgagcttctcgctgagctcccaaaccttgcgggccttttcggggtcgctggcctcctgg 227 |||||||||||||||| |||||| | ||| |||||| || || |||||||||||||| Sbjct: 725 acgagcttctcgctgatctcccagagcttcttggccttctccggatcgctggcctcctgc 666 Query: 228 gagagctggtt 238 || |||||||| Sbjct: 665 gacagctggtt 655
>gb|AC104358.4| Homo sapiens chromosome 8, clone RP11-151L10, complete sequence Length = 174055 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Minus Query: 122 atgcatgcatgcatccatggga 143 |||||||||||||||||||||| Sbjct: 139457 atgcatgcatgcatccatggga 139436
>dbj|AP002089.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1100B9 Length = 151959 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Minus Query: 122 atgcatgcatgcatccatggga 143 |||||||||||||||||||||| Sbjct: 53965 atgcatgcatgcatccatggga 53944
>dbj|AP005622.3| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1016F12, complete sequence Length = 200738 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Minus Query: 122 atgcatgcatgcatccatggga 143 |||||||||||||||||||||| Sbjct: 128594 atgcatgcatgcatccatggga 128573
>gb|AC130675.7| Mus musculus chromosome 8, clone RP23-167D18, complete sequence Length = 193579 Score = 42.1 bits (21), Expect = 0.77 Identities = 21/21 (100%) Strand = Plus / Minus Query: 59 aaacatgataattaccaaata 79 ||||||||||||||||||||| Sbjct: 126070 aaacatgataattaccaaata 126050
>gb|AY733961.1| Macaca mulatta isolate rq2277-10p14 MLV-derived vector proviral integration site Length = 362 Score = 42.1 bits (21), Expect = 0.77 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 taaatgcatgcatgcatccat 139 ||||||||||||||||||||| Sbjct: 266 taaatgcatgcatgcatccat 246
>gb|AC133169.3| Mus musculus BAC clone RP24-259I15 from 9, complete sequence Length = 163930 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Minus Query: 116 tcctaaatgcatgcatgcatccatg 140 ||||||| ||||||||||||||||| Sbjct: 142851 tcctaaaagcatgcatgcatccatg 142827
>emb|AL845490.8| Mouse DNA sequence from clone RP23-259M16 on chromosome 2, complete sequence Length = 200794 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 116 tcctaaatgcatgcatgcatccatg 140 |||||||||||||||||||| |||| Sbjct: 118465 tcctaaatgcatgcatgcatgcatg 118489
>gb|BC079655.1| Mus musculus cDNA clone IMAGE:6854812 Length = 4411 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 atgcatgcatgcatccatgg 141 |||||||||||||||||||| Sbjct: 1039 atgcatgcatgcatccatgg 1058
>ref|XM_617927.2| PREDICTED: Bos taurus similar to F-box only protein 28, transcript variant 1 (LOC537745), mRNA Length = 2928 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 aatgcatgcatgcatccatg 140 |||||||||||||||||||| Sbjct: 1809 aatgcatgcatgcatccatg 1790
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 gcgggccttttcggggtcgc 216 |||||||||||||||||||| Sbjct: 998535 gcgggccttttcggggtcgc 998554
>gb|BT012732.1| Lycopersicon esculentum clone 113661F, mRNA sequence Length = 1610 Score = 40.1 bits (20), Expect = 3.1 Identities = 38/44 (86%) Strand = Plus / Minus Query: 162 agtccgacgagcttctcgctgagctcccaaaccttgcgggcctt 205 ||||| ||||||||||| |||| |||||| | |||||| ||||| Sbjct: 1277 agtccaacgagcttctcactgacctcccatagcttgcgtgcctt 1234
>gb|AC125152.5| Mus musculus BAC clone RP24-366J2 from chromosome 14, complete sequence Length = 134122 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aaatgcatgcatgcatccat 139 |||||||||||||||||||| Sbjct: 82801 aaatgcatgcatgcatccat 82782
>emb|BX950203.15| Zebrafish DNA sequence from clone CH211-108P22, complete sequence Length = 129504 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 aatgcatgcatgcatccatg 140 |||||||||||||||||||| Sbjct: 61533 aatgcatgcatgcatccatg 61552
>gb|AF126871.2|AF126871 Vigna radiata NADPH-protochlorophyllide oxidoreductase mRNA, chloroplast gene encoding chloroplast protein, complete cds Length = 1601 Score = 40.1 bits (20), Expect = 3.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 174 ttctcgctgagctcccaaaccttgcgggcctt 205 ||||| |||| ||||||||||||||| ||||| Sbjct: 1358 ttctcactgatctcccaaaccttgcgagcctt 1327
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 gagcttctcgctgagctccc 189 |||||||||||||||||||| Sbjct: 1409370 gagcttctcgctgagctccc 1409389
>gb|AF279251.1|AF279251 Vigna radiata NADPH-protochlorophyllide oxidoreductase (CipPor) mRNA, complete cds; nuclear gene for chloroplast product Length = 1488 Score = 40.1 bits (20), Expect = 3.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 174 ttctcgctgagctcccaaaccttgcgggcctt 205 ||||| |||| ||||||||||||||| ||||| Sbjct: 1245 ttctcactgatctcccaaaccttgcgagcctt 1214
>gb|AF243522.1|AF243522 Lycopersicon esculentum light dependent NADH:protochlorophyllide oxidoreductase 2 mRNA, partial cds Length = 1004 Score = 40.1 bits (20), Expect = 3.1 Identities = 38/44 (86%) Strand = Plus / Minus Query: 162 agtccgacgagcttctcgctgagctcccaaaccttgcgggcctt 205 ||||| ||||||||||| |||| |||||| | |||||| ||||| Sbjct: 839 agtccaacgagcttctcactgacctcccatagcttgcgtgcctt 796
>gb|AY789611.1| Chrysopogon fulvus voucher PI199241 USDA FL gene, partial cds Length = 947 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 cctaaatgcatgcatgcatccatg 140 ||||||||||||||||||| |||| Sbjct: 476 cctaaatgcatgcatgcatgcatg 499
>emb|AL669956.10| Mouse DNA sequence from clone RP23-222I1 on chromosome X, complete sequence Length = 199434 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 atgcatgcatgcatccatgg 141 |||||||||||||||||||| Sbjct: 19812 atgcatgcatgcatccatgg 19793
>dbj|AB005556.1| Plectonema boryanum DNA for NADPH:protochlorophyllide oxidoreductase, hypothetical protein, partial and complete cds Length = 2131 Score = 40.1 bits (20), Expect = 3.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 159 gcgagtccgacgagcttctcgctgagctccca 190 |||||||| |||||||||||||| | |||||| Sbjct: 2030 gcgagtccaacgagcttctcgctcaactccca 1999 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,478,065 Number of Sequences: 3902068 Number of extensions: 1478065 Number of successful extensions: 46459 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46229 Number of HSP's gapped (non-prelim): 221 length of query: 238 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 216 effective length of database: 17,147,199,772 effective search space: 3703795150752 effective search space used: 3703795150752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
