ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast26b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CP007_MOUSE (Q8C190) Protein C16orf7 homolog (5-day ovary-specif... 31 0.66
2MA2B1_CAVPO (Q8VHC8) Lysosomal alpha-mannosidase precursor (EC 3... 30 1.9
3T2E7_ECOLI (P50194) Type II restriction enzyme Eco47I (EC 3.1.21... 29 3.3
4RL18_PARUW (Q6ME48) 50S ribosomal protein L18 29 3.3
5TPO_CANFA (P42705) Thrombopoietin precursor (Megakaryocyte colon... 29 3.3
6GHRL_CARAU (Q8AUU1) Ghrelin precursor [Contains: Ghrelin-12; Ghr... 28 4.3
7Y638_HAEIN (P44796) UPF0274 protein HI0638 28 7.3
8FYB_HUMAN (O15117) FYN-binding protein (FYN-T-binding protein) (... 27 9.5
9MTG8R_XENLA (Q9IAB2) Protein CBFA2T2 (MTG8-like protein) (MTG8-r... 27 9.5
10RNZ_CHLAB (Q5L6G2) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNa... 27 9.5
11AGNY_APLSP (P12285) Neuroactive polyprotein R15-2 precursor [Con... 27 9.5

>CP007_MOUSE (Q8C190) Protein C16orf7 homolog (5-day ovary-specific transcript 1|
           protein)
          Length = 649

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = +3

Query: 75  PTVPALPSSPLCISIHRRACTVQ----CKLLPPE 164
           P VPA P +PL  S HRR C+ +       LPPE
Sbjct: 96  PAVPAAPPTPLPTSRHRRVCSDEGGKLSPFLPPE 129



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>MA2B1_CAVPO (Q8VHC8) Lysosomal alpha-mannosidase precursor (EC 3.2.1.24)|
           (Mannosidase, alpha B) (Lysosomal acid
           alpha-mannosidase) (Laman) (Mannosidase alpha class 2B
           member 1)
          Length = 1007

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 40  SIYNTKRIPPSTP--RSQHSHPLLCASLYIVEHVQYSASSYHPSQYPVSRLSPL 195
           S+Y+  R+    P  RSQHS P   +S  +    +Y  +S+HP    +S +  L
Sbjct: 570 SVYSVTRVSDQNPQTRSQHSRPQKYSSPVLSIKNEYLRASFHPDTGLLSMIEVL 623



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>T2E7_ECOLI (P50194) Type II restriction enzyme Eco47I (EC 3.1.21.4)|
           (Endonuclease Eco47I) (R.Eco47I)
          Length = 230

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 17/74 (22%), Positives = 33/74 (44%)
 Frame = +1

Query: 10  ERINEIKFIVSIYNTKRIPPSTPRSQHSHPLLCASLYIVEHVQYSASSYHPSQYPVSRLS 189
           E  ++ KF++   +      S PRS+     +       EH++Y A S+H S+ P     
Sbjct: 25  ELSSKFKFLIKFLSQFPEACSKPRSKKMQNKVGQE----EHIEYLARSFHESRLPRKPTP 80

Query: 190 PLLFAECIIKYIIN 231
           P    + ++  ++N
Sbjct: 81  PTTVPDEVVSIVLN 94



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>RL18_PARUW (Q6ME48) 50S ribosomal protein L18|
          Length = 123

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -2

Query: 214 LYIPRTTRVTDDLRGTGSGGKSLHCTVHARRCIEMHRGEDGSAGTVGWTAVF 59
           L + R  RV   LRGTG   K   C V +   I+    +D +  T+G TA F
Sbjct: 11  LRVKRAVRVRKHLRGTGL--KPRLCVVKSNSHIQAQLIDDETGTTLGGTATF 60



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>TPO_CANFA (P42705) Thrombopoietin precursor (Megakaryocyte colony-stimulating|
           factor) (C-MPL ligand) (ML) (Megakaryocyte growth and
           development factor) (MGDF)
          Length = 352

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +1

Query: 16  INEIKFIVSIYNTKRIPPSTPRSQHSHPLLCASLYIVEHVQYSASSYHPSQYPVS 180
           + E+  +V +  T R+ P  P      P L   +    HV +S  S  P  YP+S
Sbjct: 3   LTELLLVVMLLLTARLDPCLPAPPACDPRLLNKMLRDSHVLHSRLSQCPDIYPLS 57



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>GHRL_CARAU (Q8AUU1) Ghrelin precursor [Contains: Ghrelin-12; Ghrelin-19]|
          Length = 103

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +1

Query: 67  PSTPRSQHSHPLLCASLYIVEHVQYSASSYHPSQYPVSRLSP 192
           P   R+ H   LLCA    VE V+   S   P+Q P  R  P
Sbjct: 2   PLRRRASHMFVLLCALSLCVESVKGGTSFLSPAQKPQGRRPP 43



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>Y638_HAEIN (P44796) UPF0274 protein HI0638|
          Length = 205

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 215 IIHSANNKGDRRLTGYWL 162
           +IH  N +GD+ LT YWL
Sbjct: 68  LIHQLNAQGDQNLTRYWL 85



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>FYB_HUMAN (O15117) FYN-binding protein (FYN-T-binding protein) (FYB-120/130)|
           (p120/p130) (SLP-76-associated phosphoprotein)
           (SLAP-130)
          Length = 783

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 18/49 (36%), Positives = 20/49 (40%)
 Frame = +1

Query: 46  YNTKRIPPSTPRSQHSHPLLCASLYIVEHVQYSASSYHPSQYPVSRLSP 192
           Y+T  +PP  P    S P L AS              HPSQ PV  L P
Sbjct: 387 YSTTSLPPPPPSHPASQPPLPAS--------------HPSQPPVPSLPP 421



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>MTG8R_XENLA (Q9IAB2) Protein CBFA2T2 (MTG8-like protein) (MTG8-related protein|
           1)
          Length = 586

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 81  VPALPSSPLCISIHRRACTVQCKLLPP 161
           VPA+P SP+ + IH R+       LPP
Sbjct: 16  VPAMPGSPMEVKIHSRSSPPIMAPLPP 42



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>RNZ_CHLAB (Q5L6G2) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3|
           endonuclease)
          Length = 306

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 34  IVSIYNTKRIPPSTPRSQHSHPLLCASLYIVEHVQYSASSYH 159
           I  I +T   P     ++++  +LC S Y+ EH   + S YH
Sbjct: 203 IAVIADTLPCPSIVDLAKNARIMLCESTYLEEHSHLAESHYH 244



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>AGNY_APLSP (P12285) Neuroactive polyprotein R15-2 precursor [Contains: R15|
           alpha-1 peptide; R15 beta peptide; R15 gamma peptide]
          Length = 156

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 166 GSGGKSLHCTVHARRC 119
           GSGG  LHC VH   C
Sbjct: 66  GSGGLKLHCQVHPANC 81


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,108,300
Number of Sequences: 219361
Number of extensions: 963041
Number of successful extensions: 2650
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2650
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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