ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast25g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CLS1_BACSU (P45860) Probable cardiolipin synthetase 1 (EC 2.7.8.... 30 1.5
2PSAA_PROMA (Q9L4N4) Photosystem I P700 chlorophyll a apoprotein ... 29 2.6
3XYLT1_MOUSE (Q811B1) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyl... 28 5.8
4XYLT1_HUMAN (Q86Y38) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyl... 28 5.8
5AXN2_BRARE (P57095) Axin-2 (Axis inhibition protein 2) 28 7.5
6BEDB_PSEPU (Q07947) Benzene 1,2-dioxygenase system ferredoxin su... 27 9.9

>CLS1_BACSU (P45860) Probable cardiolipin synthetase 1 (EC 2.7.8.-)|
           (Cardiolipin synthase 1) (CL synthase 1)
          Length = 500

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -1

Query: 119 GVDLVPVSPLKYSGFS*ELGF 57
           GVD+VP SPLKY  F+ +L F
Sbjct: 219 GVDIVPFSPLKYGFFNQKLNF 239



to top

>PSAA_PROMA (Q9L4N4) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)|
          Length = 773

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -1

Query: 299 PRVSGDAARGGAPSVYPYRQDEDHLFLNL**ASAM*FWSHMCLL*SR*RIGLPLFTWLW 123
           P   G+ A+G AP+ Y    D DH  ++    +   FWS      S+   G    TW+W
Sbjct: 5   PPERGEKAKGAAPTPYDQPVDRDHAPIDYEKLNKPGFWS------SKLSKGPKTTTWIW 57



to top

>XYLT1_MOUSE (Q811B1) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)|
           (Peptide O-xylosyltransferase 1)
          Length = 953

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 42  VTLNTKP-QFSTEP*ILERTDRNQVNTIPKPGKQ-R*SNSSTRLQKTHMTPEL 194
           +TL T+   FS  P    RTD N  N++PK  +    SN + R QK    PEL
Sbjct: 122 ITLETQDGYFSHRPKEKVRTDSNNENSVPKDFENVDNSNFAPRTQKQKHQPEL 174



to top

>XYLT1_HUMAN (Q86Y38) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)|
           (XylT-I) (XT-I) (Peptide O-xylosyltransferase 1)
          Length = 959

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 42  VTLNTKP-QFSTEP*ILERTDRNQVNTIPKPGKQ-R*SNSSTRLQKTHMTPEL 194
           +TL T+   FS  P    RTD N  N++PK  +    SN + R QK    PEL
Sbjct: 129 ITLETQDGYFSHRPKEKVRTDSNNENSVPKDFENVDNSNFAPRTQKQKHQPEL 181



to top

>AXN2_BRARE (P57095) Axin-2 (Axis inhibition protein 2)|
          Length = 812

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 102 RNQVNTIPKPGKQR*SNSSTRLQKTHMTP 188
           R ++  + KP KQR S SS +  K+H  P
Sbjct: 675 RRRLEEVSKPSKQRHSTSSLQRDKSHPVP 703



to top

>BEDB_PSEPU (Q07947) Benzene 1,2-dioxygenase system ferredoxin subunit|
          Length = 107

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 316 PECDTVPVYPEMLHGEELHLCIRIGKTK 233
           P C  + VYP  + G+E+H+ +  G+ K
Sbjct: 80  PACKPIKVYPIKIEGDEVHVDLDNGELK 107


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,069,500
Number of Sequences: 219361
Number of extensions: 955806
Number of successful extensions: 2410
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2410
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top