ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast25f04 |
|---|---|
| Clone Library Name | barley_pub |
>FDH_HORVU (Q9ZRI8) Formate dehydrogenase, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase) (FDH) Length = 377 Score = 85.1 bits (209), Expect = 4e-17 Identities = 41/42 (97%), Positives = 41/42 (97%) Frame = -1 Query: 288 TIDAQLRYAAGVKDMLDRYFKGGEFPVENYIVKEGELASQYK 163 TIDAQLRYAAGVKDMLDRYFKG EFPVENYIVKEGELASQYK Sbjct: 336 TIDAQLRYAAGVKDMLDRYFKGEEFPVENYIVKEGELASQYK 377
>FDH1_ORYSA (Q9SXP2) Formate dehydrogenase 1, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase 1) (FDH 1) Length = 376 Score = 80.1 bits (196), Expect = 1e-15 Identities = 37/42 (88%), Positives = 41/42 (97%) Frame = -1 Query: 288 TIDAQLRYAAGVKDMLDRYFKGGEFPVENYIVKEGELASQYK 163 TIDAQLRYAAGVKDMLDRYFKG +FPV+NYIVKEG+LASQY+ Sbjct: 335 TIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKEGQLASQYQ 376
>FDH_SOLTU (Q07511) Formate dehydrogenase, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase) (FDH) Length = 381 Score = 76.6 bits (187), Expect = 1e-14 Identities = 35/42 (83%), Positives = 38/42 (90%) Frame = -1 Query: 288 TIDAQLRYAAGVKDMLDRYFKGGEFPVENYIVKEGELASQYK 163 TIDAQLRYAAG KDMLDRYFKG +FP ENYIVK+GELA QY+ Sbjct: 340 TIDAQLRYAAGTKDMLDRYFKGEDFPAENYIVKDGELAPQYR 381
>FDH_ARATH (Q9S7E4) Formate dehydrogenase, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase) (FDH) Length = 384 Score = 75.1 bits (183), Expect = 4e-14 Identities = 34/42 (80%), Positives = 38/42 (90%) Frame = -1 Query: 288 TIDAQLRYAAGVKDMLDRYFKGGEFPVENYIVKEGELASQYK 163 TIDAQLRYAAG KDML+RYFKG +FP ENYIVK+GELA QY+ Sbjct: 343 TIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 384
>FDH2_ORYSA (Q67U69) Formate dehydrogenase 2, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase 2) (FDH 2) Length = 378 Score = 74.7 bits (182), Expect = 6e-14 Identities = 34/42 (80%), Positives = 38/42 (90%) Frame = -1 Query: 288 TIDAQLRYAAGVKDMLDRYFKGGEFPVENYIVKEGELASQYK 163 TID QLRYAAGVKDMLDRYFKG +FP +NYIVK G+LASQY+ Sbjct: 337 TIDGQLRYAAGVKDMLDRYFKGEDFPAQNYIVKAGQLASQYQ 378
>FDH_PSESR (P33160) Formate dehydrogenase (EC 1.2.1.2) (NAD-dependent formate| dehydrogenase) (FDH) Length = 400 Score = 34.7 bits (78), Expect = 0.064 Identities = 17/38 (44%), Positives = 25/38 (65%) Frame = -1 Query: 288 TIDAQLRYAAGVKDMLDRYFKGGEFPVENYIVKEGELA 175 T+ AQ RYAAG +++L+ +F+G E IV+ G LA Sbjct: 337 TLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALA 374
>FDH1_YEAST (Q08911) Formate dehydrogenase 1 (EC 1.2.1.2) (NAD-dependent| formate dehydrogenase 1) Length = 376 Score = 33.9 bits (76), Expect = 0.11 Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 1/41 (2%) Frame = -1 Query: 288 TIDAQLRYAAGVKDMLDRYF-KGGEFPVENYIVKEGELASQ 169 ++DAQ RYA GVK++L+ YF K ++ ++ IV+ G A++ Sbjct: 330 SLDAQKRYAQGVKNILNSYFSKKFDYRPQDIIVQNGSYATR 370
>FDH_EMENI (Q03134) Probable formate dehydrogenase (EC 1.2.1.2) (NAD-dependent| formate dehydrogenase) (FDH) Length = 377 Score = 32.3 bits (72), Expect = 0.32 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%) Frame = -1 Query: 288 TIDAQLRYAAGVKDMLDRYFKGG-EFPVENYIVKEGELASQ 169 ++ AQ+RYA G K +LD YF G ++ ++ IV G+ A++ Sbjct: 329 SLAAQIRYANGTKAILDSYFSGRFDYQPQDLIVHGGDYATK 369
>FDH_NEUCR (Q07103) Formate dehydrogenase (EC 1.2.1.2) (NAD-dependent formate| dehydrogenase) (FDH) Length = 375 Score = 32.0 bits (71), Expect = 0.42 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%) Frame = -1 Query: 288 TIDAQLRYAAGVKDMLDRYFKG-GEFPVENYIVKEGELASQ 169 ++DAQ RYAAG K +++ Y G ++ E+ IV G+ A++ Sbjct: 317 SLDAQKRYAAGTKAIIESYLSGKHDYRPEDLIVYGGDYATK 357
>PHK_RHILO (Q988V7) Probable phosphoketolase (EC 4.1.2.-)| Length = 807 Score = 31.6 bits (70), Expect = 0.54 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +1 Query: 19 LPWLHPQADIHYLRSQRTLIQQHNGF 96 +PW P A ++YL S Q+HNGF Sbjct: 518 IPWRRPIASLNYLLSSHVWHQEHNGF 543
>FDH2_YEAST (Q08987) Formate dehydrogenase 2 (EC 1.2.1.2) (NAD-dependent| formate dehydrogenase 2) Length = 376 Score = 31.2 bits (69), Expect = 0.71 Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Frame = -1 Query: 288 TIDAQLRYAAGVKDMLDRYF-KGGEFPVENYIVKEGELASQ 169 ++ AQ RYA GVK++L+ YF K ++ ++ IV+ G A++ Sbjct: 330 SLHAQKRYAQGVKNILNSYFSKKFDYRPQDIIVQNGSYATR 370
>PHK_NOCFA (Q5Z066) Probable phosphoketolase (EC 4.1.2.-)| Length = 822 Score = 31.2 bits (69), Expect = 0.71 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 16 SLPWLHPQADIHYLRSQRTLIQQHNGF 96 ++PW P A ++YL S Q HNGF Sbjct: 537 AVPWRRPLASLNYLLSSHVWRQDHNGF 563
>PHK_RHOPA (Q6N976) Probable phosphoketolase (EC 4.1.2.-)| Length = 783 Score = 30.8 bits (68), Expect = 0.93 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 7/50 (14%) Frame = +1 Query: 4 RAFYSLPWLHPQADIHYLRSQRTLIQQHN-------GFFSHASLQSSNML 132 +A ++PW P A ++YL + Q HN GF H + + SN++ Sbjct: 501 KACATIPWRKPIASLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKSNVV 550
>PHK_RHOBA (Q7UH14) Probable phosphoketolase (EC 4.1.2.-)| Length = 793 Score = 30.4 bits (67), Expect = 1.2 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +1 Query: 19 LPWLHPQADIHYLRSQRTLIQQHNGF 96 LPW H A ++YL + Q HNGF Sbjct: 512 LPWRHKIASLNYLLASHVWRQDHNGF 537
>PHK_BRAJA (Q89S87) Probable phosphoketolase (EC 4.1.2.-)| Length = 801 Score = 30.4 bits (67), Expect = 1.2 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +1 Query: 19 LPWLHPQADIHYLRSQRTLIQQHNGF 96 LPW P A ++YL + Q HNGF Sbjct: 518 LPWRRPIASLNYLLTSHVWRQDHNGF 543
>PHK_GLOVI (Q7NLX2) Probable phosphoketolase (EC 4.1.2.-)| Length = 793 Score = 29.6 bits (65), Expect = 2.1 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +1 Query: 19 LPWLHPQADIHYLRSQRTLIQQHNGF 96 +PW P A ++YL + Q HNGF Sbjct: 514 IPWRRPIASLNYLLTSHVWRQDHNGF 539
>PHK_STRCO (Q8CK51) Probable phosphoketolase (EC 4.1.2.-)| Length = 796 Score = 29.6 bits (65), Expect = 2.1 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +1 Query: 19 LPWLHPQADIHYLRSQRTLIQQHNGF 96 LPW P A ++YL + Q HNGF Sbjct: 514 LPWRAPIASLNYLLTSHVWRQDHNGF 539
>PHK_NITEU (Q82T07) Probable phosphoketolase (EC 4.1.2.-)| Length = 790 Score = 29.6 bits (65), Expect = 2.1 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +1 Query: 19 LPWLHPQADIHYLRSQRTLIQQHNGF 96 +PW P A ++YL + Q HNGF Sbjct: 510 IPWRRPIASLNYLLTSHVWRQDHNGF 535
>METE_SALTI (Q8Z3B6) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 753 Score = 29.6 bits (65), Expect = 2.1 Identities = 19/34 (55%), Positives = 20/34 (58%), Gaps = 3/34 (8%) Frame = +1 Query: 175 GELAFLDDVVLHGELPALE---VPIQHVLHSSRV 267 GELA L D + GE ALE VPIQ HS RV Sbjct: 353 GELALLRDALNSGETAALEEWSVPIQARRHSHRV 386
>PHK1_RHIME (Q92T74) Probable phosphoketolase 1 (EC 4.1.2.-)| Length = 789 Score = 29.3 bits (64), Expect = 2.7 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +1 Query: 19 LPWLHPQADIHYLRSQRTLIQQHNGF 96 +PW P A ++Y S Q HNGF Sbjct: 494 IPWRRPIASLNYFLSSHVWRQDHNGF 519
>ARI2_DROME (O76924) Protein ariadne-2 (Ari-2)| Length = 509 Score = 29.3 bits (64), Expect = 2.7 Identities = 19/63 (30%), Positives = 28/63 (44%) Frame = +2 Query: 2 PELFIHCHGCTPRQTSIISVLRERSYNNTMVSSLTPRFRVQICYHAASEGLGNYLYWLAS 181 P + + T + +LR S +S TP++R Q+C AS LG+ Y LA Sbjct: 111 PSVAVTDTASTSAAAASAQLLRLGSSGYKTTASATPQYRSQMCPVCASSQLGDKFYSLAC 170 Query: 182 SPS 190 S Sbjct: 171 GHS 173
>BSH_CHICK (Q6RFL5) Brain-specific homeobox protein homolog| Length = 233 Score = 28.9 bits (63), Expect = 3.5 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%) Frame = +1 Query: 187 FLDDVVLHGELPALEVPIQHVLHS--SRVPQL 276 F++D++LH P EVP +H S SRVP L Sbjct: 21 FIEDILLHKPKPLREVPPEHFAGSLASRVPLL 52
>FDH_PICAN (P33677) Formate dehydrogenase (EC 1.2.1.2) (NAD-dependent formate| dehydrogenase) (FDH) Length = 361 Score = 28.5 bits (62), Expect = 4.6 Identities = 11/19 (57%), Positives = 16/19 (84%) Frame = -1 Query: 285 IDAQLRYAAGVKDMLDRYF 229 IDAQ+RYA G K++L+ +F Sbjct: 316 IDAQVRYAQGTKNILESFF 334
>GPR64_RAT (Q8CJ11) G-protein coupled receptor 64 precursor| (Epididymis-specific protein 6) (Re6 receptor) Length = 1013 Score = 28.5 bits (62), Expect = 4.6 Identities = 10/18 (55%), Positives = 16/18 (88%) Frame = +1 Query: 220 PALEVPIQHVLHSSRVPQ 273 PA+++P+QHV+ SS +PQ Sbjct: 308 PAIDLPVQHVVASSSLPQ 325
>PHK_MYCPA (Q73ZM8) Probable phosphoketolase (EC 4.1.2.-)| Length = 804 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +1 Query: 19 LPWLHPQADIHYLRSQRTLIQQHNG 93 LPW P A ++YL + Q HNG Sbjct: 515 LPWRRPIASLNYLLTSHVWRQDHNG 539
>PHK_CHLTE (Q8KCA0) Probable phosphoketolase (EC 4.1.2.-)| Length = 791 Score = 28.1 bits (61), Expect = 6.0 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = +1 Query: 19 LPWLHPQADIHYLRSQRTLIQQHNGF 96 +PW P A ++Y + Q HNGF Sbjct: 511 IPWRRPIASLNYFLTSHVWRQDHNGF 536
>PPNK_BACST (P58055) Probable inorganic polyphosphate/ATP-NAD kinase (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase) Length = 271 Score = 28.1 bits (61), Expect = 6.0 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Frame = -3 Query: 181 ARQPVQVVTQPLRRCMVTYLN--SEARRERRNHCVV 80 A+ P QVV PL + YLN SEA+ N C V Sbjct: 98 AKTPYQVVEYPLLEVTIRYLNGGSEAKYLALNECTV 133
>PPNK1_GEOKA (Q5L1R5) Probable inorganic polyphosphate/ATP-NAD kinase 1 (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase 1) Length = 271 Score = 28.1 bits (61), Expect = 6.0 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Frame = -3 Query: 181 ARQPVQVVTQPLRRCMVTYLN--SEARRERRNHCVV 80 A+ P QVV PL + YLN SEA+ N C V Sbjct: 98 AKTPYQVVEYPLLEVTIRYLNGGSEAKYLALNECTV 133
>METE_SALTY (Q9L6N1) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 753 Score = 28.1 bits (61), Expect = 6.0 Identities = 18/34 (52%), Positives = 19/34 (55%), Gaps = 3/34 (8%) Frame = +1 Query: 175 GELAFLDDVVLHGELPALE---VPIQHVLHSSRV 267 GELA L D + GE ALE PIQ HS RV Sbjct: 353 GELALLRDALNSGETAALEEWSAPIQARRHSRRV 386
>PHK2_RHIME (Q92ZA4) Probable phosphoketolase 2 (EC 4.1.2.-)| Length = 779 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +1 Query: 19 LPWLHPQADIHYLRSQRTLIQQHNGF 96 +PW P A + YL + Q HNGF Sbjct: 495 VPWRKPIASLTYLLTSHVWRQDHNGF 520 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,802,228 Number of Sequences: 219361 Number of extensions: 804343 Number of successful extensions: 2520 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 2474 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2520 length of database: 80,573,946 effective HSP length: 71 effective length of database: 64,999,315 effective search space used: 1559983560 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
