ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast25c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chr... 38 2.0
2gb|AC159139.9| Mus musculus 10 BAC RP24-370M23 (Roswell Park Can... 38 2.0
3emb|BX322794.6| Zebrafish DNA sequence from clone RP71-44B8 in l... 38 2.0
4ref|XM_572155.1| Cryptococcus neoformans var. neoformans JEC21 c... 38 2.0
5emb|AL845287.10| Zebrafish DNA sequence from clone DKEY-78K11, c... 38 2.0
6gb|AC100927.11| Mus musculus chromosome 3, clone RP23-72A21, com... 36 8.0
7gb|AC121785.3| Mus musculus BAC clone RP23-382K4 from chromosome... 36 8.0
8ref|XM_950025.1| Theileria annulata strain Ankara mitochondrial ... 36 8.0
9gb|AC156244.2| Xenopus tropicalis clone CH216-92I18, complete se... 36 8.0
10gb|AC083806.16| Homo sapiens 12q BAC RP11-240G22 (Roswell Park C... 36 8.0
11dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 36 8.0
12dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 36 8.0
13gb|U53332.2| Caenorhabditis elegans cosmid F59G1, complete sequence 36 8.0
14gb|AC023913.7|AC023913 Arabidopsis thaliana chromosome 1 BAC F7P... 36 8.0
15gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 36 8.0

>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete
               sequence
          Length = 1347793

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 31      tccatcccgattcccgaac 49
               |||||||||||||||||||
Sbjct: 1150815 tccatcccgattcccgaac 1150797



to top

>gb|AC159139.9| Mus musculus 10 BAC RP24-370M23 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 185202

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 5     attaccatttaacacttga 23
             |||||||||||||||||||
Sbjct: 66052 attaccatttaacacttga 66070



to top

>emb|BX322794.6| Zebrafish DNA sequence from clone RP71-44B8 in linkage group 23, complete
              sequence
          Length = 144572

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 9      ccatttaacacttgataca 27
              |||||||||||||||||||
Sbjct: 112816 ccatttaacacttgataca 112834



to top

>ref|XM_572155.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7
          Length = 2547

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 31  tccatcccgattcccgaac 49
           |||||||||||||||||||
Sbjct: 808 tccatcccgattcccgaac 826



to top

>emb|AL845287.10| Zebrafish DNA sequence from clone DKEY-78K11, complete sequence
          Length = 174301

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 9      ccatttaacacttgataca 27
              |||||||||||||||||||
Sbjct: 150920 ccatttaacacttgataca 150938



to top

>gb|AC100927.11| Mus musculus chromosome 3, clone RP23-72A21, complete sequence
          Length = 196709

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 8    accatttaacacttgata 25
            ||||||||||||||||||
Sbjct: 1148 accatttaacacttgata 1131



to top

>gb|AC121785.3| Mus musculus BAC clone RP23-382K4 from chromosome 3, complete sequence
          Length = 197272

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 8      accatttaacacttgata 25
              ||||||||||||||||||
Sbjct: 169299 accatttaacacttgata 169282



to top

>ref|XM_950025.1| Theileria annulata strain Ankara mitochondrial carrier (TA04520)
          partial mRNA
          Length = 918

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                
Query: 14 taacacttgatacatgatccat 35
          ||||| ||||||||||||||||
Sbjct: 22 taacatttgatacatgatccat 1



to top

>gb|AC156244.2| Xenopus tropicalis clone CH216-92I18, complete sequence
          Length = 140675

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 1      cataattaccatttaaca 18
              ||||||||||||||||||
Sbjct: 124307 cataattaccatttaaca 124290



to top

>gb|AC083806.16| Homo sapiens 12q BAC RP11-240G22 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 164461

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 4     aattaccatttaacactt 21
             ||||||||||||||||||
Sbjct: 69637 aattaccatttaacactt 69620



to top

>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 31     tccatcccgattcccgaa 48
              ||||||||||||||||||
Sbjct: 449895 tccatcccgattcccgaa 449878



to top

>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 22      gatacatgatccatcccg 39
               ||||||||||||||||||
Sbjct: 1776624 gatacatgatccatcccg 1776641



to top

>gb|U53332.2| Caenorhabditis elegans cosmid F59G1, complete sequence
          Length = 25643

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 6     ttaccatttaacacttga 23
             ||||||||||||||||||
Sbjct: 18771 ttaccatttaacacttga 18788



to top

>gb|AC023913.7|AC023913 Arabidopsis thaliana chromosome 1 BAC F7P12 genomic sequence, complete
             sequence
          Length = 82214

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 1     cataattaccatttaaca 18
             ||||||||||||||||||
Sbjct: 61174 cataattaccatttaaca 61157



to top

>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 32      ccatcccgattcccgaac 49
               ||||||||||||||||||
Sbjct: 1902275 ccatcccgattcccgaac 1902292


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 309,024
Number of Sequences: 3902068
Number of extensions: 309024
Number of successful extensions: 21455
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21372
Number of HSP's gapped (non-prelim): 83
length of query: 57
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 36
effective length of database: 17,151,101,840
effective search space: 617439666240
effective search space used: 617439666240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
to top