ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast25c02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BC076594.1| Mus musculus contactin 6, mRNA (cDNA clone MGC:100179 IMAGE:30649661), complete cds Length = 3613 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 catagatagaaaggtatgtg 124 |||||||||||||||||||| Sbjct: 1311 catagatagaaaggtatgtg 1292
>gb|AC087900.19| Mus musculus strain C57BL/6J clone rp23-171i6 map 19, complete sequence Length = 195066 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tggtctgtgtgtgcctagag 239 |||||||||||||||||||| Sbjct: 52177 tggtctgtgtgtgcctagag 52196
>gb|AC027118.9| Homo sapiens chromosome 10 clone RP11-573I11, complete sequence Length = 170255 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 16 cactattatttagttttcacaggt 39 |||| ||||||||||||||||||| Sbjct: 164145 cacttttatttagttttcacaggt 164168
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 gcactattatttagttttca 34 |||||||||||||||||||| Sbjct: 338721 gcactattatttagttttca 338702 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 gcactattatttagttttca 34 |||||||||||||||||||| Sbjct: 249211 gcactattatttagttttca 249192 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 gcactattatttagttttca 34 |||||||||||||||||||| Sbjct: 228868 gcactattatttagttttca 228849
>ref|NM_017383.3| Mus musculus contactin 6 (Cntn6), mRNA Length = 3613 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 catagatagaaaggtatgtg 124 |||||||||||||||||||| Sbjct: 1311 catagatagaaaggtatgtg 1292
>dbj|AK052972.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930005M21 product:contactin 6, full insert sequence Length = 3468 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 catagatagaaaggtatgtg 124 |||||||||||||||||||| Sbjct: 1204 catagatagaaaggtatgtg 1185
>gb|AC007320.3|AC007320 Homo sapiens BAC clone RP11-477B5 from Y, complete sequence Length = 187894 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 aacaacagtagcactattatttag 28 |||||| ||||||||||||||||| Sbjct: 67257 aacaactgtagcactattatttag 67280
>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2 (P1-P2-P3-IR2@) on chromosome Y Length = 4538292 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 aacaacagtagcactattatttag 28 |||||| ||||||||||||||||| Sbjct: 518658 aacaactgtagcactattatttag 518681
>gb|AC153023.2| Mus musculus 6 BAC RP23-253M3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 160526 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 catagatagaaaggtatgtg 124 |||||||||||||||||||| Sbjct: 18281 catagatagaaaggtatgtg 18262
>gb|AC153990.2| Mus musculus 6 BAC RP24-293L1 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 172768 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 catagatagaaaggtatgtg 124 |||||||||||||||||||| Sbjct: 40459 catagatagaaaggtatgtg 40478
>dbj|AB032602.1| Mus musculus mNB-3 mRNA for neural recognition molecule NB-3, complete cds Length = 3087 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 catagatagaaaggtatgtg 124 |||||||||||||||||||| Sbjct: 997 catagatagaaaggtatgtg 978 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,844,317 Number of Sequences: 3902068 Number of extensions: 1844317 Number of successful extensions: 33193 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33164 Number of HSP's gapped (non-prelim): 29 length of query: 241 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 219 effective length of database: 17,147,199,772 effective search space: 3755236750068 effective search space used: 3755236750068 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
