ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast25a06 |
|---|---|
| Clone Library Name | barley_pub |
>Y283_BACHD (Q9KG32) Hypothetical protein BH0283| Length = 265 Score = 65.9 bits (159), Expect = 2e-11 Identities = 32/65 (49%), Positives = 44/65 (67%) Frame = -2 Query: 406 GIDEDPVCGSAHCVLAPYWGGKLGKQKLVAFQVSPRSGTLYLELDVENRRVRIQGEAVTV 227 G++EDPV GSAHC L PYW KL K + +A+Q S R G L ++L ++ RV + G+AVTV Sbjct: 201 GVNEDPVTGSAHCCLGPYWQEKLNKNEFLAYQASKRGGMLKIKL--QHDRVFLLGQAVTV 258 Query: 226 MAGTL 212 + L Sbjct: 259 LRSEL 263
>Y3578_PSEAE (Q9HY42) Hypothetical protein PA3578| Length = 261 Score = 65.5 bits (158), Expect = 3e-11 Identities = 34/65 (52%), Positives = 39/65 (60%) Frame = -2 Query: 406 GIDEDPVCGSAHCVLAPYWGGKLGKQKLVAFQVSPRSGTLYLELDVENRRVRIQGEAVTV 227 G+DEDPV GSAHC L PYW +L K L A Q S R G L+ L E RV I G AV V Sbjct: 196 GVDEDPVTGSAHCSLIPYWAQRLNKLSLTAQQCSARGGELWCRL--EGERVSIAGHAVLV 253 Query: 226 MAGTL 212 +G + Sbjct: 254 ASGRI 258
>Y2770_PSEAE (Q9I073) Hypothetical protein PA2770| Length = 259 Score = 65.5 bits (158), Expect = 3e-11 Identities = 35/65 (53%), Positives = 41/65 (63%) Frame = -2 Query: 406 GIDEDPVCGSAHCVLAPYWGGKLGKQKLVAFQVSPRSGTLYLELDVENRRVRIQGEAVTV 227 G++EDPV GSAH LAPYW +LGK +L A Q R G LE DV RV I G+A Sbjct: 195 GVNEDPVTGSAHTSLAPYWAQRLGKTRLSAEQGGARKGR--LECDVRGERVVISGKAALY 252 Query: 226 MAGTL 212 M+GTL Sbjct: 253 MSGTL 257
>PHZ1_MOUSE (Q9CXN7) Probable oxidoreductase 3110049J23Rik| Length = 288 Score = 63.9 bits (154), Expect = 9e-11 Identities = 34/67 (50%), Positives = 44/67 (65%) Frame = -2 Query: 406 GIDEDPVCGSAHCVLAPYWGGKLGKQKLVAFQVSPRSGTLYLELDVENRRVRIQGEAVTV 227 G+ EDPV GS H +L PYW +LGK+++ AFQ S R G L + L + RV I+G AV V Sbjct: 223 GVAEDPVTGSTHTLLGPYWSEELGKKEMRAFQCSRRGGELDINLRPDG-RVDIKGGAVIV 281 Query: 226 MAGTLFA 206 + GTL A Sbjct: 282 LEGTLTA 288
>ULA4_HUMAN (P30039) MAWD binding protein (Unknown protein 32 from 2D-page of| liver tissue) Length = 288 Score = 62.4 bits (150), Expect = 2e-10 Identities = 34/67 (50%), Positives = 43/67 (64%) Frame = -2 Query: 406 GIDEDPVCGSAHCVLAPYWGGKLGKQKLVAFQVSPRSGTLYLELDVENRRVRIQGEAVTV 227 G+ EDPV GSAH VL+ YW LGK+++ AFQ S R G L + L + RV I+G A V Sbjct: 223 GVAEDPVTGSAHAVLSSYWSQHLGKKEMHAFQCSHRGGELGISLRPDG-RVDIRGGAAVV 281 Query: 226 MAGTLFA 206 + GTL A Sbjct: 282 LEGTLTA 288
>PHZ2_MOUSE (Q9DCG6) Probable oxidoreductase 0610038K03Rik| Length = 288 Score = 61.2 bits (147), Expect = 6e-10 Identities = 35/67 (52%), Positives = 44/67 (65%) Frame = -2 Query: 406 GIDEDPVCGSAHCVLAPYWGGKLGKQKLVAFQVSPRSGTLYLELDVENRRVRIQGEAVTV 227 GI EDPV GSAH VL+ YW +L K+++ AFQ S R G L + L + RV I+G AV V Sbjct: 223 GIAEDPVTGSAHTVLSSYWSQQLRKKEMRAFQCSRRGGELDISLRPDG-RVDIKGGAVIV 281 Query: 226 MAGTLFA 206 + GTL A Sbjct: 282 LEGTLTA 288
>YX21_CAUCR (Q9A3I3) Hypothetical protein CC3221| Length = 275 Score = 53.1 bits (126), Expect = 2e-07 Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Frame = -2 Query: 406 GIDEDPVCGSAHCVLAPYWGGKLGKQKLVAFQVSPRSGTLYLELDVENR--RVRIQGEAV 233 GI EDP GSAHC+L P +G KLG +L Q P G +L+ ENR RV ++G Sbjct: 205 GIPEDPATGSAHCILMPLFGDKLGAGRLKFHQAYPGRGG---DLECENRGARVLLRGRGF 261 Query: 232 TVMAGTL 212 TVM L Sbjct: 262 TVMESQL 268
>Y3195_VIBCH (Q9KMG3) Hypothetical protein VCA0395| Length = 279 Score = 45.1 bits (105), Expect = 4e-05 Identities = 24/48 (50%), Positives = 26/48 (54%) Frame = -2 Query: 406 GIDEDPVCGSAHCVLAPYWGGKLGKQKLVAFQVSPRSGTLYLELDVEN 263 GI ED GSA C LAPYW KLG L A Q+S G +E EN Sbjct: 217 GISEDLATGSAQCSLAPYWFKKLGSDALNARQLSMSGGYFEVERTTEN 264
>LAP2_HUMAN (Q96RT1) LAP2 protein (Erbb2-interacting protein) (Erbin)| (Densin-180-like protein) Length = 1412 Score = 28.9 bits (63), Expect = 3.0 Identities = 17/55 (30%), Positives = 27/55 (49%) Frame = -3 Query: 192 DTSRTCPIKEDFVEINIFAAMRWFNNRCTSLWNKMDYLNNVRQNKVELHGSKCSN 28 DTS P+K+ ++IN + +R + SL D LN+ + K + H K N Sbjct: 677 DTSLCSPVKQTHIDIN--SKIRQEDENFNSLLQNGDILNSSTEEKFKAHDKKDFN 729
>LKH1_SCHPO (Q10156) Dual specificity protein kinase lkh1 (EC 2.7.12.1)| Length = 575 Score = 28.9 bits (63), Expect = 3.0 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = +1 Query: 274 PAPGIVSRSLEIPETLPVFVSPAFHPNRVPKHSVHCH 384 P+P + + + P +P HPNR+P H +H H Sbjct: 56 PSPNLPHQPISKPPVIPNLPKLQVHPNRLP-HPIHNH 91
>PTSS2_MOUSE (Q9Z1X2) Phosphatidylserine synthase 2 (EC 2.7.8.-) (PtdSer| synthase 2) (PSS-2) (Serine-exchange enzyme II) Length = 473 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/35 (31%), Positives = 18/35 (51%) Frame = -1 Query: 107 PVYGIKWII*TMSGKTRWSCMVASARIQL*QYSFE 3 P + I W + T+ + W CM+ S + +YS E Sbjct: 176 PAHFIGWYLKTLMIRDWWMCMIISVMFEFLEYSLE 210
>PTSS2_CRIGR (O08888) Phosphatidylserine synthase 2 (EC 2.7.8.-) (PtdSer| synthase 2) (PSS-2) (Serine-exchange enzyme II) Length = 474 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/35 (31%), Positives = 18/35 (51%) Frame = -1 Query: 107 PVYGIKWII*TMSGKTRWSCMVASARIQL*QYSFE 3 P + I W + T+ + W CM+ S + +YS E Sbjct: 176 PAHFIGWYLKTLMIRDWWMCMIISVMFEFLEYSLE 210
>TRUD_THICR (Q31J61) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 346 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Frame = -3 Query: 306 LQGAGHYTWSWMLRIGE-CGFRAKLLLSWLG 217 L G G + W W+ +IG+ + AK + SW G Sbjct: 40 LSGEGEHLWVWVQKIGQNTDWVAKQIASWAG 70
>TALA_POVBA (P14999) Large T antigen| Length = 691 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Frame = +1 Query: 247 ESALADSQHPAPGIVSRSLEIPETLP----VFVSPAFHPNR 357 E A ADSQH P R +E P+ P F+S A NR Sbjct: 116 EEATADSQHSTPPKKKRKVEDPKDFPSDLHQFLSQAVFSNR 156
>TALA_POVBK (P03071) Large T antigen| Length = 695 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Frame = +1 Query: 247 ESALADSQHPAPGIVSRSLEIPETLP----VFVSPAFHPNR 357 E A ADSQH P R +E P+ P F+S A NR Sbjct: 116 EEATADSQHSTPPKKKRKVEDPKDFPSDLHQFLSQAVFSNR 156
>AES1_SCHPO (Q8NIL3) Antisense-enhancing sequence 1 (AES factor 1)| Length = 296 Score = 28.1 bits (61), Expect = 5.2 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 8/73 (10%) Frame = -2 Query: 403 IDEDPVCGSAHCVLAPYWGGKLGKQKLVAFQVS-----PRSGTLYLELDVENRR---VRI 248 ++EDP CGS + Y G ++F +S R + +DV + + V + Sbjct: 223 VNEDPACGSGAGAVGVYIGSSQKTPTSLSFTISQGTKLSRQAISKVSVDVSSNKSIAVFV 282 Query: 247 QGEAVTVMAGTLF 209 G+A T ++G F Sbjct: 283 GGQAKTCISGKSF 295
>TRM1_METTH (O27258) N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC| 2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA 2,2-dimethylguanosine-26 methyltransferase) (tRNA(m(2,2)G26)dimethyltransferase) Length = 380 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/62 (24%), Positives = 26/62 (41%) Frame = -2 Query: 397 EDPVCGSAHCVLAPYWGGKLGKQKLVAFQVSPRSGTLYLELDVENRRVRIQGEAVTVMAG 218 E P CG+ V P W G + K + + +VEN+ + G+ + ++ G Sbjct: 260 ECPHCGAEMDVAGPLWVGDIQDSKFIGEMIG----------EVENKELNTAGDVLKLLKG 309 Query: 217 TL 212 L Sbjct: 310 CL 311
>BEX1_MOUSE (Q9R224) Protein BEX1 (Brain-expressed X-linked protein 1 homolog)| (Reduced expression protein 3) (REX-3) Length = 128 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -3 Query: 318 RFRYLQGAGHYTWSWMLRIGE 256 RFR Q HY W M R+GE Sbjct: 55 RFRVRQPIAHYRWDLMQRVGE 75
>RS2_RAT (P27952) 40S ribosomal protein S2| Length = 293 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = -2 Query: 355 YWGGKLGKQKLVAFQVSPRSGTLYLEL 275 YWG K+GK V +V+ R G++ + L Sbjct: 169 YWGNKIGKPHTVPCKVTGRCGSVLVRL 195
>RS2_MOUSE (P25444) 40S ribosomal protein S2 (S4) (LLRep3 protein)| Length = 293 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = -2 Query: 355 YWGGKLGKQKLVAFQVSPRSGTLYLEL 275 YWG K+GK V +V+ R G++ + L Sbjct: 169 YWGNKIGKPHTVPCKVTGRCGSVLVRL 195
>RS2_HUMAN (P15880) 40S ribosomal protein S2 (S4) (LLRep3 protein)| Length = 293 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = -2 Query: 355 YWGGKLGKQKLVAFQVSPRSGTLYLEL 275 YWG K+GK V +V+ R G++ + L Sbjct: 169 YWGNKIGKPHTVPCKVTGRCGSVLVRL 195
>P72_MYCMS (P55801) Immunodominant protein p72 precursor| Length = 532 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = -2 Query: 346 GKLGKQKLVAFQVSPRSGTLYLELDVENR 260 GKL K+K+ A + +G L ++L++ENR Sbjct: 309 GKLYKEKITAVKYDDYNGILGVKLEIENR 337
>RS2_ICTPU (Q90YS3) 40S ribosomal protein S2| Length = 277 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = -2 Query: 355 YWGGKLGKQKLVAFQVSPRSGTLYLEL 275 YWG K+GK V +V+ R G++ + L Sbjct: 154 YWGNKIGKPHTVPCKVTGRCGSVLVRL 180
>RS2_BOVIN (O18789) 40S ribosomal protein S2 (Fragment)| Length = 286 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = -2 Query: 355 YWGGKLGKQKLVAFQVSPRSGTLYLEL 275 YWG K+GK V +V+ R G++ + L Sbjct: 162 YWGNKIGKPHTVPCKVTGRCGSVLVRL 188
>RS2_CRIGR (P46791) 40S ribosomal protein S2 (Fragment)| Length = 202 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = -2 Query: 355 YWGGKLGKQKLVAFQVSPRSGTLYLEL 275 YWG K+GK V +V+ R G++ + L Sbjct: 109 YWGNKIGKPHTVPCKVTGRCGSVLVRL 135
>BEX1_RAT (Q3MKQ2) Protein BEX1 (Brain-expressed X-linked protein 1 homolog)| (EG2RVC) Length = 128 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -3 Query: 318 RFRYLQGAGHYTWSWMLRIGE 256 RFR Q HY W M R+GE Sbjct: 55 RFRVRQPIAHYRWDLMHRVGE 75
>PKHG4_HUMAN (Q58EX7) Puratrophin-1 (Pleckstrin homology domain-containing| family G member 4) (Purkinje cell atrophy-associated protein 1) Length = 1191 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +1 Query: 250 SALADSQHPAPGIVSRSLEIPETLPVFVSPAFHPNRVPKHSVHCHIP 390 S L+ Q APG V + L + TL V ++P S+ HIP Sbjct: 265 SGLSQLQEAAPGAVYQVLLVGSTLLKEVPSGLQLEQLPSQSLLTHIP 311
>Y873_METJA (Q58283) Hypothetical ABC transporter ATP-binding protein MJ0873| Length = 290 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = -2 Query: 406 GIDEDPVCGSAHCVLAPYWGGKLGKQKLVAFQVSPRSGTLYL 281 GI+ + G C++ P GK K +A + P+ G +YL Sbjct: 19 GINLEINRGEILCIIGPNGAGKSTLLKTIATYLKPKKGVVYL 60
>RECF_CHLAB (Q5L648) DNA replication and repair protein recF| Length = 367 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/52 (26%), Positives = 26/52 (50%) Frame = +2 Query: 29 FEHLLPCSSTLFCLTLFK*SILFHKLVHRLLNQRIAANIFISTKSSLIGQVR 184 ++ L + CL+ + ++L+ L N ++ +FI KSSLI Q + Sbjct: 175 WDEQLATLGSYLCLSRYTCCAQLNQLIQTLWNNSLSERLFIKFKSSLIKQCK 226
>BEX2_RAT (Q3MKQ1) Protein BEX2 (Brain-expressed X-linked protein 2 homolog)| Length = 129 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -3 Query: 318 RFRYLQGAGHYTWSWMLRIGE 256 RFR Q HY W M R+GE Sbjct: 56 RFRVRQPIAHYRWDLMHRVGE 76
>PTSS2_HUMAN (Q9BVG9) Phosphatidylserine synthase 2 (EC 2.7.8.-) (PtdSer| synthase 2) (PSS-2) (Serine-exchange enzyme II) Length = 487 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/35 (28%), Positives = 18/35 (51%) Frame = -1 Query: 107 PVYGIKWII*TMSGKTRWSCMVASARIQL*QYSFE 3 P + + W + T+ + W CM+ S + +YS E Sbjct: 198 PAHFLGWYLKTLMIRDWWMCMIISVMFEFLEYSLE 232
>YBBL_ECOLI (P77279) Hypothetical ABC transporter ATP-binding protein ybbL| Length = 225 Score = 27.3 bits (59), Expect = 8.9 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Frame = -2 Query: 382 GSAHCVLAPYWGGKLGKQKLVAFQVSPRSGTLYLE-LDVENRRVRIQGEAVTVMAGT 215 G + P GK K+VA +SP SGTL E DV + I + V+ A T Sbjct: 33 GEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEIYRQQVSYCAQT 89 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,687,654 Number of Sequences: 219361 Number of extensions: 1247189 Number of successful extensions: 2996 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 2923 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2995 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
