ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast24g03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X07841.1|TARDNAI Wheat rDNA 25S-18S intergenic region EcoRI-... 56 2e-05
2emb|X66107.1|TU26S18S T.urartu rDNA for 26S rRNA (partial), exte... 56 2e-05
3gb|AF147501.1|AF147501 Hordeum vulgare 26S ribosomal RNA and 18S... 56 2e-05
4gb|M37231.1|RYENORR1 Rye 26S rRNA 3' end and 18S rRNA, 5' end 56 2e-05
5gb|M37269.1|WHTRGNOR Wheat Nor-D3 locus ribosomal RNA gene 52 3e-04
6emb|X66109.1|AU26SRRNA Aegilops umbellutata 3'-end of 26S rRNA gene 48 0.004
7gb|AF147500.1|AF147500 Triticum spelta 26S ribosomal RNA and 18S... 48 0.004
8emb|X74820.1|ASRDNAS A.sativa rDNA spacer 48 0.004
9emb|AL669983.2| Human DNA sequence from clone RP11-220D10 on chr... 42 0.24
10gb|BT016244.1| Zea mays clone Contig77 mRNA sequence 40 0.96
11gb|AY554266.1| Populus tremula var. glandulosa 26S ribosomal RNA... 40 0.96
12gb|AY554270.1| Populus tremula var. davidiana 26S ribosomal RNA ... 40 0.96
13gb|AY554269.1| Populus tomentosa 26S ribosomal RNA gene, partial... 40 0.96
14gb|AY554268.1| Populus alba x Populus tremula var. glandulosa 26... 40 0.96
15gb|AY554267.1| Populus alba 26S ribosomal RNA gene, partial sequ... 40 0.96
16emb|AJ309824.2|ZMA309824 Zea mays 25S rRNA gene and transposon-l... 40 0.96
17emb|X03990.1|ZMETS1 Maize 26S - 17S rDNA spacer region from Blac... 40 0.96
18dbj|AP008225.1| Oryza sativa (japonica cultivar-group) genomic D... 40 0.96
19dbj|AB197128.1| Setaria italica genes for 25S rRNA, IGS, 17S rRN... 40 0.96
20dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 0.96
21dbj|AP008245.2| Oryza sativa (japonica cultivar-group) genomic D... 40 0.96
22dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic D... 40 0.96
23emb|X03989.1|ZMRNETS1 Maize external transcribed spacer DNA upst... 40 0.96
24dbj|AK110461.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 0.96
25dbj|AK106912.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 0.96
26dbj|AK062961.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 0.96
27gb|AF147502.1|AF147502 Panicum miliaceum 26S ribosomal RNA and 1... 40 0.96
28emb|AJ009792.1|ICY9792 Imperata cylindrica 17S and 25S rRNA gene... 40 0.96
29gb|AC109195.27| Mus musculus chromosome 15, clone RP24-212B11, c... 38 3.8
30gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence 38 3.8
31gb|AC159453.1| Trypanosoma brucei chromosome 5 clone RPCI93-5M21... 38 3.8
32gb|AC163676.4| Mus musculus BAC clone RP24-81A22 from chromosome... 38 3.8
33gb|AC132863.8| Mus musculus chromosome 15, clone RP24-388K7, com... 38 3.8
34ref|XM_960705.1| Neurospora crassa OR74A hypothetical protein (N... 38 3.8
35gb|AC131593.16| Mus musculus chromosome 3, clone RP24-566M9, com... 38 3.8
36ref|XM_324837.1| Neurospora crassa OR74A hypothetical protein (N... 38 3.8
37gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 3.8
38gb|AC138548.8| Mus musculus chromosome 3, clone RP24-210N9, comp... 38 3.8
39gb|CP000284.1| Methylobacillus flagellatus KT, complete genome 38 3.8
40gb|DQ397629.1| Cenarchaeum symbiosum clone C01B12, complete sequ... 38 3.8
41gb|DQ397587.1| Cenarchaeum symbiosum clone C05B02, complete sequ... 38 3.8
42dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 3.8
43gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome... 38 3.8
44gb|AC131299.11| Mus musculus chromosome 15, clone RP23-335O2, co... 38 3.8 
>emb|X07841.1|TARDNAI Wheat rDNA 25S-18S intergenic region EcoRI-BamHI fragment
          Length = 4642

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 57  acgaatccgcgcgacatggggctggatctcag 88
           ||||||||| ||||||||||||||||||||||
Sbjct: 487 acgaatccgtgcgacatggggctggatctcag 456
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>emb|X66107.1|TU26S18S T.urartu rDNA for 26S rRNA (partial), external transcribed
          spacer, and 18S rRNA (partial)
          Length = 2495

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                          
Query: 57 acgaatccgcgcgacatggggctggatctcag 88
          ||||||||| ||||||||||||||||||||||
Sbjct: 80 acgaatccgtgcgacatggggctggatctcag 49
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>gb|AF147501.1|AF147501 Hordeum vulgare 26S ribosomal RNA and 18S ribosomal RNA genes,
          partial sequence; and intergenic region
          Length = 2609

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                          
Query: 57 acgaatccgcgcgacatggggctggatctcag 88
          ||||||||| ||||||||||||||||||||||
Sbjct: 68 acgaatccgtgcgacatggggctggatctcag 37
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>gb|M37231.1|RYENORR1 Rye 26S rRNA 3' end and 18S rRNA, 5' end
          Length = 4507

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 57   acgaatccgcgcgacatggggctggatctcag 88
            ||||||||| ||||||||||||||||||||||
Sbjct: 1291 acgaatccgtgcgacatggggctggatctcag 1260
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>gb|M37269.1|WHTRGNOR Wheat Nor-D3 locus ribosomal RNA gene
          Length = 3673

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 57  acgaatccgcgcgacatggggctggatctc 86
           ||||||||| ||||||||||||||||||||
Sbjct: 399 acgaatccgtgcgacatggggctggatctc 370
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>emb|X66109.1|AU26SRRNA Aegilops umbellutata 3'-end of 26S rRNA gene
          Length = 605

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                          
Query: 57 acgaatccgcgcgacatggggctggatctcag 88
          |||| |||| ||||||||||||||||||||||
Sbjct: 52 acgattccgtgcgacatggggctggatctcag 21
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>gb|AF147500.1|AF147500 Triticum spelta 26S ribosomal RNA and 18S ribosomal RNA genes,
          partial sequence; and intergenic region
          Length = 2987

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                      
Query: 57 acgaatccgcgcgacatggggctggatc 84
          ||||||||| ||||||||||||||||||
Sbjct: 28 acgaatccgtgcgacatggggctggatc 1
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>emb|X74820.1|ASRDNAS A.sativa rDNA spacer
          Length = 4098

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                          
Query: 57 acgaatccgcgcgacatggggctggatctcag 88
          ||||||||| ||||| ||||||||||||||||
Sbjct: 93 acgaatccgtgcgacgtggggctggatctcag 62
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>emb|AL669983.2| Human DNA sequence from clone RP11-220D10 on chromosome 9 Contains a
             ribosomal protein L35 (RPL35) pseudogene, complete
             sequence
          Length = 60725

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 35    ttcttactgtcctccttttgc 55
             |||||||||||||||||||||
Sbjct: 12927 ttcttactgtcctccttttgc 12947
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>gb|BT016244.1| Zea mays clone Contig77 mRNA sequence
          Length = 1121

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 57   acgaatccgcgcgacatggggctggatctcag 88
            ||||||||| |||||  |||||||||||||||
Sbjct: 1089 acgaatccgtgcgacgcggggctggatctcag 1058
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>gb|AY554266.1| Populus tremula var. glandulosa 26S ribosomal RNA gene, partial
          sequence; 26S-18S intergenic spacer, complete sequence;
          and 18S ribosomal RNA gene, partial sequence
          Length = 2909

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                          
Query: 57 acgaatccgcgcgacatggggctggatctcag 88
          ||||||| | |||||||||||||| |||||||
Sbjct: 75 acgaatcggagcgacatggggctgaatctcag 44
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>gb|AY554270.1| Populus tremula var. davidiana 26S ribosomal RNA gene, partial
          sequence; 26S-18S intergenic spacer, complete sequence;
          and 18S ribosomal RNA gene, partial sequence
          Length = 2909

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                          
Query: 57 acgaatccgcgcgacatggggctggatctcag 88
          ||||||| | |||||||||||||| |||||||
Sbjct: 75 acgaatcggagcgacatggggctgaatctcag 44
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>gb|AY554269.1| Populus tomentosa 26S ribosomal RNA gene, partial sequence;
          26S-18S intergenic spacer, complete sequence; and 18S
          ribosomal RNA gene, partial sequence
          Length = 2909

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                          
Query: 57 acgaatccgcgcgacatggggctggatctcag 88
          ||||||| | |||||||||||||| |||||||
Sbjct: 75 acgaatcggagcgacatggggctgaatctcag 44
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>gb|AY554268.1| Populus alba x Populus tremula var. glandulosa 26S ribosomal RNA
          gene, partial sequence; 26S-18S intergenic spacer,
          complete sequence; and 18S ribosomal RNA gene, partial
          sequence
          Length = 2909

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                          
Query: 57 acgaatccgcgcgacatggggctggatctcag 88
          ||||||| | |||||||||||||| |||||||
Sbjct: 75 acgaatcggagcgacatggggctgaatctcag 44
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>gb|AY554267.1| Populus alba 26S ribosomal RNA gene, partial sequence; 26S-18S
          intergenic spacer, complete sequence; and 18S ribosomal
          RNA gene, partial sequence
          Length = 2911

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                          
Query: 57 acgaatccgcgcgacatggggctggatctcag 88
          ||||||| | |||||||||||||| |||||||
Sbjct: 75 acgaatcggagcgacatggggctgaatctcag 44
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>emb|AJ309824.2|ZMA309824 Zea mays 25S rRNA gene and transposon-like sequence
          Length = 10658

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 57    acgaatccgcgcgacatggggctggatctcag 88
             ||||||||| |||||  |||||||||||||||
Sbjct: 10622 acgaatccgtgcgacgcggggctggatctcag 10591
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>emb|X03990.1|ZMETS1 Maize 26S - 17S rDNA spacer region from Black Mexican Sweet (BMS)
           suspension cells
          Length = 3131

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 57  acgaatccgcgcgacatggggctggatctcag 88
           ||||||||| |||||  |||||||||||||||
Sbjct: 100 acgaatccgtgcgacgcggggctggatctcag 69
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>dbj|AP008225.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
             fosmid clone:OSJNOa109J19
          Length = 30481

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 57    acgaatccgcgcgacatggggctggatctcag 88
             ||||||||| |||||  |||||||||||||||
Sbjct: 24536 acgaatccgtgcgacgcggggctggatctcag 24505



 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 57    acgaatccgcgcgacatggggctggatctcag 88
             ||||||||| |||||  |||||||||||||||
Sbjct: 16608 acgaatccgtgcgacgcggggctggatctcag 16577



 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 57   acgaatccgcgcgacatggggctggatctcag 88
            ||||||||| |||||  |||||||||||||||
Sbjct: 8680 acgaatccgtgcgacgcggggctggatctcag 8649



 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 57  acgaatccgcgcgacatggggctggatctcag 88
           ||||||||| |||||  |||||||||||||||
Sbjct: 752 acgaatccgtgcgacgcggggctggatctcag 721
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>dbj|AB197128.1| Setaria italica genes for 25S rRNA, IGS, 17S rRNA, partial and
           complete sequence
          Length = 2646

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 57  acgaatccgcgcgacatggggctggatctcag 88
           ||||||||| |||||  |||||||||||||||
Sbjct: 486 acgaatccgtgcgacgcggggctggatctcag 455
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 57       acgaatccgcgcgacatggggctggatctcag 88
                ||||||||| |||||  |||||||||||||||
Sbjct: 28735485 acgaatccgtgcgacgcggggctggatctcag 28735454
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>dbj|AP008245.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0013K10
          Length = 129118

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 57    acgaatccgcgcgacatggggctggatctcag 88
             ||||||||| |||||  |||||||||||||||
Sbjct: 32192 acgaatccgtgcgacgcggggctggatctcag 32161



 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 57    acgaatccgcgcgacatggggctggatctcag 88
             ||||||||| |||||  |||||||||||||||
Sbjct: 24264 acgaatccgtgcgacgcggggctggatctcag 24233



 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 57    acgaatccgcgcgacatggggctggatctcag 88
             ||||||||| |||||  |||||||||||||||
Sbjct: 16336 acgaatccgtgcgacgcggggctggatctcag 16305



 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 57   acgaatccgcgcgacatggggctggatctcag 88
            ||||||||| |||||  |||||||||||||||
Sbjct: 8408 acgaatccgtgcgacgcggggctggatctcag 8377



 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 57  acgaatccgcgcgacatggggctggatctcag 88
           ||||||||| |||||  |||||||||||||||
Sbjct: 480 acgaatccgtgcgacgcggggctggatctcag 449
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>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0459B01
          Length = 163087

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 57    acgaatccgcgcgacatggggctggatctcag 88
             ||||||||| |||||  |||||||||||||||
Sbjct: 52058 acgaatccgtgcgacgcggggctggatctcag 52027
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>emb|X03989.1|ZMRNETS1 Maize external transcribed spacer DNA upstream of 18S rRNA gene
          Length = 3199

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 57  acgaatccgcgcgacatggggctggatctcag 88
           ||||||||| |||||  |||||||||||||||
Sbjct: 143 acgaatccgtgcgacgcggggctggatctcag 112
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>dbj|AK110461.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-166-F11,
          full insert sequence
          Length = 2096

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                          
Query: 57 acgaatccgcgcgacatggggctggatctcag 88
          ||||||||| |||||  |||||||||||||||
Sbjct: 98 acgaatccgtgcgacgcggggctggatctcag 67
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>dbj|AK106912.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-A08, full
            insert sequence
          Length = 1640

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 57   acgaatccgcgcgacatggggctggatctcag 88
            ||||||||| |||||  |||||||||||||||
Sbjct: 1252 acgaatccgtgcgacgcggggctggatctcag 1221
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>dbj|AK062961.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-D06,
          full insert sequence
          Length = 628

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                          
Query: 57 acgaatccgcgcgacatggggctggatctcag 88
          ||||||||| |||||  |||||||||||||||
Sbjct: 93 acgaatccgtgcgacgcggggctggatctcag 62
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>gb|AF147502.1|AF147502 Panicum miliaceum 26S ribosomal RNA and 18S ribosomal RNA genes,
          partial sequence; and intergenic region
          Length = 2490

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                          
Query: 57 acgaatccgcgcgacatggggctggatctcag 88
          ||||||||| |||||  |||||||||||||||
Sbjct: 70 acgaatccgtgcgacgcggggctggatctcag 39
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>emb|AJ009792.1|ICY9792 Imperata cylindrica 17S and 25S rRNA genes and intergenic spacer,
          isolate 2-1
          Length = 1865

 Score = 40.1 bits (20), Expect = 0.96
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                          
Query: 57 acgaatccgcgcgacatggggctggatctcag 88
          ||||||||| | ||| ||||||||||||||||
Sbjct: 48 acgaatccgtgtgacgtggggctggatctcag 17
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>gb|AC109195.27| Mus musculus chromosome 15, clone RP24-212B11, complete sequence
          Length = 168270

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 20    ctacagcattcccagttct 38
             |||||||||||||||||||
Sbjct: 85804 ctacagcattcccagttct 85822
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>gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence
          Length = 1608198

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 38      ttactgtcctccttttgca 56
               |||||||||||||||||||
Sbjct: 1588669 ttactgtcctccttttgca 1588687
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>gb|AC159453.1| Trypanosoma brucei chromosome 5 clone RPCI93-5M21, complete sequence
          Length = 106046

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    ttactgtcctccttttgca 56
             |||||||||||||||||||
Sbjct: 86517 ttactgtcctccttttgca 86535
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>gb|AC163676.4| Mus musculus BAC clone RP24-81A22 from chromosome 3, complete sequence
          Length = 223760

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 8      caggaatctacactacagc 26
              |||||||||||||||||||
Sbjct: 167390 caggaatctacactacagc 167408
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>gb|AC132863.8| Mus musculus chromosome 15, clone RP24-388K7, complete sequence
          Length = 210979

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 21     tacagcattcccagttctt 39
              |||||||||||||||||||
Sbjct: 142188 tacagcattcccagttctt 142170
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>ref|XM_960705.1| Neurospora crassa OR74A hypothetical protein (NCU00658.1) partial
            mRNA
          Length = 12024

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 29   tcccagttcttactgtcctcctt 51
            |||||| ||||||||||||||||
Sbjct: 9545 tcccagctcttactgtcctcctt 9523
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>gb|AC131593.16| Mus musculus chromosome 3, clone RP24-566M9, complete sequence
          Length = 143352

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     caggaatctacactacagc 26
             |||||||||||||||||||
Sbjct: 62041 caggaatctacactacagc 62059
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>ref|XM_324837.1| Neurospora crassa OR74A hypothetical protein (NCU00658.1) partial
            mRNA
          Length = 12024

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 29   tcccagttcttactgtcctcctt 51
            |||||| ||||||||||||||||
Sbjct: 9545 tcccagctcttactgtcctcctt 9523
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 24      agcattcccagttcttact 42
               |||||||||||||||||||
Sbjct: 1059589 agcattcccagttcttact 1059607
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>gb|AC138548.8| Mus musculus chromosome 3, clone RP24-210N9, complete sequence
          Length = 155964

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 8     caggaatctacactacagc 26
             |||||||||||||||||||
Sbjct: 17123 caggaatctacactacagc 17105
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>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 65     gcgcgacatggggctggat 83
              |||||||||||||||||||
Sbjct: 317377 gcgcgacatggggctggat 317359
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>gb|DQ397629.1| Cenarchaeum symbiosum clone C01B12, complete sequence
          Length = 34772

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 69   gacatggggctggatctca 87
            |||||||||||||||||||
Sbjct: 5120 gacatggggctggatctca 5138
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>gb|DQ397587.1| Cenarchaeum symbiosum clone C05B02, complete sequence
          Length = 39977

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 69   gacatggggctggatctca 87
            |||||||||||||||||||
Sbjct: 5875 gacatggggctggatctca 5857
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 24      agcattcccagttcttact 42
               |||||||||||||||||||
Sbjct: 1059587 agcattcccagttcttact 1059605
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>gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1263H11,
             complete sequence
          Length = 126827

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 24    agcattcccagttcttact 42
             |||||||||||||||||||
Sbjct: 79804 agcattcccagttcttact 79822
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>gb|AC131299.11| Mus musculus chromosome 15, clone RP23-335O2, complete sequence
          Length = 215708

 Score = 38.2 bits (19), Expect = 3.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 21    tacagcattcccagttctt 39
             |||||||||||||||||||
Sbjct: 18473 tacagcattcccagttctt 18455


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 578,878
Number of Sequences: 3902068
Number of extensions: 578878
Number of successful extensions: 37825
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37735
Number of HSP's gapped (non-prelim): 90
length of query: 89
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 68
effective length of database: 17,151,101,840
effective search space: 1166274925120
effective search space used: 1166274925120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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