ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast24g02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469738.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.2
2gb|AE017356.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 3.2
3gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome... 40 3.2
4gb|AY374517.1| Oryza sativa (japonica cultivar-group) myosin hea... 40 3.2
5gb|AY374516.1| Oryza sativa (japonica cultivar-group) myosin hea... 40 3.2
6gb|AY374515.1| Oryza sativa (japonica cultivar-group) myosin hea... 40 3.2
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 3.2
8ref|XM_666421.1| Plasmodium berghei strain ANKA hypothetical pro... 40 3.2
9gb|AC135100.12| Medicago truncatula clone mth2-17j9, complete se... 40 3.2
10emb|Z83131.1|HSV602D8 Human DNA sequence from clone GHc-602D8 on... 40 3.2
11emb|Z97341.2|ATFCA6 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 3.2
12emb|AL161544.2|ATCHRIV44 Arabidopsis thaliana DNA chromosome 4, ... 40 3.2
13gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genom... 40 3.2
14dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.2
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.2
16emb|BX469935.5| Zebrafish DNA sequence from clone CH211-244H1 in... 40 3.2
17gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.2 
>ref|XM_469738.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4644

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 185  taaattcttttttggaggaacaaccacc 212
            |||||||||| | |||||||||||||||
Sbjct: 3339 taaattctttataggaggaacaaccacc 3312
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>gb|AE017356.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 14, complete
              sequence
          Length = 762694

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 132    gagtacaattacaaccaact 151
              ||||||||||||||||||||
Sbjct: 428320 gagtacaattacaaccaact 428339
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>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0063D09 map S1559, complete sequence
          Length = 190721

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 222   ttcaggcattccatgacgccgacc 245
             |||||||||||||||| |||||||
Sbjct: 84245 ttcaggcattccatgatgccgacc 84268
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>gb|AY374517.1| Oryza sativa (japonica cultivar-group) myosin heavy chain class XI E3
            protein (MyoXIE3) mRNA, complete cds
          Length = 5307

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 185  taaattcttttttggaggaacaaccacc 212
            |||||||||| | |||||||||||||||
Sbjct: 3339 taaattctttataggaggaacaaccacc 3312
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>gb|AY374516.1| Oryza sativa (japonica cultivar-group) myosin heavy chain class XI E2
            protein (MyoXIE2) mRNA, complete cds
          Length = 5348

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 185  taaattcttttttggaggaacaaccacc 212
            |||||||||| | |||||||||||||||
Sbjct: 3384 taaattctttataggaggaacaaccacc 3357
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>gb|AY374515.1| Oryza sativa (japonica cultivar-group) myosin heavy chain class XI E1
            protein (MyoXIE1) mRNA, complete cds
          Length = 5139

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 185  taaattcttttttggaggaacaaccacc 212
            |||||||||| | |||||||||||||||
Sbjct: 3384 taaattctttataggaggaacaaccacc 3357
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 185      taaattcttttttggaggaacaaccacc 212
                |||||||||| | |||||||||||||||
Sbjct: 30478739 taaattctttataggaggaacaaccacc 30478712
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>ref|XM_666421.1| Plasmodium berghei strain ANKA hypothetical protein
          (PB000860.01.0) partial mRNA
          Length = 975

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 2  caaaataaacatattattcc 21
          ||||||||||||||||||||
Sbjct: 49 caaaataaacatattattcc 68
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>gb|AC135100.12| Medicago truncatula clone mth2-17j9, complete sequence
          Length = 113967

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     ttttcgacaaaaggaaaatg 80
              ||||||||||||||||||||
Sbjct: 107080 ttttcgacaaaaggaaaatg 107061
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>emb|Z83131.1|HSV602D8 Human DNA sequence from clone GHc-602D8 on chromosome X Contains the
             ALEX2 gene for armadillo repeat protein ALEX2 and a novel
             pseudogene, complete sequence
          Length = 44829

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   ttggcaagtaaattcttttt 196
             ||||||||||||||||||||
Sbjct: 40592 ttggcaagtaaattcttttt 40573
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>emb|Z97341.2|ATFCA6 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6
          Length = 213788

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      acaaaataaacatattattc 20
              ||||||||||||||||||||
Sbjct: 125095 acaaaataaacatattattc 125076
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>emb|AL161544.2|ATCHRIV44 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44
          Length = 198735

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      acaaaataaacatattattc 20
              ||||||||||||||||||||
Sbjct: 103023 acaaaataaacatattattc 103004
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>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete
             sequence
          Length = 139872

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 185   taaattcttttttggaggaacaaccacc 212
             |||||||||| | |||||||||||||||
Sbjct: 10312 taaattctttataggaggaacaaccacc 10285
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 222     ttcaggcattccatgacgccgacc 245
               |||||||||||||||| |||||||
Sbjct: 3716573 ttcaggcattccatgatgccgacc 3716596
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 185      taaattcttttttggaggaacaaccacc 212
                |||||||||| | |||||||||||||||
Sbjct: 30570161 taaattctttataggaggaacaaccacc 30570134
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>emb|BX469935.5| Zebrafish DNA sequence from clone CH211-244H1 in linkage group 21,
             complete sequence
          Length = 171507

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   ttcttttttggaggaacaac 208
             ||||||||||||||||||||
Sbjct: 52381 ttcttttttggaggaacaac 52362
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 222     ttcaggcattccatgacgccgacc 245
               |||||||||||||||| |||||||
Sbjct: 3725267 ttcaggcattccatgatgccgacc 3725290


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,602,356
Number of Sequences: 3902068
Number of extensions: 2602356
Number of successful extensions: 47777
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47647
Number of HSP's gapped (non-prelim): 130
length of query: 247
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 225
effective length of database: 17,147,199,772
effective search space: 3858119948700
effective search space used: 3858119948700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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