ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast24e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 44 0.11
2gb|AC091276.7| Mus musculus chromosome 15, clone RP23-167B4, com... 40 1.8
3emb|AL365274.17| Human DNA sequence from clone RP11-298A17 on ch... 40 1.8
4dbj|AK039483.1| Mus musculus adult male spinal cord cDNA, RIKEN ... 40 1.8
5gb|AC084617.1|CBRG44G18 Caenorhabditis briggsae cosmid G44G18, c... 40 1.8
6ref|NM_133766.2| Mus musculus RIKEN cDNA C920006C10 gene (C92000... 40 1.8
7dbj|AB158474.1| Mus musculus KIAA0143 mRNA for similar to conser... 40 1.8
8gb|AC107757.15| Mus musculus chromosome 15, clone RP23-207L14, c... 38 7.0
9gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 38 7.0
10gb|AC145818.1| Pan troglodytes BAC clone RP43-8O12 from 7, compl... 38 7.0
11emb|Z70688.1|HSN27C5 Human DNA sequence from clone LL22NC03-27C5... 38 7.0
12emb|AL133383.10| Human DNA sequence from clone GS1-204I12 on chr... 38 7.0
13gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 38 7.0
14gb|AC078846.2|AC078846 Homo sapiens chromosome 7 clone RP11-448A... 38 7.0

>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 100     tggttccttggctgttcttgttcaat 125
               ||||||||||||||||||| ||||||
Sbjct: 5428256 tggttccttggctgttctttttcaat 5428231



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>gb|AC091276.7| Mus musculus chromosome 15, clone RP23-167B4, complete sequence
          Length = 255663

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    tcaataaaaccagttgggtc 140
              ||||||||||||||||||||
Sbjct: 119578 tcaataaaaccagttgggtc 119559



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>emb|AL365274.17| Human DNA sequence from clone RP11-298A17 on chromosome 9 Contains the
             DAB2IP gene for DAB2 interacting protein (AF9Q34, DIP1/2,
             KIAA1743) and four CpG islands, complete sequence
          Length = 171941

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   ccttggctgttcttgttcaa 124
             ||||||||||||||||||||
Sbjct: 50760 ccttggctgttcttgttcaa 50779



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>dbj|AK039483.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched
            library, clone:A330049K02 product:unclassifiable, full
            insert sequence
          Length = 1688

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 121  tcaataaaaccagttgggtc 140
            ||||||||||||||||||||
Sbjct: 1186 tcaataaaaccagttgggtc 1167



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>gb|AC084617.1|CBRG44G18 Caenorhabditis briggsae cosmid G44G18, complete sequence
          Length = 42360

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    gatccttacaagttgcaagg 30
             ||||||||||||||||||||
Sbjct: 37050 gatccttacaagttgcaagg 37069



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>ref|NM_133766.2| Mus musculus RIKEN cDNA C920006C10 gene (C920006C10Rik), mRNA
          Length = 5225

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 121  tcaataaaaccagttgggtc 140
            ||||||||||||||||||||
Sbjct: 4658 tcaataaaaccagttgggtc 4639



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>dbj|AB158474.1| Mus musculus KIAA0143 mRNA for similar to conserved membrane protein
            at 44E, complete cds
          Length = 5225

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 121  tcaataaaaccagttgggtc 140
            ||||||||||||||||||||
Sbjct: 4658 tcaataaaaccagttgggtc 4639



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>gb|AC107757.15| Mus musculus chromosome 15, clone RP23-207L14, complete sequence
          Length = 208483

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 119    gttcaataaaaccagttgg 137
              |||||||||||||||||||
Sbjct: 142525 gttcaataaaaccagttgg 142543



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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 117     ttgttcaataaaaccagtt 135
               |||||||||||||||||||
Sbjct: 3424584 ttgttcaataaaaccagtt 3424566



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>gb|AC145818.1| Pan troglodytes BAC clone RP43-8O12 from 7, complete sequence
          Length = 92193

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 81    gctacatgctaatgaggaa 99
             |||||||||||||||||||
Sbjct: 24355 gctacatgctaatgaggaa 24337



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>emb|Z70688.1|HSN27C5 Human DNA sequence from clone LL22NC03-27C5 on chromosome 22, complete
             sequence
          Length = 41375

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 104   tccttggctgttcttgttc 122
             |||||||||||||||||||
Sbjct: 20615 tccttggctgttcttgttc 20597



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>emb|AL133383.10| Human DNA sequence from clone GS1-204I12 on chromosome 1 Contains two
             novel genes, complete sequence
          Length = 204158

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 94    gaggaatggttccttggct 112
             |||||||||||||||||||
Sbjct: 44837 gaggaatggttccttggct 44855



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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 37      ggactgatcgagaatggaa 55
               |||||||||||||||||||
Sbjct: 1487955 ggactgatcgagaatggaa 1487937



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>gb|AC078846.2|AC078846 Homo sapiens chromosome 7 clone RP11-448A19, complete sequence
          Length = 219428

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 81     gctacatgctaatgaggaa 99
              |||||||||||||||||||
Sbjct: 136535 gctacatgctaatgaggaa 136553


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,069,414
Number of Sequences: 3902068
Number of extensions: 1069414
Number of successful extensions: 73738
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73695
Number of HSP's gapped (non-prelim): 43
length of query: 146
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 125
effective length of database: 17,151,101,840
effective search space: 2143887730000
effective search space used: 2143887730000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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