ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast24d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VSR5_ARATH (O64758) Vacuolar sorting receptor 5 precursor (AtVSR... 33 0.29
2VSR7_ARATH (Q8L7E3) Vacuolar sorting receptor 7 precursor (AtVSR... 28 7.2

>VSR5_ARATH (O64758) Vacuolar sorting receptor 5 precursor (AtVSR5) (Epidermal|
           growth factor receptor-like protein 5) (AtELP5)
           (BP80-like protein e) (AtBP80e)
          Length = 618

 Score = 32.7 bits (73), Expect = 0.29
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -2

Query: 87  CRCPFS*TGSDIKCEQTTLCKEHN--NCDG 4
           CRCP    G  +KCE    CKE +   CDG
Sbjct: 497 CRCPLGFLGDGLKCEDIDECKEKSACKCDG 526



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>VSR7_ARATH (Q8L7E3) Vacuolar sorting receptor 7 precursor (AtVSR7) (Epidermal|
           growth factor receptor-like protein 3) (AtELP3)
           (BP80-like protein f) (AtBP80f)
          Length = 625

 Score = 28.1 bits (61), Expect = 7.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 87  CRCPFS*TGSDIKCEQTTLCKEHNNC 10
           C+CP    G  + CE    CKE + C
Sbjct: 499 CKCPEGFQGDGLTCEDINECKERSVC 524


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,750,173
Number of Sequences: 219361
Number of extensions: 147721
Number of successful extensions: 421
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 80,573,946
effective HSP length: 11
effective length of database: 78,160,975
effective search space used: 1875863400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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