| Clone Name | rbast24d07 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Y09292.1|TACYP51C1 T.aestivum mRNA for obtusifoliol 14-alpha-demethylase (CYP51), clone w51, partial Length = 1231 Score = 168 bits (85), Expect = 2e-39 Identities = 103/109 (94%) Strand = Plus / Minus Query: 1 aactccgtcacagttgttgtgttccttacatagggtcgtctgttcacattttatgtctga 60 ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1204 aactcagtcacagttgttgtgttccttacatagggttgtctgttcacattttatgtctga 1145 Query: 61 acccgtctatgagaatggacaacggcaaagatgaaaggagagacaaaca 109 ||||||||| ||||||||||| | ||||||||||||||||||| ||||| Sbjct: 1144 acccgtctaagagaatggacagcagcaaagatgaaaggagagagaaaca 1096
>emb|Y09291.1|TACYP51C6 T.aestivum mRNA for obtusifoliol 14-alpha-demethylase (CYP51), clone w516, partial Length = 1655 Score = 161 bits (81), Expect = 5e-37 Identities = 102/109 (93%) Strand = Plus / Minus Query: 1 aactccgtcacagttgttgtgttccttacatagggtcgtctgttcacattttatgtctga 60 ||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1626 aactcagtcacagctgttgtgttccttacatagggttgtctgttcacattttatgtctga 1567 Query: 61 acccgtctatgagaatggacaacggcaaagatgaaaggagagacaaaca 109 ||||||||| ||||||||||| | ||||||||||||||||||| ||||| Sbjct: 1566 acccgtctaagagaatggacagcagcaaagatgaaaggagagagaaaca 1518
>ref|XM_343768.2| PREDICTED: Rattus norvegicus transmembrane 4 superfamily member 2 (Tm4sf2), mRNA Length = 895 Score = 44.1 bits (22), Expect = 0.080 Identities = 22/22 (100%) Strand = Plus / Plus Query: 79 acaacggcaaagatgaaaggag 100 |||||||||||||||||||||| Sbjct: 521 acaacggcaaagatgaaaggag 542
>gb|BC079470.1| Rattus norvegicus transmembrane 4 superfamily member 2 (mapped), mRNA (cDNA clone IMAGE:7122763) Length = 1735 Score = 44.1 bits (22), Expect = 0.080 Identities = 22/22 (100%) Strand = Plus / Plus Query: 79 acaacggcaaagatgaaaggag 100 |||||||||||||||||||||| Sbjct: 382 acaacggcaaagatgaaaggag 403
>gb|AC139572.4| Mus musculus BAC clone RP24-196P9 from chromosome 7, complete sequence Length = 165198 Score = 40.1 bits (20), Expect = 1.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 gcaaagatgaaaggagagacaaac 108 ||||||| |||||||||||||||| Sbjct: 89097 gcaaagaagaaaggagagacaaac 89120
>gb|AC020550.4| Homo sapiens BAC clone RP11-198M19 from 2, complete sequence Length = 172813 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 tcacagttgttgtgttcctt 27 |||||||||||||||||||| Sbjct: 68645 tcacagttgttgtgttcctt 68664
>gb|AC161016.4| Pan troglodytes BAC clone CH251-347N20 from chromosome unknown, complete sequence Length = 148333 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 tcacagttgttgtgttcctt 27 |||||||||||||||||||| Sbjct: 64781 tcacagttgttgtgttcctt 64800
>gb|AC087181.9| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0018H01 map R1538, complete sequence Length = 142712 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 atgaaaggagagacaaaca 109 ||||||||||||||||||| Sbjct: 6345 atgaaaggagagacaaaca 6327
>ref|XM_603113.2| PREDICTED: Bos taurus similar to deltex 3 homolog, transcript variant 1 (LOC524779), mRNA Length = 1761 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 ccgtctatgagaatggaca 81 ||||||||||||||||||| Sbjct: 281 ccgtctatgagaatggaca 263
>ref|XM_873148.1| PREDICTED: Bos taurus similar to deltex 3 homolog, transcript variant 2 (LOC524779), mRNA Length = 1780 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 ccgtctatgagaatggaca 81 ||||||||||||||||||| Sbjct: 300 ccgtctatgagaatggaca 282
>ref|XM_877517.1| PREDICTED: Bos taurus similar to Chloride anion exchanger (DRA protein) (Down-regulated in adenoma) (Solute carrier family 26 member 3), transcript variant 4 (LOC512856), mRNA Length = 2976 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 ggacaacggcaaagatgaa 95 ||||||||||||||||||| Sbjct: 1559 ggacaacggcaaagatgaa 1541
>ref|XM_877467.1| PREDICTED: Bos taurus similar to Chloride anion exchanger (DRA protein) (Down-regulated in adenoma) (Solute carrier family 26 member 3), transcript variant 3 (LOC512856), mRNA Length = 2871 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 ggacaacggcaaagatgaa 95 ||||||||||||||||||| Sbjct: 1460 ggacaacggcaaagatgaa 1442
>ref|XM_877414.1| PREDICTED: Bos taurus similar to Chloride anion exchanger (DRA protein) (Down-regulated in adenoma) (Solute carrier family 26 member 3), transcript variant 2 (LOC512856), mRNA Length = 2674 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 ggacaacggcaaagatgaa 95 ||||||||||||||||||| Sbjct: 1541 ggacaacggcaaagatgaa 1523
>ref|XM_590450.2| PREDICTED: Bos taurus similar to Chloride anion exchanger (DRA protein) (Down-regulated in adenoma) (Solute carrier family 26 member 3), transcript variant 1 (LOC512856), mRNA Length = 2958 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 ggacaacggcaaagatgaa 95 ||||||||||||||||||| Sbjct: 1541 ggacaacggcaaagatgaa 1523
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 atgaaaggagagacaaaca 109 ||||||||||||||||||| Sbjct: 28406696 atgaaaggagagacaaaca 28406714
>gb|AC122490.3| Mus musculus BAC clone RP24-388D8 from chromosome 3, complete sequence Length = 140465 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 86 caaagatgaaaggagagac 104 ||||||||||||||||||| Sbjct: 100301 caaagatgaaaggagagac 100319
>gb|AC124775.4| Mus musculus BAC clone RP23-60N3 from 7, complete sequence Length = 234834 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 83 cggcaaagatgaaaggaga 101 ||||||||||||||||||| Sbjct: 110533 cggcaaagatgaaaggaga 110515
>gb|AC111087.9| Mus musculus chromosome 9, clone RP23-152O16, complete sequence Length = 231508 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 85 gcaaagatgaaaggagaga 103 ||||||||||||||||||| Sbjct: 18772 gcaaagatgaaaggagaga 18790
>emb|AL392046.11| Human DNA sequence from clone RP11-297A16 on chromosome 10 Contains the gene for cullin 2 (CUL2), a novel gene and a CpG island, complete sequence Length = 148271 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 atgaaaggagagacaaaca 109 ||||||||||||||||||| Sbjct: 52322 atgaaaggagagacaaaca 52340
>gb|AC156391.6| Mus musculus 10 BAC RP24-258P4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 186703 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 86 caaagatgaaaggagagac 104 ||||||||||||||||||| Sbjct: 79647 caaagatgaaaggagagac 79665
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 atgaaaggagagacaaaca 109 ||||||||||||||||||| Sbjct: 28498020 atgaaaggagagacaaaca 28498038
>gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete sequence Length = 143681 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 atgaaaggagagacaaaca 109 ||||||||||||||||||| Sbjct: 826 atgaaaggagagacaaaca 844
>gb|AC159137.8| Mus musculus 10 BAC RP23-9N9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 207728 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 86 caaagatgaaaggagagac 104 ||||||||||||||||||| Sbjct: 155880 caaagatgaaaggagagac 155898
>dbj|AP005530.3| Homo sapiens genomic DNA, chromosome 18 clone:CMF18-87P17, complete sequence Length = 35420 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 ttcacattttatgtctgaa 61 ||||||||||||||||||| Sbjct: 23540 ttcacattttatgtctgaa 23558
>dbj|AP001005.6| Homo sapiens genomic DNA, chromosome 18 clone:RP11-683L23, complete sequence Length = 137001 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 ttcacattttatgtctgaa 61 ||||||||||||||||||| Sbjct: 17581 ttcacattttatgtctgaa 17599
>gb|AC159824.2| Mus musculus BAC clone RP23-122E19 from chromosome 9, complete sequence Length = 225745 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 gcaaagatgaaaggagaga 103 ||||||||||||||||||| Sbjct: 64724 gcaaagatgaaaggagaga 64706 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 969,195 Number of Sequences: 3902068 Number of extensions: 969195 Number of successful extensions: 63021 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62964 Number of HSP's gapped (non-prelim): 57 length of query: 109 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 88 effective length of database: 17,151,101,840 effective search space: 1509296961920 effective search space used: 1509296961920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)