ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast24d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|Y09292.1|TACYP51C1 T.aestivum mRNA for obtusifoliol 14-alpha... 168 2e-39
2emb|Y09291.1|TACYP51C6 T.aestivum mRNA for obtusifoliol 14-alpha... 161 5e-37
3ref|XM_343768.2| PREDICTED: Rattus norvegicus transmembrane 4 su... 44 0.080
4gb|BC079470.1| Rattus norvegicus transmembrane 4 superfamily mem... 44 0.080
5gb|AC139572.4| Mus musculus BAC clone RP24-196P9 from chromosome... 40 1.2
6gb|AC020550.4| Homo sapiens BAC clone RP11-198M19 from 2, comple... 40 1.2
7gb|AC161016.4| Pan troglodytes BAC clone CH251-347N20 from chrom... 40 1.2
8gb|AC087181.9| Oryza sativa (japonica cultivar-group) chromosome... 38 4.9
9ref|XM_603113.2| PREDICTED: Bos taurus similar to deltex 3 homol... 38 4.9
10ref|XM_873148.1| PREDICTED: Bos taurus similar to deltex 3 homol... 38 4.9
11ref|XM_877517.1| PREDICTED: Bos taurus similar to Chloride anion... 38 4.9
12ref|XM_877467.1| PREDICTED: Bos taurus similar to Chloride anion... 38 4.9
13ref|XM_877414.1| PREDICTED: Bos taurus similar to Chloride anion... 38 4.9
14ref|XM_590450.2| PREDICTED: Bos taurus similar to Chloride anion... 38 4.9
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 4.9
16gb|AC122490.3| Mus musculus BAC clone RP24-388D8 from chromosome... 38 4.9
17gb|AC124775.4| Mus musculus BAC clone RP23-60N3 from 7, complete... 38 4.9
18gb|AC111087.9| Mus musculus chromosome 9, clone RP23-152O16, com... 38 4.9
19emb|AL392046.11| Human DNA sequence from clone RP11-297A16 on ch... 38 4.9
20gb|AC156391.6| Mus musculus 10 BAC RP24-258P4 (Roswell Park Canc... 38 4.9
21dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.9
22gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033... 38 4.9
23gb|AC159137.8| Mus musculus 10 BAC RP23-9N9 (Roswell Park Cancer... 38 4.9
24dbj|AP005530.3| Homo sapiens genomic DNA, chromosome 18 clone:CM... 38 4.9
25dbj|AP001005.6| Homo sapiens genomic DNA, chromosome 18 clone:RP... 38 4.9
26gb|AC159824.2| Mus musculus BAC clone RP23-122E19 from chromosom... 38 4.9

>emb|Y09292.1|TACYP51C1 T.aestivum mRNA for obtusifoliol 14-alpha-demethylase (CYP51), clone
            w51, partial
          Length = 1231

 Score =  168 bits (85), Expect = 2e-39
 Identities = 103/109 (94%)
 Strand = Plus / Minus

                                                                        
Query: 1    aactccgtcacagttgttgtgttccttacatagggtcgtctgttcacattttatgtctga 60
            ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1204 aactcagtcacagttgttgtgttccttacatagggttgtctgttcacattttatgtctga 1145

                                                             
Query: 61   acccgtctatgagaatggacaacggcaaagatgaaaggagagacaaaca 109
            ||||||||| ||||||||||| | ||||||||||||||||||| |||||
Sbjct: 1144 acccgtctaagagaatggacagcagcaaagatgaaaggagagagaaaca 1096



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>emb|Y09291.1|TACYP51C6 T.aestivum mRNA for obtusifoliol 14-alpha-demethylase (CYP51), clone
            w516, partial
          Length = 1655

 Score =  161 bits (81), Expect = 5e-37
 Identities = 102/109 (93%)
 Strand = Plus / Minus

                                                                        
Query: 1    aactccgtcacagttgttgtgttccttacatagggtcgtctgttcacattttatgtctga 60
            ||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1626 aactcagtcacagctgttgtgttccttacatagggttgtctgttcacattttatgtctga 1567

                                                             
Query: 61   acccgtctatgagaatggacaacggcaaagatgaaaggagagacaaaca 109
            ||||||||| ||||||||||| | ||||||||||||||||||| |||||
Sbjct: 1566 acccgtctaagagaatggacagcagcaaagatgaaaggagagagaaaca 1518



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>ref|XM_343768.2| PREDICTED: Rattus norvegicus transmembrane 4 superfamily member 2
           (Tm4sf2), mRNA
          Length = 895

 Score = 44.1 bits (22), Expect = 0.080
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 79  acaacggcaaagatgaaaggag 100
           ||||||||||||||||||||||
Sbjct: 521 acaacggcaaagatgaaaggag 542



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>gb|BC079470.1| Rattus norvegicus transmembrane 4 superfamily member 2 (mapped),
           mRNA (cDNA clone IMAGE:7122763)
          Length = 1735

 Score = 44.1 bits (22), Expect = 0.080
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 79  acaacggcaaagatgaaaggag 100
           ||||||||||||||||||||||
Sbjct: 382 acaacggcaaagatgaaaggag 403



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>gb|AC139572.4| Mus musculus BAC clone RP24-196P9 from chromosome 7, complete sequence
          Length = 165198

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 85    gcaaagatgaaaggagagacaaac 108
             ||||||| ||||||||||||||||
Sbjct: 89097 gcaaagaagaaaggagagacaaac 89120



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>gb|AC020550.4| Homo sapiens BAC clone RP11-198M19 from 2, complete sequence
          Length = 172813

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     tcacagttgttgtgttcctt 27
             ||||||||||||||||||||
Sbjct: 68645 tcacagttgttgtgttcctt 68664



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>gb|AC161016.4| Pan troglodytes BAC clone CH251-347N20 from chromosome unknown,
             complete sequence
          Length = 148333

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     tcacagttgttgtgttcctt 27
             ||||||||||||||||||||
Sbjct: 64781 tcacagttgttgtgttcctt 64800



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>gb|AC087181.9| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0018H01 map R1538, complete sequence
          Length = 142712

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 91   atgaaaggagagacaaaca 109
            |||||||||||||||||||
Sbjct: 6345 atgaaaggagagacaaaca 6327



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>ref|XM_603113.2| PREDICTED: Bos taurus similar to deltex 3 homolog, transcript
           variant 1 (LOC524779), mRNA
          Length = 1761

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 63  ccgtctatgagaatggaca 81
           |||||||||||||||||||
Sbjct: 281 ccgtctatgagaatggaca 263



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>ref|XM_873148.1| PREDICTED: Bos taurus similar to deltex 3 homolog, transcript
           variant 2 (LOC524779), mRNA
          Length = 1780

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 63  ccgtctatgagaatggaca 81
           |||||||||||||||||||
Sbjct: 300 ccgtctatgagaatggaca 282



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>ref|XM_877517.1| PREDICTED: Bos taurus similar to Chloride anion exchanger (DRA
            protein) (Down-regulated in adenoma) (Solute carrier
            family 26 member 3), transcript variant 4 (LOC512856),
            mRNA
          Length = 2976

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 77   ggacaacggcaaagatgaa 95
            |||||||||||||||||||
Sbjct: 1559 ggacaacggcaaagatgaa 1541



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>ref|XM_877467.1| PREDICTED: Bos taurus similar to Chloride anion exchanger (DRA
            protein) (Down-regulated in adenoma) (Solute carrier
            family 26 member 3), transcript variant 3 (LOC512856),
            mRNA
          Length = 2871

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 77   ggacaacggcaaagatgaa 95
            |||||||||||||||||||
Sbjct: 1460 ggacaacggcaaagatgaa 1442



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>ref|XM_877414.1| PREDICTED: Bos taurus similar to Chloride anion exchanger (DRA
            protein) (Down-regulated in adenoma) (Solute carrier
            family 26 member 3), transcript variant 2 (LOC512856),
            mRNA
          Length = 2674

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 77   ggacaacggcaaagatgaa 95
            |||||||||||||||||||
Sbjct: 1541 ggacaacggcaaagatgaa 1523



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>ref|XM_590450.2| PREDICTED: Bos taurus similar to Chloride anion exchanger (DRA
            protein) (Down-regulated in adenoma) (Solute carrier
            family 26 member 3), transcript variant 1 (LOC512856),
            mRNA
          Length = 2958

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 77   ggacaacggcaaagatgaa 95
            |||||||||||||||||||
Sbjct: 1541 ggacaacggcaaagatgaa 1523



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 91       atgaaaggagagacaaaca 109
                |||||||||||||||||||
Sbjct: 28406696 atgaaaggagagacaaaca 28406714



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>gb|AC122490.3| Mus musculus BAC clone RP24-388D8 from chromosome 3, complete sequence
          Length = 140465

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 86     caaagatgaaaggagagac 104
              |||||||||||||||||||
Sbjct: 100301 caaagatgaaaggagagac 100319



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>gb|AC124775.4| Mus musculus BAC clone RP23-60N3 from 7, complete sequence
          Length = 234834

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 83     cggcaaagatgaaaggaga 101
              |||||||||||||||||||
Sbjct: 110533 cggcaaagatgaaaggaga 110515



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>gb|AC111087.9| Mus musculus chromosome 9, clone RP23-152O16, complete sequence
          Length = 231508

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 85    gcaaagatgaaaggagaga 103
             |||||||||||||||||||
Sbjct: 18772 gcaaagatgaaaggagaga 18790



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>emb|AL392046.11| Human DNA sequence from clone RP11-297A16 on chromosome 10 Contains the
             gene for cullin 2 (CUL2), a novel gene and a CpG island,
             complete sequence
          Length = 148271

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 91    atgaaaggagagacaaaca 109
             |||||||||||||||||||
Sbjct: 52322 atgaaaggagagacaaaca 52340



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>gb|AC156391.6| Mus musculus 10 BAC RP24-258P4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 186703

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 86    caaagatgaaaggagagac 104
             |||||||||||||||||||
Sbjct: 79647 caaagatgaaaggagagac 79665



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 91       atgaaaggagagacaaaca 109
                |||||||||||||||||||
Sbjct: 28498020 atgaaaggagagacaaaca 28498038



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>gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence,
           complete sequence
          Length = 143681

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 91  atgaaaggagagacaaaca 109
           |||||||||||||||||||
Sbjct: 826 atgaaaggagagacaaaca 844



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>gb|AC159137.8| Mus musculus 10 BAC RP23-9N9 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 207728

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 86     caaagatgaaaggagagac 104
              |||||||||||||||||||
Sbjct: 155880 caaagatgaaaggagagac 155898



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>dbj|AP005530.3| Homo sapiens genomic DNA, chromosome 18 clone:CMF18-87P17, complete
             sequence
          Length = 35420

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 43    ttcacattttatgtctgaa 61
             |||||||||||||||||||
Sbjct: 23540 ttcacattttatgtctgaa 23558



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>dbj|AP001005.6| Homo sapiens genomic DNA, chromosome 18 clone:RP11-683L23, complete
             sequence
          Length = 137001

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 43    ttcacattttatgtctgaa 61
             |||||||||||||||||||
Sbjct: 17581 ttcacattttatgtctgaa 17599



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>gb|AC159824.2| Mus musculus BAC clone RP23-122E19 from chromosome 9, complete sequence
          Length = 225745

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 85    gcaaagatgaaaggagaga 103
             |||||||||||||||||||
Sbjct: 64724 gcaaagatgaaaggagaga 64706


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 969,195
Number of Sequences: 3902068
Number of extensions: 969195
Number of successful extensions: 63021
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62964
Number of HSP's gapped (non-prelim): 57
length of query: 109
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 88
effective length of database: 17,151,101,840
effective search space: 1509296961920
effective search space used: 1509296961920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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