| Clone Name | rbast24c10 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (XEA) Length = 1174 Score = 262 bits (132), Expect = 3e-67 Identities = 141/144 (97%) Strand = Plus / Minus Query: 1 attacacacgatctgaacgtgacaaggagcaaacagaggaatctaccacccgctccattt 60 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1129 attacacacgatctgaacgtgacaaggagcaaacagaagaatctaccacccgctccattt 1070 Query: 61 cacattatcccccctcactggtccttatttatcatacagtacaatacagacgcccccatc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1069 cacattatcccccctcactggtccttatttatcatacagtacaatacagacgcccccatc 1010 Query: 121 ttccctatccccggccgtgttcct 144 ||||||||| |||||||| ||||| Sbjct: 1009 ttccctatctccggccgtcttcct 986
>gb|BC090193.1| Xenopus laevis cDNA clone MGC:85054 IMAGE:6327047, complete cds Length = 1785 Score = 42.1 bits (21), Expect = 0.44 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 tggtccttatttatcatacag 99 ||||||||||||||||||||| Sbjct: 1462 tggtccttatttatcatacag 1442
>emb|AL590111.14| Human DNA sequence from clone RP11-570F3 on chromosome 10 Contains part of a novel gene (FLJ30499) and the 3' end of a novel gene (FLJ30450), complete sequence Length = 41069 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 ctcactggtccttatttatc 93 |||||||||||||||||||| Sbjct: 3262 ctcactggtccttatttatc 3243
>emb|BX571768.19| Zebrafish DNA sequence from clone DKEYP-2C4 in linkage group 11, complete sequence Length = 111222 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tatttatcatacagtacaat 105 |||||||||||||||||||| Sbjct: 36635 tatttatcatacagtacaat 36616
>gb|AC152889.1| Ornithorhynchus anatinus chromosome UNK clone OABb-513A1, complete sequence Length = 115833 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 27 gagcaaacagaggaatcta 45 ||||||||||||||||||| Sbjct: 65926 gagcaaacagaggaatcta 65944
>gb|AY396716.1| Caenorhabditis elegans DAF-15 (daf-15) mRNA, complete cds Length = 5403 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 aacagaggaatctaccacc 50 ||||||||||||||||||| Sbjct: 800 aacagaggaatctaccacc 818
>gb|AY448326.1| Colobus guereza clone OLG_69 olfactory receptor-like protein gene, partial sequence Length = 664 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 tgacaaggagcaaacagag 38 ||||||||||||||||||| Sbjct: 382 tgacaaggagcaaacagag 400
>emb|Z68214.1|CEC10C5 Caenorhabditis elegans Cosmid C10C5, complete sequence Length = 34224 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 aacagaggaatctaccacc 50 ||||||||||||||||||| Sbjct: 28439 aacagaggaatctaccacc 28457
>emb|AL009147.1|DMC171D11 Drosophila melanogaster cosmid clone 171D11 Length = 35000 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 atctaccacccgctccatt 59 ||||||||||||||||||| Sbjct: 4764 atctaccacccgctccatt 4746
>gb|AC158633.7| Mus musculus 10 BAC RP23-407I4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206282 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 82 tccttatttatcatacagt 100 ||||||||||||||||||| Sbjct: 109322 tccttatttatcatacagt 109304
>gb|AC084083.10| Homo sapiens chromosome 8, clone RP11-550A5, complete sequence Length = 209859 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 113 cccccatcttccctatccc 131 ||||||||||||||||||| Sbjct: 120475 cccccatcttccctatccc 120457
>gb|AC105774.8| Drosophila melanogaster X BAC RP98-8O5 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170186 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 atctaccacccgctccatt 59 ||||||||||||||||||| Sbjct: 80976 atctaccacccgctccatt 80958
>ref|NM_166843.3| Drosophila melanogaster CG18166-RA, transcript variant A (CG18166), mRNA Length = 1822 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 atctaccacccgctccatt 59 ||||||||||||||||||| Sbjct: 160 atctaccacccgctccatt 178
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 27 gagcaaacagaggaatcta 45 ||||||||||||||||||| Sbjct: 242083 gagcaaacagaggaatcta 242065
>gb|AY059436.1| Drosophila melanogaster GH02584 full length cDNA Length = 1849 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 atctaccacccgctccatt 59 ||||||||||||||||||| Sbjct: 160 atctaccacccgctccatt 178
>ref|NM_069252.2| Caenorhabditis elegans abnormal DAuer Formation family member (daf-15) (daf-15) mRNA, complete cds Length = 5738 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 aacagaggaatctaccacc 50 ||||||||||||||||||| Sbjct: 728 aacagaggaatctaccacc 746
>ref|NM_069253.2| Caenorhabditis elegans abnormal DAuer Formation family member (daf-15) (daf-15) mRNA, complete cds Length = 5403 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 aacagaggaatctaccacc 50 ||||||||||||||||||| Sbjct: 800 aacagaggaatctaccacc 818
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 93 catacagtacaatacagac 111 ||||||||||||||||||| Sbjct: 22459477 catacagtacaatacagac 22459495
>dbj|AP005800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0016D04 Length = 147313 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 93 catacagtacaatacagac 111 ||||||||||||||||||| Sbjct: 29833 catacagtacaatacagac 29851
>gb|AE003417.4| Drosophila melanogaster chromosome X, section 1 of 74 of the complete sequence Length = 387740 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 atctaccacccgctccatt 59 ||||||||||||||||||| Sbjct: 338459 atctaccacccgctccatt 338441
>emb|CT025692.15| Mouse DNA sequence from clone RP23-312G18 on chromosome 17, complete sequence Length = 177741 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 111 cgcccccatcttccctatc 129 ||||||||||||||||||| Sbjct: 26578 cgcccccatcttccctatc 26596
>gb|AC104431.2| Homo sapiens chromosome 8 clone RP11-550A5 map 8q24.2, complete sequence Length = 209870 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 113 cccccatcttccctatccc 131 ||||||||||||||||||| Sbjct: 89384 cccccatcttccctatccc 89402 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,155,921 Number of Sequences: 3902068 Number of extensions: 1155921 Number of successful extensions: 67796 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67731 Number of HSP's gapped (non-prelim): 65 length of query: 144 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 123 effective length of database: 17,151,101,840 effective search space: 2109585526320 effective search space used: 2109585526320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)