ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast24b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SPEE_STRR6 (P66836) Spermidine synthase (EC 2.5.1.16) (Putrescin... 29 2.4
2SPEE_STRPN (P66835) Spermidine synthase (EC 2.5.1.16) (Putrescin... 29 2.4
3P3_HUMAN (P09131) P3 protein (Solute carrier family 10 member 3) 28 4.1
4O5AS1_HUMAN (Q8N127) Olfactory receptor 5AS1 28 5.4
5LYS_ANTMY (Q7SID7) Lysozyme (EC 3.2.1.17) (1,4-beta-N-acetylmura... 28 5.4
6MPS1_YEAST (P54199) Serine/threonine-protein kinase MPS1 (EC 2.7... 27 9.2

>SPEE_STRR6 (P66836) Spermidine synthase (EC 2.5.1.16) (Putrescine|
           aminopropyltransferase) (SPDSY)
          Length = 286

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -3

Query: 91  LFTEVFTENHHVGTSMLP*Y 32
           LFTE +T N HVG  MLP Y
Sbjct: 255 LFTEYYTANLHVGAFMLPKY 274



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>SPEE_STRPN (P66835) Spermidine synthase (EC 2.5.1.16) (Putrescine|
           aminopropyltransferase) (SPDSY)
          Length = 286

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -3

Query: 91  LFTEVFTENHHVGTSMLP*Y 32
           LFTE +T N HVG  MLP Y
Sbjct: 255 LFTEYYTANLHVGAFMLPKY 274



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>P3_HUMAN (P09131) P3 protein (Solute carrier family 10 member 3)|
          Length = 477

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +2

Query: 95  LVVDVESYSTRQQVDIVGNTGWRRPKPML----LLYKLPWHALSYYSLPRCTAKSHQLPP 262
           +V+  +  S++Q   + G  G   P  ML    LL  LPW A    S    TA  H +PP
Sbjct: 1   MVLMQDKGSSQQWPGLGGEGGGTGPLSMLRAALLLISLPWGAQGTASTSLSTAGGHTVPP 60



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>O5AS1_HUMAN (Q8N127) Olfactory receptor 5AS1|
          Length = 324

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 23  FKLVSWEHRSSHVVVFRKYFCKQVLVVDVESYSTRQQ 133
           F L S+   S+ VV+F  YFC  + V+ ++S   R +
Sbjct: 200 FALCSFIQTSTFVVIFISYFCILITVLSIKSSGGRSK 236



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>LYS_ANTMY (Q7SID7) Lysozyme (EC 3.2.1.17) (1,4-beta-N-acetylmuramidase)|
          Length = 120

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
 Frame = -1

Query: 135 TCCLVLYDSTSTTSTCLQKYLRKT-----TTWELRCSH 37
           TC  +L D  +  STC +K  ++T     + W+  C+H
Sbjct: 75  TCSQLLTDDITVASTCAKKIYKRTKFDAWSGWDNHCNH 112



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>MPS1_YEAST (P54199) Serine/threonine-protein kinase MPS1 (EC 2.7.12.2)|
           (Regulatory cell proliferation kinase 1)
          Length = 764

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 92  LVYRSIYGKPPRGNF 48
           ++Y+ IYGKPP G+F
Sbjct: 643 IIYQMIYGKPPYGSF 657


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,934,932
Number of Sequences: 219361
Number of extensions: 898976
Number of successful extensions: 1850
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1850
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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