>gb|AC182737.1| Gasterosteus aculeatus clone VMRC26-154C03, complete sequence
          Length = 109447

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 301   cgggacgggtggcgccctcggct 323
             |||||||||||||||||||||||
Sbjct: 74846 cgggacgggtggcgccctcggct 74868

>gb|AY023196.1| Oryza sativa microsatellite MRG5521 containing (GCG)X9, genomic
           sequence
          Length = 227

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 292 cggcggcggcgggacgggtgg 312
           |||||||||||||||||||||
Sbjct: 12  cggcggcggcgggacgggtgg 32

>gb|AC021657.19| Homo sapiens 3 BAC RP11-490B19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 170046

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     tatttaaatatggatgtttca 26
             |||||||||||||||||||||
Sbjct: 57176 tatttaaatatggatgtttca 57156

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 292     cggcggcggcgggacgggtgg 312
               |||||||||||||||||||||
Sbjct: 4126441 cggcggcggcgggacgggtgg 4126421

>dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0509B06
          Length = 104515

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 292   cggcggcggcgggacgggtgg 312
             |||||||||||||||||||||
Sbjct: 93184 cggcggcggcgggacgggtgg 93164

>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0406H10
          Length = 156419

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 292   cggcggcggcgggacgggtgg 312
             |||||||||||||||||||||
Sbjct: 73412 cggcggcggcgggacgggtgg 73392

>gb|AC110302.4| Mus musculus BAC clone RP24-194G21 from 12, complete sequence
          Length = 168601

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     aaatatttaaatatggatgt 22
             ||||||||||||||||||||
Sbjct: 45749 aaatatttaaatatggatgt 45768

>ref|XM_661521.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.10349)
           partial mRNA
          Length = 2538

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   aaatatttaaatatggatgt 22
           ||||||||||||||||||||
Sbjct: 628 aaatatttaaatatggatgt 609

>gb|AC136443.3| Homo sapiens chromosome 16 clone RP11-719K4, complete sequence
          Length = 193377

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   ccctctcatattattcgtta 226
             ||||||||||||||||||||
Sbjct: 75580 ccctctcatattattcgtta 75561

>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 293    ggcggcggcgggacgggtggcgcc 316
              ||||| ||||||||||||||||||
Sbjct: 336290 ggcgggggcgggacgggtggcgcc 336267

>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14
          Length = 255260

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 293    ggcggcggcgggacgggtggcgcc 316
              ||||| ||||||||||||||||||
Sbjct: 128683 ggcgggggcgggacgggtggcgcc 128660

>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12
          Length = 257701

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 293    ggcggcggcgggacgggtggcgcc 316
              ||||| ||||||||||||||||||
Sbjct: 169474 ggcgggggcgggacgggtggcgcc 169451

>gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, complete sequence
          Length = 168794

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 291   ccggcggcggcgggacgggtggcg 314
             ||||||||||||| ||||||||||
Sbjct: 31644 ccggcggcggcggcacgggtggcg 31667

>gb|AC090433.10| Chlamydomonas reinhardtii clone cr-19b23, complete sequence
          Length = 118183

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 291   ccggcggcggcgggacgggtggcg 314
             ||||||||||||| ||||||||||
Sbjct: 91626 ccggcggcggcggcacgggtggcg 91649

>dbj|AB014344.1| Oryza rufipogon endornavirus genomic RNA, complete genome
          Length = 13936

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 3    aaatatttaaatatggatgt 22
            ||||||||||||||||||||
Sbjct: 2097 aaatatttaaatatggatgt 2078

>gb|AC020757.5| Homo sapiens chromosome 16 clone CTD-2270E3, complete sequence
          Length = 159153

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    ccctctcatattattcgtta 226
              ||||||||||||||||||||
Sbjct: 113539 ccctctcatattattcgtta 113558

>ref|XM_628127.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd1_3110),
           partial mRNA
          Length = 2538

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   aaatatttaaatatggatgt 22
           ||||||||||||||||||||
Sbjct: 628 aaatatttaaatatggatgt 609

>dbj|AK085248.1| Mus musculus 13 days embryo stomach cDNA, RIKEN full-length enriched
            library, clone:D530050C16 product:unclassifiable, full
            insert sequence
          Length = 3319

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 3    aaatatttaaatatggatgt 22
            ||||||||||||||||||||
Sbjct: 3105 aaatatttaaatatggatgt 3086

>emb|CR354319.1| Gallus gallus finished cDNA, clone ChEST73j12
          Length = 2206

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 317 ctcggctcgtgccgcggcgc 336
           ||||||||||||||||||||
Sbjct: 44  ctcggctcgtgccgcggcgc 25

>gb|AC138969.2| Homo sapiens chromosome 16 clone RP11-958N24, complete sequence
          Length = 216759

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 207    ccctctcatattattcgtta 226
              ||||||||||||||||||||
Sbjct: 161409 ccctctcatattattcgtta 161390

>gb|AC136624.3| Homo sapiens chromosome 16 clone RP11-517A5, complete sequence
          Length = 211896

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   ccctctcatattattcgtta 226
             ||||||||||||||||||||
Sbjct: 75259 ccctctcatattattcgtta 75240

>gb|AC139236.1| Homo sapiens chromosome 16 clone RP11-1314D11, complete sequence
          Length = 199021

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    ccctctcatattattcgtta 226
              ||||||||||||||||||||
Sbjct: 136298 ccctctcatattattcgtta 136317

>gb|AC136618.3| Homo sapiens chromosome 16 clone RP11-457I16, complete sequence
          Length = 172180

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   ccctctcatattattcgtta 226
             ||||||||||||||||||||
Sbjct: 80236 ccctctcatattattcgtta 80217

>gb|AC130465.2| Homo sapiens chromosome 16 clone CTA-962B4, complete sequence
          Length = 173911

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    ccctctcatattattcgtta 226
              ||||||||||||||||||||
Sbjct: 108274 ccctctcatattattcgtta 108293

>gb|U91318.1|HUU91318 Human chromosome 16 BAC clone CIT987SK-A-962B4, complete sequence
          Length = 172984

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    ccctctcatattattcgtta 226
              ||||||||||||||||||||
Sbjct: 107346 ccctctcatattattcgtta 107365

>emb|BX649429.13| Zebrafish DNA sequence from clone DKEY-1H4 in linkage group 7, complete
              sequence
          Length = 268480

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      atatttaaatatggatgttt 24
              ||||||||||||||||||||
Sbjct: 163373 atatttaaatatggatgttt 163392

>emb|AL138539.7|CNS01DWV Human chromosome 14 DNA sequence BAC C-2588C21 of library CalTech-D
            from chromosome 14 of Homo sapiens (Human), complete
            sequence
          Length = 150350

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 137  gatatagttggaaatacagg 156
            ||||||||||||||||||||
Sbjct: 3029 gatatagttggaaatacagg 3010

>gb|L10720.1|BPETOXOP Bordetella pertussis toxin liberation operon
          Length = 9342

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 293  ggcggcggcgggacgggtggcgcc 316
            ||||| ||||||||||||||||||
Sbjct: 6528 ggcgggggcgggacgggtggcgcc 6505

>emb|AL627347.10| Mouse DNA sequence from clone RP23-120A10 on chromosome 4, complete
             sequence
          Length = 144239

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     aaatatttaaatatggatgt 22
             ||||||||||||||||||||
Sbjct: 76963 aaatatttaaatatggatgt 76982


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,392,686
Number of Sequences: 3902068
Number of extensions: 3392686
Number of successful extensions: 67922
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67797
Number of HSP's gapped (non-prelim): 125
length of query: 378
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 356
effective length of database: 17,147,199,772
effective search space: 6104403118832
effective search space used: 6104403118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)