>RPGR1_MOUSE (Q9EPQ2) X-linked retinitis pigmentosa GTPase regulator-interacting|
           protein 1 (RPGR-interacting protein 1)
          Length = 1331

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 244 APSAPPCSCHPGRNPHARRTCRPPAQAQAQ 333
           +PSAPP +  PGR  H +R C   A   AQ
Sbjct: 109 SPSAPPRAPVPGRKAHVQRLCPSTAVGSAQ 138

>YG36_BPMV4 (Q04776) Hypothetical 9.5 kDa protein in G34 3'region (ORF6)|
          Length = 85

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 366 TAAHSRSTLQRLCLCLCRWPAGTTRVGVTPGVAA 265
           T  H  +   R  L LC+WP GT     TPG AA
Sbjct: 51  TGVHYTAKYARAVLRLCKWPPGTNY--STPGTAA 82

>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
 Frame = +1

Query: 220 PADQTGALAPSAPPCSCHPGR-------NPHAR-RTCRPPAQAQAQALESTAAVGCGRGC 375
           PA  +G+  PSA P    P R        P AR RT  PPAQ  A      AA    RG 
Sbjct: 174 PASSSGSPGPSAAPRRWSPARGDPVGEPGPAARPRTPAPPAQPAA-----VAAAPARRGP 228

Query: 376 SCPA 387
           + PA
Sbjct: 229 ASPA 232

>TXF8_DENAN (P01404) Toxin F-VIII precursor (Toxin TA2) (Toxin DaF8)|
          Length = 81

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 262 CSCHPGRNPHARRTCRPPAQAQAQALESTAAVGCGRGCSCPAR 390
           C  H    P A  TC        +++    A+  GRGC CP++
Sbjct: 24  CYSHKTPQPSATITCEEKT-CYKKSVRKLPAIVAGRGCGCPSK 65

>BCL2_BOVIN (O02718) Apoptosis regulator Bcl-2|
          Length = 229

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
 Frame = +1

Query: 223 ADQTGALAPSAPPC----SCHPGRNPHARRTCRPPAQAQA 330
           A   GA  P A P     S  PGR P   RT  PP  A A
Sbjct: 32  AGDAGAAPPGAAPAPGILSSQPGRTPAPSRTSPPPPPAAA 71

>UNG_PRVKA (P52507) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 316

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/48 (35%), Positives = 18/48 (37%)
 Frame = +1

Query: 247 PSAPPCSCHPGRNPHARRTCRPPAQAQAQALESTAAVGCGRGCSCPAR 390
           PS  PC   PG            A   A A  + A  G G G S PAR
Sbjct: 6   PSKRPCGLPPGVRLVVPAAAAASASNAATAAAAAAPAGAGAGASKPAR 53

>ZIM10_MOUSE (Q6P1E1) Retinoic acid-induced protein 17 (PIAS-like protein Zimp10)|
          Length = 1072

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +1

Query: 220  PADQTGALAPSAPPCS---CHPGRNPHARRTCRPPAQAQAQA 336
            P   +GA  PS PP       PG +PH+  T  P +  + QA
Sbjct: 982  PLHHSGAPPPSQPPRQPPQAAPGNHPHSDLTFNPSSALEGQA 1023

>GMIP_MOUSE (Q6PGG2) GEM-interacting protein (GMIP)|
          Length = 971

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 244 APSAPPCSCHPGRNPHARRTCRPPAQAQAQALESTA 351
           +P  PP    PG N    R  R   +AQA+A E+ A
Sbjct: 238 SPEDPPSQASPGSNKQQERRRRSREEAQAKAHEAEA 273

>LAMC3_HUMAN (Q9Y6N6) Laminin gamma-3 chain precursor (Laminin 12 gamma 3|
           subunit)
          Length = 1587

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
 Frame = +1

Query: 238 ALAP----SAPPCSCHPGRNPHARRTCRPPAQAQAQALESTAAVGCGR 369
           ALAP       PCSCHP  +   +  C  P   Q   L    A  C R
Sbjct: 854 ALAPRPADKCMPCSCHPQGSVSEQMPC-DPVTGQCSCLPHVTARDCSR 900

>GMIP_HUMAN (Q9P107) GEM-interacting protein (GMIP)|
          Length = 970

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 223 ADQTGALAPSAPPCSCHPGRNPHARRTCRPPAQAQAQALES 345
           A   G+   SAP  S  P +    RR  R  AQA+AQ  E+
Sbjct: 229 ARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEA 269

>KIF1C_HUMAN (O43896) Kinesin-like protein KIF1C|
          Length = 1103

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 203  PAAPGDRPTRPERWHHRRRH 262
            PA P  RP  P R HH RR+
Sbjct: 1013 PATPARRPPSPRRSHHPRRN 1032

>ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2|
          Length = 769

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 288 GVTPGVAATWRRRWCQRSGLVGRSPGAAG 202
           G  P  +A W   + Q++   G++PGAAG
Sbjct: 728 GPQPDYSAAWAEYYRQQAAYYGQTPGAAG 756

>MYPR_CHICK (P23289) Myelin proteolipid protein (PLP) (Lipophilin)|
          Length = 276

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 384 RATTTPTAAHSRSTLQRLCLCLCRWPAGTTR-VGVTPGVAATW 259
           R    P  AHS   LQR+C CL +W     + VG+T  +   W
Sbjct: 123 RGARGPQRAHS---LQRVCQCLGKWLGHPDKFVGITYVLTIVW 162

>GAG_HV2D2 (P15832) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 241 LAPSAPPCSCHPGRNPHARRTCRPPAQAQAQALESTAAVG 360
           + PSAPP +   G  P       PPA    + L+S   +G
Sbjct: 452 VTPSAPPMNPAEGMTPRGATPSAPPADPAVEMLKSYMQMG 491

>PDE8A_HUMAN (O60658) High-affinity cAMP-specific and IBMX-insensitive|
           3',5'-cyclic phosphodiesterase 8A (EC 3.1.4.17)
          Length = 829

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 238 ALAPSAPPCSCHPGRNPHARRTCRPPAQAQAQALESTAAVGCGR 369
           A +P+APP S    R P  ++T   P    A  LES    G G+
Sbjct: 18  APSPAAPPLSSGGPRLPQGQKTAALPRTRGAGLLESELRDGSGK 61

>RUVA_RHOS4 (Q3J0F6) Holliday junction ATP-dependent DNA helicase ruvA (EC|
           3.6.1.-)
          Length = 224

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +1

Query: 232 TGALAPSAPPCSCHPGRNPHARRTCRPPAQAQ----AQALESTAAVG 360
           T ALAPS PP    PG +  +RR  R P   +    A AL + A +G
Sbjct: 142 TAALAPSEPP-EPEPGTSSGSRRKTRAPEPPRPSHTADALSALANLG 187

>EC2_ARATH (Q42377) EC protein homolog 2|
          Length = 85

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = +1

Query: 259 PCSCHPGRNPHARRTCRPPAQAQAQALESTAAVGCGRGCSC 381
           PC  H G NP     C  P   + Q   S     CG GC+C
Sbjct: 48  PCGEHCGCNP-----CNCP---KTQTQTSAKGCTCGEGCTC 80

>EC1_ARATH (P93746) EC protein homolog 1|
          Length = 84

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = +1

Query: 259 PCSCHPGRNPHARRTCRPPAQAQAQALESTAAVGCGRGCSC 381
           PC  H G NP     C  P   + Q   S     CG GC+C
Sbjct: 47  PCGEHCGCNP-----CNCP---KTQTQTSAKGCTCGEGCTC 79

>CREL1_RAT (Q4V7F2) Cysteine-rich with EGF-like domain protein 1 precursor|
          Length = 420

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = +1

Query: 241 LAPSAPPCSCHPGRNPHARRTCRPPAQAQAQALESTAAVGCGRG 372
           L PS PP S  P   PH   TCR    +  + LE T     G G
Sbjct: 29  LQPSPPPHSA-PRAEPHPCHTCRALVDSFNKGLERTIRDNFGGG 71

>CHOD_BREST (P22637) Cholesterol oxidase precursor (EC 1.1.3.6) (CHOD)|
          Length = 552

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 13/96 (13%)
 Frame = -2

Query: 294 RVGVTPGVAATWRRRWCQRSGLVGRSPGAAGXXXXXXXXXXXXXRYGTEGSAAVRGLGDG 115
           R   T GVA+  RRR+   +GL   +   +                G    A V G G G
Sbjct: 8   RADATRGVASVSRRRFLAGAGLTAGAIALSSMSTSASAAPSRTLADGDRVPALVIGSGYG 67

Query: 114 G-------------SNLLEM*ITWIHPCGLVSRLFC 46
           G             + ++EM  +W  P G   ++FC
Sbjct: 68  GAVAALRLTQAGIPTQIVEMGRSWDTP-GSDGKIFC 102

>VEGA_MYXXA (P07935) Vegetative protein|
          Length = 178

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 14/67 (20%)
 Frame = +1

Query: 235 GALAPSAPPCSCH-PGRNPHAR-------------RTCRPPAQAQAQALESTAAVGCGRG 372
           GA  P+A       PGR P AR             R  R PA A A    + A +GCG+ 
Sbjct: 58  GAQIPAAAKAGRRGPGRPPAARSAVTAAPAAVGGKRRGRKPAAAGADGSRACAIIGCGK- 116

Query: 373 CSCPART 393
              P+RT
Sbjct: 117 ---PSRT 120

>HXA4_CHICK (P17277) Homeobox protein Hox-A4 (Chox-1.4)|
          Length = 309

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
 Frame = +1

Query: 235 GALAPSAPPCSCHPGRNPHARRTCRP--PAQAQAQALESTAAVGCGRGCSC 381
           GA  P  PP   HPG         +P  P  A  +  E+  A G G G  C
Sbjct: 127 GASPPPPPPAKGHPG-------PAQPLLPGHALQRRCEAAPAAGAGTGPGC 170

>ZDHC1_HUMAN (Q8WTX9) Probable palmitoyltransferase ZDHHC1 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 1) (DHHC-1) (Zinc
           finger protein 377) (DHHC-domain-containing
           cysteine-rich protein 1)
          Length = 485

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -2

Query: 387 RRATTTPTAAHSRSTLQR---LCLCLCRWPAGTTRVGVTPGVAATWRRR 250
           RR    P AA +R  + R   LC  L   PA TTR   +P     WRRR
Sbjct: 409 RRGLGPPAAAPARRRIPRTPALCTPLAL-PAPTTRRRQSPWTRFQWRRR 456

>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +2

Query: 212  PGDRPTRPERWHHRRRHVAATPGVTPTRVVP 304
            P DR  RP   HH   H    PG  P RV P
Sbjct: 2211 PKDRKHRPHHHHHHHHH----PGRGPGRVSP 2237

>NOTC3_HUMAN (Q9UM47) Neurogenic locus notch homolog protein 3 precursor (Notch 3)|
            [Contains: Notch 3 extracellular truncation; Notch 3
            intracellular domain]
          Length = 2321

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +1

Query: 220  PADQTGALAPSAPPCSCHPGRNPHARRTC--RPPAQAQAQALESTAAVGCGRGCSC 381
            P  QT    P  P C+C PG +  + R+    PP  + A    S AA  C  G SC
Sbjct: 1303 PCQQT----PRGPRCACPPGLSGPSCRSFPGSPPGASNA----SCAAAPCLHGGSC 1350

>BCAR3_MACFA (Q4R8R1) Breast cancer anti-estrogen resistance protein 3|
          Length = 825

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
 Frame = +1

Query: 241 LAPSAPPCSCHPGRNPHARRTCRPPAQAQAQA----LESTAAVGCGRGCSCP 384
           L P  PP  C   + P  +    P A   ++A    L    A GCGRG   P
Sbjct: 399 LCPKPPPKPC---KVPFLKAPSSPSAWLNSEANYCELNPAFATGCGRGAKLP 447


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,744,332
Number of Sequences: 219361
Number of extensions: 983636
Number of successful extensions: 3444
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3441
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)