ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast23h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CT010437.15| Mouse DNA sequence from clone RP23-333O22 on ch... 44 0.12
2gb|AC069078.5| Homo sapiens chromosome 10 clone RP11-492B17, com... 42 0.48
3gb|AC135891.3| Homo sapiens 12 BAC RP11-764E9 (Roswell Park Canc... 42 0.48
4gb|AC122026.3| Mus musculus BAC clone RP24-390D21 from chromosom... 40 1.9
5gb|AC097713.3| Homo sapiens BAC clone RP11-251I17 from 2, comple... 40 1.9
6gb|AC117789.17| Mus musculus chromosome 1, clone RP24-548D18, co... 40 1.9
7gb|AC145377.2| Pan troglodytes BAC clone RP43-11P19 from 7, comp... 38 7.5
8gb|AC133602.3| Mus musculus BAC clone RP24-255I9 from chromosome... 38 7.5
9emb|CR847858.15| Zebrafish DNA sequence from clone DKEY-78H3 in ... 38 7.5
10gb|AC151734.3| Mus musculus BAC clone RP23-22O15 from chromosome... 38 7.5
11gb|AC092438.5| Homo sapiens BAC clone RP11-367M19 from 4, comple... 38 7.5
12gb|AC011236.8| Homo sapiens BAC clone RP11-312D1 from 2, complet... 38 7.5
13ref|XM_215840.3| PREDICTED: Rattus norvegicus carboxypeptidase X... 38 7.5
14emb|BX248090.11| Zebrafish DNA sequence from clone DKEY-156K12 i... 38 7.5
15emb|BX957228.13| Zebrafish DNA sequence from clone CH211-230K8 i... 38 7.5
16gb|AC170421.7| Rhesus Macaque 14 BAC CH250-340G19 (Children's Ho... 38 7.5

>emb|CT010437.15| Mouse DNA sequence from clone RP23-333O22 on chromosome 17, complete
              sequence
          Length = 172696

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 54     tgtctggttttcctgaagatac 75
              ||||||||||||||||||||||
Sbjct: 127608 tgtctggttttcctgaagatac 127629



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>gb|AC069078.5| Homo sapiens chromosome 10 clone RP11-492B17, complete sequence
          Length = 187669

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 128   attgtgctgcaaatacaacat 148
             |||||||||||||||||||||
Sbjct: 35124 attgtgctgcaaatacaacat 35104



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>gb|AC135891.3| Homo sapiens 12 BAC RP11-764E9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 92128

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 128   attgtgctgcaaatacaacat 148
             |||||||||||||||||||||
Sbjct: 47932 attgtgctgcaaatacaacat 47952



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>gb|AC122026.3| Mus musculus BAC clone RP24-390D21 from chromosome 1, complete sequence
          Length = 205642

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 81    gaatgaaccaggcatgactcagca 104
             ||||||||||| ||||||||||||
Sbjct: 13040 gaatgaaccagtcatgactcagca 13017



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>gb|AC097713.3| Homo sapiens BAC clone RP11-251I17 from 2, complete sequence
          Length = 173790

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 63     ttcctgaagatactgggagaatga 86
              ||||||||||| ||||||||||||
Sbjct: 111151 ttcctgaagattctgggagaatga 111128



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>gb|AC117789.17| Mus musculus chromosome 1, clone RP24-548D18, complete sequence
          Length = 180733

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 81     gaatgaaccaggcatgactcagca 104
              ||||||||||| ||||||||||||
Sbjct: 102382 gaatgaaccagtcatgactcagca 102359



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>gb|AC145377.2| Pan troglodytes BAC clone RP43-11P19 from 7, complete sequence
          Length = 194463

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 126    aaattgtgctgcaaataca 144
              |||||||||||||||||||
Sbjct: 142918 aaattgtgctgcaaataca 142936



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>gb|AC133602.3| Mus musculus BAC clone RP24-255I9 from chromosome 15, complete sequence
          Length = 155411

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 83     atgaaccaggcatgactca 101
              |||||||||||||||||||
Sbjct: 143925 atgaaccaggcatgactca 143907



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>emb|CR847858.15| Zebrafish DNA sequence from clone DKEY-78H3 in linkage group 5,
             complete sequence
          Length = 255113

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 129   ttgtgctgcaaatacaacatcta 151
             ||||||||| |||||||||||||
Sbjct: 96359 ttgtgctgcgaatacaacatcta 96381



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>gb|AC151734.3| Mus musculus BAC clone RP23-22O15 from chromosome 15, complete sequence
          Length = 229862

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 83     atgaaccaggcatgactca 101
              |||||||||||||||||||
Sbjct: 102970 atgaaccaggcatgactca 102952



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>gb|AC092438.5| Homo sapiens BAC clone RP11-367M19 from 4, complete sequence
          Length = 67683

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 69    aagatactgggagaatgaa 87
             |||||||||||||||||||
Sbjct: 39785 aagatactgggagaatgaa 39803



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>gb|AC011236.8| Homo sapiens BAC clone RP11-312D1 from 2, complete sequence
          Length = 188639

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 4      agcgtgaccaatactttgg 22
              |||||||||||||||||||
Sbjct: 101989 agcgtgaccaatactttgg 102007



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>ref|XM_215840.3| PREDICTED: Rattus norvegicus carboxypeptidase X 1 (M14 family)
            (predicted) (Cpxm1_predicted), mRNA
          Length = 2493

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 97   actcagcacgaatggaatg 115
            |||||||||||||||||||
Sbjct: 1773 actcagcacgaatggaatg 1755



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>emb|BX248090.11| Zebrafish DNA sequence from clone DKEY-156K12 in linkage group 20,
             complete sequence
          Length = 212314

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 129   ttgtgctgcaaatacaacatcta 151
             |||||||||||| ||||||||||
Sbjct: 23478 ttgtgctgcaaagacaacatcta 23500



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>emb|BX957228.13| Zebrafish DNA sequence from clone CH211-230K8 in linkage group 24,
              complete sequence
          Length = 146378

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 132    tgctgcaaatacaacatctacaa 154
              |||||||||||||||| ||||||
Sbjct: 108755 tgctgcaaatacaacaactacaa 108777



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>gb|AC170421.7| Rhesus Macaque 14 BAC CH250-340G19 (Children's Hospital Oakland Research
              Institute Rhesus macaque Adult Male BAC Library) complete
              sequence
          Length = 169902

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 138    aaatacaacatctacaatt 156
              |||||||||||||||||||
Sbjct: 158630 aaatacaacatctacaatt 158648


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,268,732
Number of Sequences: 3902068
Number of extensions: 1268732
Number of successful extensions: 86363
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86341
Number of HSP's gapped (non-prelim): 22
length of query: 157
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 135
effective length of database: 17,147,199,772
effective search space: 2314871969220
effective search space used: 2314871969220
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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