| Clone Name | rbast23h06 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT010437.15| Mouse DNA sequence from clone RP23-333O22 on chromosome 17, complete sequence Length = 172696 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Plus Query: 54 tgtctggttttcctgaagatac 75 |||||||||||||||||||||| Sbjct: 127608 tgtctggttttcctgaagatac 127629
>gb|AC069078.5| Homo sapiens chromosome 10 clone RP11-492B17, complete sequence Length = 187669 Score = 42.1 bits (21), Expect = 0.48 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 attgtgctgcaaatacaacat 148 ||||||||||||||||||||| Sbjct: 35124 attgtgctgcaaatacaacat 35104
>gb|AC135891.3| Homo sapiens 12 BAC RP11-764E9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 92128 Score = 42.1 bits (21), Expect = 0.48 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 attgtgctgcaaatacaacat 148 ||||||||||||||||||||| Sbjct: 47932 attgtgctgcaaatacaacat 47952
>gb|AC122026.3| Mus musculus BAC clone RP24-390D21 from chromosome 1, complete sequence Length = 205642 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 81 gaatgaaccaggcatgactcagca 104 ||||||||||| |||||||||||| Sbjct: 13040 gaatgaaccagtcatgactcagca 13017
>gb|AC097713.3| Homo sapiens BAC clone RP11-251I17 from 2, complete sequence Length = 173790 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 ttcctgaagatactgggagaatga 86 ||||||||||| |||||||||||| Sbjct: 111151 ttcctgaagattctgggagaatga 111128
>gb|AC117789.17| Mus musculus chromosome 1, clone RP24-548D18, complete sequence Length = 180733 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 81 gaatgaaccaggcatgactcagca 104 ||||||||||| |||||||||||| Sbjct: 102382 gaatgaaccagtcatgactcagca 102359
>gb|AC145377.2| Pan troglodytes BAC clone RP43-11P19 from 7, complete sequence Length = 194463 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 126 aaattgtgctgcaaataca 144 ||||||||||||||||||| Sbjct: 142918 aaattgtgctgcaaataca 142936
>gb|AC133602.3| Mus musculus BAC clone RP24-255I9 from chromosome 15, complete sequence Length = 155411 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 83 atgaaccaggcatgactca 101 ||||||||||||||||||| Sbjct: 143925 atgaaccaggcatgactca 143907
>emb|CR847858.15| Zebrafish DNA sequence from clone DKEY-78H3 in linkage group 5, complete sequence Length = 255113 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 129 ttgtgctgcaaatacaacatcta 151 ||||||||| ||||||||||||| Sbjct: 96359 ttgtgctgcgaatacaacatcta 96381
>gb|AC151734.3| Mus musculus BAC clone RP23-22O15 from chromosome 15, complete sequence Length = 229862 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 83 atgaaccaggcatgactca 101 ||||||||||||||||||| Sbjct: 102970 atgaaccaggcatgactca 102952
>gb|AC092438.5| Homo sapiens BAC clone RP11-367M19 from 4, complete sequence Length = 67683 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 aagatactgggagaatgaa 87 ||||||||||||||||||| Sbjct: 39785 aagatactgggagaatgaa 39803
>gb|AC011236.8| Homo sapiens BAC clone RP11-312D1 from 2, complete sequence Length = 188639 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 agcgtgaccaatactttgg 22 ||||||||||||||||||| Sbjct: 101989 agcgtgaccaatactttgg 102007
>ref|XM_215840.3| PREDICTED: Rattus norvegicus carboxypeptidase X 1 (M14 family) (predicted) (Cpxm1_predicted), mRNA Length = 2493 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 97 actcagcacgaatggaatg 115 ||||||||||||||||||| Sbjct: 1773 actcagcacgaatggaatg 1755
>emb|BX248090.11| Zebrafish DNA sequence from clone DKEY-156K12 in linkage group 20, complete sequence Length = 212314 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 129 ttgtgctgcaaatacaacatcta 151 |||||||||||| |||||||||| Sbjct: 23478 ttgtgctgcaaagacaacatcta 23500
>emb|BX957228.13| Zebrafish DNA sequence from clone CH211-230K8 in linkage group 24, complete sequence Length = 146378 Score = 38.2 bits (19), Expect = 7.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 132 tgctgcaaatacaacatctacaa 154 |||||||||||||||| |||||| Sbjct: 108755 tgctgcaaatacaacaactacaa 108777
>gb|AC170421.7| Rhesus Macaque 14 BAC CH250-340G19 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 169902 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 138 aaatacaacatctacaatt 156 ||||||||||||||||||| Sbjct: 158630 aaatacaacatctacaatt 158648 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,268,732 Number of Sequences: 3902068 Number of extensions: 1268732 Number of successful extensions: 86363 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86341 Number of HSP's gapped (non-prelim): 22 length of query: 157 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 135 effective length of database: 17,147,199,772 effective search space: 2314871969220 effective search space used: 2314871969220 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)