ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast23g11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL583859.9| Human DNA sequence from clone RP11-271F18 on chr... 48 0.021
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
3dbj|AK059455.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.021
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.021
5emb|AL713943.3|CNS07YPC Oryza sativa chromosome 12, . BAC OSJNBa... 48 0.021
6emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa... 48 0.021
7dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 46 0.083
8gb|AE012184.1| Xanthomonas campestris pv. campestris str. ATCC 3... 44 0.33
9gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 44 0.33
10ref|XM_426245.1| PREDICTED: Gallus gallus similar to RIKEN cDNA ... 42 1.3
11gb|AC007393.3| Homo sapiens BAC clone RP11-451J3 from 7, complet... 42 1.3
12gb|AC107741.15| Mus musculus chromosome 3, clone RP23-335P23, co... 42 1.3
13gb|AC133779.21| Medicago truncatula clone mth2-27n4, complete se... 42 1.3
14gb|AC009708.11| Homo sapiens chromosome 8, clone RP11-318G5, com... 42 1.3
15dbj|AP000782.3| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 1.3
16dbj|AP001328.3| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 1.3
17ref|XM_511474.1| PREDICTED: Pan troglodytes DNA topoisomerase II... 40 5.1
18gb|CP000110.1| Synechococcus sp. CC9605, complete genome 40 5.1
19gb|AF285159.1| Homo sapiens topoisomerase II alpha-4 (TOP2A) mRN... 40 5.1
20gb|AF285158.1| Homo sapiens topoisomerase II alpha-3 (TOP2A) mRN... 40 5.1
21gb|AF285157.1| Homo sapiens topoisomerase II alpha-2 (TOP2A) mRN... 40 5.1
22gb|AC090426.1| Homo sapiens chromosome 17 clone 205m17 map 17q21... 40 5.1
23gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 5.1
24ref|NM_001067.2| Homo sapiens topoisomerase (DNA) II alpha 170kD... 40 5.1
25gb|AY288927.2| Enterobacteria phage SP6, complete genome 40 5.1
26gb|AY370673.1| Enterobacteria phage SP6, complete genome 40 5.1
27ref|XM_857989.1| PREDICTED: Canis familiaris similar to DNA topo... 40 5.1
28ref|XM_537646.2| PREDICTED: Canis familiaris similar to DNA topo... 40 5.1
29gb|AC121853.3| Mus musculus BAC clone RP24-96P15 from chromosome... 40 5.1
30ref|XM_797648.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 5.1
31gb|AC121869.2| Mus musculus BAC clone RP24-121C10 from 17, compl... 40 5.1
32gb|AC156574.2| Mus musculus BAC clone RP23-54L14 from chromosome... 40 5.1
33emb|AL645822.24| Zebrafish DNA sequence from clone RP71-1C22 in ... 40 5.1
34emb|BX649215.1| Human DNA sequence from clone RP11-575L16 on chr... 40 5.1
35gb|AC080112.15| Homo sapiens chromosome 17, clone CTD-2267D19, c... 40 5.1
36emb|AL356056.22| Human DNA sequence from clone RP11-38L15 on chr... 40 5.1
37ref|XM_785133.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.1
38gb|AC018629.12| Homo sapiens chromosome 17, clone RP11-58O9, com... 40 5.1
39emb|CR954985.1| Human DNA sequence from clone XX-HCC1954_35K08, ... 40 5.1
40emb|Y16595.1|CLTOPO4 Cricetulus longicaudatus mRNA for DNA topoi... 40 5.1
41emb|Y16594.1|CLTOPO3 Cricetulus longicaudatus mRNA for DNA topoi... 40 5.1
42gb|AC144658.33| Medicago truncatula clone mth2-31g20, complete s... 40 5.1
43gb|AE011724.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.1
44emb|CR394533.7| Human DNA sequence from clone XX-HCC1954_10I10, ... 40 5.1
45gb|AC099513.3| Homo sapiens chromosome 5 clone RP11-395C3, compl... 40 5.1
46gb|AC100800.2| Homo sapiens chromosome 8, clone RP11-161I2, comp... 40 5.1
47gb|AC011339.5| Homo sapiens chromosome 5 clone CTC-260J12, compl... 40 5.1
48emb|BX255947.6| Zebrafish DNA sequence from clone CH211-260D9 in... 40 5.1
49gb|AC090077.1|AC090077 Trypanosoma cruzi strain Brener clone 12A... 40 5.1
50gb|AC107070.4| Homo sapiens BAC clone RP11-293H4 from 2, complet... 40 5.1
51gb|AC009283.6| Homo sapiens chromosome 17, clone RP11-390P24, co... 40 5.1
52gb|AC010291.5|AC010291 Homo sapiens chromosome 5 clone CTB-130E2... 40 5.1
53gb|BC013429.1| Homo sapiens topoisomerase (DNA) II alpha 170kDa,... 40 5.1
54emb|BX248515.4| Zebrafish DNA sequence from clone DKEY-177P2 in ... 40 5.1
55gb|AY728731.1| Macaca mulatta isolate SIV_RQ3556_17q12b SIV-deri... 40 5.1
56gb|AF071739.1|HSTOP2A02 Homo sapiens topoisomerase II alpha (TOP... 40 5.1
57emb|AJ011744.1|HSA011744 Homo sapiens TOP2 alpha gene, exon 8 to... 40 5.1
58gb|AC134843.4| Mus musculus BAC clone RP24-388C21 from 3, comple... 40 5.1
59emb|CT025564.10| Mouse DNA sequence from clone RP24-123J6 on chr... 40 5.1
60emb|AL691438.16| Mouse DNA sequence from clone RP23-243L4 on chr... 40 5.1
61gb|J04088.1|HUMTOPII Human DNA topoisomerase II (top2) mRNA, com... 40 5.1
62gb|L04607.1|CRUTOPISII Cricetulus griseus DNA topoisomerase II m... 40 5.1 
>emb|AL583859.9| Human DNA sequence from clone RP11-271F18 on chromosome 10 Contains two
              novel genes, complete sequence
          Length = 167611

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 267    aatctttccattcttttccttcaa 290
              ||||||||||||||||||||||||
Sbjct: 138251 aatctttccattcttttccttcaa 138274
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 87/108 (80%)
 Strand = Plus / Minus

                                                                            
Query: 278      tcttttccttcaatgccatcctcaactctccaatctcactgtccattttaccattgcagt 337
                |||||||| ||| ||||| | ||| ||  |||||||||| |||| | | | |||||||||
Sbjct: 20921983 tcttttccatcagtgccaccttcagcttcccaatctcaccgtccttctcaacattgcagt 20921924

                                                                
Query: 338      tctccagtgccttgattttcgacatcagcttccctgcttcagccttct 385
                |||| |  ||||  ||||||||| ||||||| |  |||||||||||||
Sbjct: 20921923 tctcaatagcctcaattttcgacttcagcttgcacgcttcagccttct 20921876
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>dbj|AK059455.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-C02, full
           insert sequence
          Length = 964

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 87/108 (80%)
 Strand = Plus / Minus

                                                                       
Query: 278 tcttttccttcaatgccatcctcaactctccaatctcactgtccattttaccattgcagt 337
           |||||||| ||| ||||| | ||| ||  |||||||||| |||| | | | |||||||||
Sbjct: 650 tcttttccatcagtgccaccttcagcttcccaatctcaccgtccttctcaacattgcagt 591

                                                           
Query: 338 tctccagtgccttgattttcgacatcagcttccctgcttcagccttct 385
           |||| |  ||||  ||||||||| ||||||| |  |||||||||||||
Sbjct: 590 tctcaatagcctcaattttcgacttcagcttgcacgcttcagccttct 543
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 87/108 (80%)
 Strand = Plus / Minus

                                                                            
Query: 278      tcttttccttcaatgccatcctcaactctccaatctcactgtccattttaccattgcagt 337
                |||||||| ||| ||||| | ||| ||  |||||||||| |||| | | | |||||||||
Sbjct: 20848197 tcttttccatcagtgccaccttcagcttcccaatctcaccgtccttctcaacattgcagt 20848138

                                                                
Query: 338      tctccagtgccttgattttcgacatcagcttccctgcttcagccttct 385
                |||| |  ||||  ||||||||| ||||||| |  |||||||||||||
Sbjct: 20848137 tctcaatagcctcaattttcgacttcagcttgcacgcttcagccttct 20848090
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>emb|AL713943.3|CNS07YPC Oryza sativa chromosome 12, . BAC OSJNBa0030G16 of library OSJNBa
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 182172

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 87/108 (80%)
 Strand = Plus / Minus

                                                                        
Query: 278  tcttttccttcaatgccatcctcaactctccaatctcactgtccattttaccattgcagt 337
            |||||||| ||| ||||| | ||| ||  |||||||||| |||| | | | |||||||||
Sbjct: 7473 tcttttccatcagtgccaccttcagcttcccaatctcaccgtccttctcaacattgcagt 7414

                                                            
Query: 338  tctccagtgccttgattttcgacatcagcttccctgcttcagccttct 385
            |||| |  ||||  ||||||||| ||||||| |  |||||||||||||
Sbjct: 7413 tctcaatagcctcaattttcgacttcagcttgcacgcttcagccttct 7366
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>emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa0035E02 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 107819

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 87/108 (80%)
 Strand = Plus / Plus

                                                                         
Query: 278   tcttttccttcaatgccatcctcaactctccaatctcactgtccattttaccattgcagt 337
             |||||||| ||| ||||| | ||| ||  |||||||||| |||| | | | |||||||||
Sbjct: 37012 tcttttccatcagtgccaccttcagcttcccaatctcaccgtccttctcaacattgcagt 37071

                                                             
Query: 338   tctccagtgccttgattttcgacatcagcttccctgcttcagccttct 385
             |||| |  ||||  ||||||||| ||||||| |  |||||||||||||
Sbjct: 37072 tctcaatagcctcaattttcgacttcagcttgcacgcttcagccttct 37119
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 151     gcggccaccacggtggtggtggc 173
               |||||||||||||||||||||||
Sbjct: 5343588 gcggccaccacggtggtggtggc 5343610
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>gb|AE012184.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 92 of
             460 of the complete genome
          Length = 10695

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 156   caccacggtggtggtggcggca 177
             ||||||||||||||||||||||
Sbjct: 10124 caccacggtggtggtggcggca 10145
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 156     caccacggtggtggtggcggca 177
               ||||||||||||||||||||||
Sbjct: 4027285 caccacggtggtggtggcggca 4027264
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>ref|XM_426245.1| PREDICTED: Gallus gallus similar to RIKEN cDNA B930011H20 gene
            (LOC428687), mRNA
          Length = 4911

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 232  agctgcagcacctcagcctcc 252
            |||||||||||||||||||||
Sbjct: 1177 agctgcagcacctcagcctcc 1197
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>gb|AC007393.3| Homo sapiens BAC clone RP11-451J3 from 7, complete sequence
          Length = 71082

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 269   tctttccattcttttccttca 289
             |||||||||||||||||||||
Sbjct: 21660 tctttccattcttttccttca 21680
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>gb|AC107741.15| Mus musculus chromosome 3, clone RP23-335P23, complete sequence
          Length = 212995

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 157    accacggtggtggtggcggca 177
              |||||||||||||||||||||
Sbjct: 163006 accacggtggtggtggcggca 162986
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>gb|AC133779.21| Medicago truncatula clone mth2-27n4, complete sequence
          Length = 100702

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 319  tccattttaccattgcagttctcca 343
            ||||||| |||||||||||||||||
Sbjct: 7336 tccatttgaccattgcagttctcca 7312
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>gb|AC009708.11| Homo sapiens chromosome 8, clone RP11-318G5, complete sequence
          Length = 220215

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 274    ccattcttttccttcaatgccatcc 298
              |||||| ||||||||||||||||||
Sbjct: 182111 ccattcatttccttcaatgccatcc 182087
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>dbj|AP000782.3| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1199D2
          Length = 154037

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 274   ccattcttttccttcaatgccatcc 298
             |||||| ||||||||||||||||||
Sbjct: 60494 ccattcatttccttcaatgccatcc 60470
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>dbj|AP001328.3| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1073A2
          Length = 147826

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 274   ccattcttttccttcaatgccatcc 298
             |||||| ||||||||||||||||||
Sbjct: 94328 ccattcatttccttcaatgccatcc 94304
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>ref|XM_511474.1| PREDICTED: Pan troglodytes DNA topoisomerase II, alpha isozyme
           (LOC454651), mRNA
          Length = 3081

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 195 accacccttgttcttcttct 214
           ||||||||||||||||||||
Sbjct: 912 accacccttgttcttcttct 893
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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 232    agctgcagcacctcagcctc 251
              ||||||||||||||||||||
Sbjct: 237807 agctgcagcacctcagcctc 237788
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>gb|AF285159.1| Homo sapiens topoisomerase II alpha-4 (TOP2A) mRNA, partial cds
          Length = 1743

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  accacccttgttcttcttct 214
            ||||||||||||||||||||
Sbjct: 1044 accacccttgttcttcttct 1025
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>gb|AF285158.1| Homo sapiens topoisomerase II alpha-3 (TOP2A) mRNA, partial cds
          Length = 1608

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  accacccttgttcttcttct 214
            ||||||||||||||||||||
Sbjct: 1152 accacccttgttcttcttct 1133
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>gb|AF285157.1| Homo sapiens topoisomerase II alpha-2 (TOP2A) mRNA, partial cds
          Length = 1578

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  accacccttgttcttcttct 214
            ||||||||||||||||||||
Sbjct: 1044 accacccttgttcttcttct 1025
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>gb|AC090426.1| Homo sapiens chromosome 17 clone 205m17 map 17q21.1, complete sequence
          Length = 138999

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   accacccttgttcttcttct 214
             ||||||||||||||||||||
Sbjct: 28392 accacccttgttcttcttct 28373
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 152     cggccaccacggtggtggtg 171
               ||||||||||||||||||||
Sbjct: 1702195 cggccaccacggtggtggtg 1702176
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>ref|NM_001067.2| Homo sapiens topoisomerase (DNA) II alpha 170kDa (TOP2A), mRNA
          Length = 5698

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  accacccttgttcttcttct 214
            ||||||||||||||||||||
Sbjct: 1170 accacccttgttcttcttct 1151
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>gb|AY288927.2| Enterobacteria phage SP6, complete genome
          Length = 43769

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   ctccttggtaaggtcttcaa 268
             ||||||||||||||||||||
Sbjct: 36481 ctccttggtaaggtcttcaa 36462
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>gb|AY370673.1| Enterobacteria phage SP6, complete genome
          Length = 43769

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   ctccttggtaaggtcttcaa 268
             ||||||||||||||||||||
Sbjct: 36481 ctccttggtaaggtcttcaa 36462
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>ref|XM_857989.1| PREDICTED: Canis familiaris similar to DNA topoisomerase II, alpha
            isozyme, transcript variant 3 (LOC480525), mRNA
          Length = 4710

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  accacccttgttcttcttct 214
            ||||||||||||||||||||
Sbjct: 1152 accacccttgttcttcttct 1133
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>ref|XM_537646.2| PREDICTED: Canis familiaris similar to DNA topoisomerase II, alpha
            isozyme, transcript variant 1 (LOC480525), mRNA
          Length = 4707

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  accacccttgttcttcttct 214
            ||||||||||||||||||||
Sbjct: 1152 accacccttgttcttcttct 1133
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>gb|AC121853.3| Mus musculus BAC clone RP24-96P15 from chromosome 17, complete sequence
          Length = 144510

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   tctttccattcttttccttc 288
             ||||||||||||||||||||
Sbjct: 76705 tctttccattcttttccttc 76686
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>ref|XM_797648.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053508077.9) partial mRNA
          Length = 1872

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 161 cggtggtggtggcggcatac 180
           ||||||||||||||||||||
Sbjct: 795 cggtggtggtggcggcatac 776
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>gb|AC121869.2| Mus musculus BAC clone RP24-121C10 from 17, complete sequence
          Length = 182237

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 269    tctttccattcttttccttc 288
              ||||||||||||||||||||
Sbjct: 141096 tctttccattcttttccttc 141115
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>gb|AC156574.2| Mus musculus BAC clone RP23-54L14 from chromosome 14, complete sequence
          Length = 208155

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   ggtcttcaatctttccattc 279
             ||||||||||||||||||||
Sbjct: 79436 ggtcttcaatctttccattc 79455
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>emb|AL645822.24| Zebrafish DNA sequence from clone RP71-1C22 in linkage group 20,
             complete sequence
          Length = 181112

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   accacccttgttcttcttct 214
             ||||||||||||||||||||
Sbjct: 54347 accacccttgttcttcttct 54328
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>emb|BX649215.1| Human DNA sequence from clone RP11-575L16 on chromosome 10 Contains a
             novel pseudogene (FLJ12916) (MGC5560), a Ras homolog
             enriched in brain (RHEB) pseudogene and a CpG island,
             complete sequence
          Length = 77278

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   cacctcagcctccttggtaa 259
             ||||||||||||||||||||
Sbjct: 76817 cacctcagcctccttggtaa 76836
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>gb|AC080112.15| Homo sapiens chromosome 17, clone CTD-2267D19, complete sequence
          Length = 175014

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   accacccttgttcttcttct 214
             ||||||||||||||||||||
Sbjct: 12323 accacccttgttcttcttct 12304
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>emb|AL356056.22| Human DNA sequence from clone RP11-38L15 on chromosome 10 Contains a gene
              for a protein similar to FLJ12916, two novel genes, the
              gene for synaptotagmin (CHR10SYT), a Ras homolog enriched
              in brain 2 (RHEB2) pseudogene, the 5' end of a novel gene
              (LOC142964) and two CpG islands, complete sequence
          Length = 183976

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    cacctcagcctccttggtaa 259
              ||||||||||||||||||||
Sbjct: 134028 cacctcagcctccttggtaa 134047
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>ref|XM_785133.1| PREDICTED: Strongylocentrotus purpuratus similar to Advillin (p92)
           (LOC585300), mRNA
          Length = 1260

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  agcatgcaaacagaggatca 82
           ||||||||||||||||||||
Sbjct: 757 agcatgcaaacagaggatca 776



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  agcatgcaaacagaggatca 82
           ||||||||||||||||||||
Sbjct: 562 agcatgcaaacagaggatca 581
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>gb|AC018629.12| Homo sapiens chromosome 17, clone RP11-58O9, complete sequence
          Length = 166234

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   accacccttgttcttcttct 214
             ||||||||||||||||||||
Sbjct: 66438 accacccttgttcttcttct 66457
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>emb|CR954985.1| Human DNA sequence from clone XX-HCC1954_35K08, complete sequence
          Length = 164576

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   tctttccattcttttccttc 288
             ||||||||||||||||||||
Sbjct: 40439 tctttccattcttttccttc 40458
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>emb|Y16595.1|CLTOPO4 Cricetulus longicaudatus mRNA for DNA topoisomerase II alpha, cell
            line DC-3F/S16
          Length = 5557

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  accacccttgttcttcttct 214
            ||||||||||||||||||||
Sbjct: 1125 accacccttgttcttcttct 1106
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>emb|Y16594.1|CLTOPO3 Cricetulus longicaudatus mRNA for DNA topoisomerase II alpha, cell
            line DC-3F/9-OH-E
          Length = 5561

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  accacccttgttcttcttct 214
            ||||||||||||||||||||
Sbjct: 1129 accacccttgttcttcttct 1110
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>gb|AC144658.33| Medicago truncatula clone mth2-31g20, complete sequence
          Length = 119041

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Plus

                                            
Query: 288   caatgccatcctcaa--ctctccaatctcac 316
             |||||||||||||||  ||||||||||||||
Sbjct: 52483 caatgccatcctcaagcctctccaatctcac 52513
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>gb|AE011724.1| Xanthomonas axonopodis pv. citri str. 306,  section 102 of 469 of the
            complete genome
          Length = 11017

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 157  accacggtggtggtggcggc 176
            ||||||||||||||||||||
Sbjct: 3823 accacggtggtggtggcggc 3842
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>emb|CR394533.7| Human DNA sequence from clone XX-HCC1954_10I10, complete sequence
          Length = 67374

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   tctttccattcttttccttc 288
             ||||||||||||||||||||
Sbjct: 35990 tctttccattcttttccttc 36009
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>gb|AC099513.3| Homo sapiens chromosome 5 clone RP11-395C3, complete sequence
          Length = 156348

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   cacctcagcctccttggtaa 259
             ||||||||||||||||||||
Sbjct: 59690 cacctcagcctccttggtaa 59709
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>gb|AC100800.2| Homo sapiens chromosome 8, clone RP11-161I2, complete sequence
          Length = 196849

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 294   catcctcaactctccaatct 313
             ||||||||||||||||||||
Sbjct: 36486 catcctcaactctccaatct 36505
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>gb|AC011339.5| Homo sapiens chromosome 5 clone CTC-260J12, complete sequence
          Length = 152560

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   gcagcacctcagcctccttg 255
             ||||||||||||||||||||
Sbjct: 29703 gcagcacctcagcctccttg 29684
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>emb|BX255947.6| Zebrafish DNA sequence from clone CH211-260D9 in linkage group 19,
              complete sequence
          Length = 147891

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 195    accacccttgttcttcttct 214
              ||||||||||||||||||||
Sbjct: 122465 accacccttgttcttcttct 122484
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>gb|AC090077.1|AC090077 Trypanosoma cruzi strain Brener clone 12A5, complete sequence
          Length = 13998

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   cggtggtggtggcggcatac 180
             ||||||||||||||||||||
Sbjct: 12448 cggtggtggtggcggcatac 12429
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>gb|AC107070.4| Homo sapiens BAC clone RP11-293H4 from 2, complete sequence
          Length = 107972

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 271   tttccattcttttccttcaatgcc 294
             |||||||||||||| |||||||||
Sbjct: 14052 tttccattcttttcattcaatgcc 14075
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>gb|AC009283.6| Homo sapiens chromosome 17, clone RP11-390P24, complete sequence
          Length = 175320

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 269    tctttccattcttttccttc 288
              ||||||||||||||||||||
Sbjct: 119229 tctttccattcttttccttc 119248
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>gb|AC010291.5|AC010291 Homo sapiens chromosome 5 clone CTB-130E24, complete sequence
          Length = 126169

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   gcagcacctcagcctccttg 255
             ||||||||||||||||||||
Sbjct: 81198 gcagcacctcagcctccttg 81179
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>gb|BC013429.1| Homo sapiens topoisomerase (DNA) II alpha 170kDa, mRNA (cDNA clone
            IMAGE:4101949)
          Length = 3076

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  accacccttgttcttcttct 214
            ||||||||||||||||||||
Sbjct: 1170 accacccttgttcttcttct 1151
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>emb|BX248515.4| Zebrafish DNA sequence from clone DKEY-177P2 in linkage group 20,
              complete sequence
          Length = 212105

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 281    tttccttcaatgccatcctc 300
              ||||||||||||||||||||
Sbjct: 128553 tttccttcaatgccatcctc 128572
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>gb|AY728731.1| Macaca mulatta isolate SIV_RQ3556_17q12b SIV-derived vector
           proviral integration site
          Length = 85

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 269 tctttccattcttttccttc 288
           ||||||||||||||||||||
Sbjct: 76  tctttccattcttttccttc 57
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>gb|AF071739.1|HSTOP2A02 Homo sapiens topoisomerase II alpha (TOP2A) gene, exons 8 through
           10
          Length = 1424

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 195 accacccttgttcttcttct 214
           ||||||||||||||||||||
Sbjct: 686 accacccttgttcttcttct 667
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>emb|AJ011744.1|HSA011744 Homo sapiens TOP2 alpha gene, exon 8 to 10, partial
          Length = 881

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 195 accacccttgttcttcttct 214
           ||||||||||||||||||||
Sbjct: 586 accacccttgttcttcttct 567
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>gb|AC134843.4| Mus musculus BAC clone RP24-388C21 from 3, complete sequence
          Length = 205200

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 125   ccctggtagcatagataagggaga 148
             |||||||||||| |||||||||||
Sbjct: 51556 ccctggtagcatggataagggaga 51533
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>emb|CT025564.10| Mouse DNA sequence from clone RP24-123J6 on chromosome 14, complete
             sequence
          Length = 165380

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   ggtcttcaatctttccattc 279
             ||||||||||||||||||||
Sbjct: 69149 ggtcttcaatctttccattc 69168
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>emb|AL691438.16| Mouse DNA sequence from clone RP23-243L4 on chromosome 4 Contains part of
              the Astn2 gene for astrotactin 2, complete sequence
          Length = 197300

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    tccattcttttccttcaatg 292
              ||||||||||||||||||||
Sbjct: 103010 tccattcttttccttcaatg 103029
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>gb|J04088.1|HUMTOPII Human DNA topoisomerase II (top2) mRNA, complete cds
          Length = 4792

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  accacccttgttcttcttct 214
            ||||||||||||||||||||
Sbjct: 1080 accacccttgttcttcttct 1061
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>gb|L04607.1|CRUTOPISII Cricetulus griseus DNA topoisomerase II mRNA, complete cds
          Length = 5536

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  accacccttgttcttcttct 214
            ||||||||||||||||||||
Sbjct: 1122 accacccttgttcttcttct 1103


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,060,117
Number of Sequences: 3902068
Number of extensions: 5060117
Number of successful extensions: 129260
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 128930
Number of HSP's gapped (non-prelim): 330
length of query: 385
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 363
effective length of database: 17,147,199,772
effective search space: 6224433517236
effective search space used: 6224433517236
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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