ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast23f12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009238.1| Triticum aestivum clone wlk1.pk0001.f8:fis, full ... 202 2e-49
2emb|BX883051.1| Rattus norvegicus chromosome 20, major histocomp... 42 0.48
3emb|AL845157.7| Mouse DNA sequence from clone RP23-343I2 on chro... 42 0.48
4gb|AC114634.14| Mus musculus chromosome 8, clone RP24-116E2, com... 40 1.9
5gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome 40 1.9
6gb|AC148582.14| Gasterosteus aculeatus clone ch213-241e10, compl... 40 1.9
7emb|CR318631.5| Zebrafish DNA sequence from clone DKEY-207D5 in ... 40 1.9
8emb|BX649507.3| Zebrafish DNA sequence from clone CH211-154H20 i... 40 1.9
9emb|BX000347.7| Zebrafish DNA sequence from clone DKEY-66C4 in l... 40 1.9
10gb|AC139159.3| Mus musculus BAC clone RP23-119I13 from 8, comple... 40 1.9
11gb|AC168060.4| Mus musculus BAC clone RP23-305A9 from chromosome... 38 7.5
12gb|AC160526.13| Mus musculus chromosome 8, clone RP24-191C23, co... 38 7.5
13gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome 38 7.5
14gb|DP000008.1| Bos taurus target 1 genomic scaffold 38 7.5
15emb|CR381547.15| Zebrafish DNA sequence from clone CH211-66F1 in... 38 7.5
16gb|AC004130.1| Homo sapiens BAC clone CTA-293F17 from 7, complet... 38 7.5
17ref|XM_728080.1| Plasmodium chabaudi chabaudi hypothetical prote... 38 7.5
18gb|AC103939.8| Mus musculus chromosome 18, clone RP23-300E7, com... 38 7.5
19emb|CR391905.6| Zebrafish DNA sequence from clone DKEY-16P7 in l... 38 7.5
20emb|AL390028.11| Human DNA sequence from clone RP4-784N16 on chr... 38 7.5
21emb|AL390857.7| Human DNA sequence from clone RP11-51N22 on chro... 38 7.5
22gb|AC021032.9| Homo sapiens chromosome 10 clone RP11-180I22, com... 38 7.5
23emb|CR387977.8| Zebrafish DNA sequence from clone CH211-72D20 in... 38 7.5
24gb|AY188897.1| Geobacter chapelleii strain 17Z FusA-like (fusA) ... 38 7.5
25emb|CR391994.10| Zebrafish DNA sequence from clone DKEY-239B22, ... 38 7.5
26gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 gen... 38 7.5
27emb|CR339063.8| Zebrafish DNA sequence from clone CH211-247J10 i... 38 7.5
28gb|AC106898.5| Homo sapiens BAC clone RP11-310K19 from 4, comple... 38 7.5
29gb|AC092540.4| Homo sapiens BAC clone RP11-190E23 from 4, comple... 38 7.5
30dbj|AK143495.1| Mus musculus 8 cells embryo 8 cells cDNA, RIKEN ... 38 7.5
31gb|AC068721.4| Homo sapiens BAC clone RP11-545L5 from 4, complet... 38 7.5
32dbj|AK168694.1| Mus musculus 17 days pregnant adult female amnio... 38 7.5
33ref|XM_690286.1| PREDICTED: Danio rerio similar to telomere-asso... 38 7.5
34gb|AC152397.6| Mus musculus chromosome 18, clone RP23-307D12, co... 38 7.5
35dbj|AK169333.1| Mus musculus cDNA, RIKEN full-length enriched li... 38 7.5
36emb|BX470097.9| Zebrafish DNA sequence from clone DKEYP-114E10 i... 38 7.5
37emb|BX004804.10| Zebrafish DNA sequence from clone CH211-39M5 in... 38 7.5
38dbj|AK048061.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 38 7.5
39dbj|AK033615.1| Mus musculus adult male cecum cDNA, RIKEN full-l... 38 7.5
40gb|AC016991.5|AC016991 Homo sapiens BAC clone RP11-17E15 from Y,... 38 7.5
41emb|BX682234.9| Zebrafish DNA sequence from clone CH211-193E13, ... 38 7.5
42emb|BX294113.7| Zebrafish DNA sequence from clone DKEYP-73G8 in ... 38 7.5
43dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.5
44gb|AC013246.13|AC013246 Homo sapiens 12 BAC RP11-997P16 (Roswell... 38 7.5
45gb|AC009111.8| Homo sapiens chromosome 16 clone RP11-468D1, comp... 38 7.5
46gb|BC089366.1| Mus musculus RIKEN cDNA C130032J12 gene, mRNA (cD... 38 7.5
47dbj|BS000033.1| Pan troglodytes chromosome 22 clone:PTB-062D04, ... 38 7.5
48gb|AF074099.1|AF074099 Salvelinus namaycush clone C6 intergenic ... 38 7.5
49gb|AF074094.1|AF074094 Salvelinus namaycush clone A1 5' external... 38 7.5
50gb|AC146966.3| Bos taurus clone RP42-139G14, complete sequence 38 7.5
51emb|AL974314.21| Zebrafish DNA sequence from clone DKEY-89P3 in ... 38 7.5
52emb|BX950199.14| Zebrafish DNA sequence from clone CH211-215A11 ... 38 7.5
53dbj|AP001669.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 38 7.5
54emb|CR376750.10| Zebrafish DNA sequence from clone DKEY-92I15 in... 38 7.5
55gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 38 7.5
56ref|NM_178684.3| Mus musculus RIKEN cDNA C130032J12 gene (C13003... 38 7.5
57gb|AC140337.3| Mus musculus BAC clone RP23-238H7 from 1, complet... 38 7.5
58emb|AL773540.18| Mouse DNA sequence from clone RP23-177L19 on ch... 38 7.5
59gb|AC156016.2| Mus musculus BAC clone RP24-320A12 from chromosom... 38 7.5
60gb|U10438.3| Caenorhabditis elegans cosmid B0280, complete sequence 38 7.5
61emb|AL731650.26| Mouse DNA sequence from clone RP23-368K3 on chr... 38 7.5
62emb|AL805933.7| Mouse DNA sequence from clone RP23-31P9 on chrom... 38 7.5
63dbj|AP000457.3| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 38 7.5 
>gb|BT009238.1| Triticum aestivum clone wlk1.pk0001.f8:fis, full insert mRNA sequence
          Length = 1160

 Score =  202 bits (102), Expect = 2e-49
 Identities = 124/130 (95%), Gaps = 1/130 (0%)
 Strand = Plus / Minus

                                                                        
Query: 26   aaaataacattaaaagcttaactcagtaactgacatagttcgataattttaaaaccaaga 85
            ||||||||||||||||||||||||||| |  |||||||||||||||||| ||||||||||
Sbjct: 1139 aaaataacattaaaagcttaactcagtcatggacatagttcgataattt-aaaaccaaga 1081

                                                                        
Query: 86   gaagcactgaatagaactagagttactgcccaccagtcaaagtactactagatacgaccc 145
            |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 1080 gaagcactgaatagaactagagctactgcccaacagtcaaagtactactagatacgaccc 1021

                      
Query: 146  atcttacaaa 155
            ||||||||||
Sbjct: 1020 atcttacaaa 1011
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>emb|BX883051.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
            assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
            RT1n haplotype; segment 10/11
          Length = 348946

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 81   caagagaagcactgaatagaa 101
            |||||||||||||||||||||
Sbjct: 4900 caagagaagcactgaatagaa 4880
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>emb|AL845157.7| Mouse DNA sequence from clone RP23-343I2 on chromosome 2, complete
             sequence
          Length = 193797

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 72    ttttaaaaccaagagaagcactgaa 96
             |||| ||||||||||||||||||||
Sbjct: 40380 tttttaaaccaagagaagcactgaa 40404
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>gb|AC114634.14| Mus musculus chromosome 8, clone RP24-116E2, complete sequence
          Length = 198670

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    ctcagtaactgacatagttc 66
             ||||||||||||||||||||
Sbjct: 66247 ctcagtaactgacatagttc 66266
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>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome
          Length = 2225959

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 35      ttaaaagcttaactcagtaactgacatagttc 66
               |||||||  |||||||||| ||||||||||||
Sbjct: 1435677 ttaaaaggataactcagtagctgacatagttc 1435646
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>gb|AC148582.14| Gasterosteus aculeatus clone ch213-241e10, complete sequence
          Length = 209278

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     tggggacaagcaactggtga 21
             ||||||||||||||||||||
Sbjct: 38061 tggggacaagcaactggtga 38080
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>emb|CR318631.5| Zebrafish DNA sequence from clone DKEY-207D5 in linkage group 18,
              complete sequence
          Length = 189711

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     attttaaaaccaagagaagc 90
              ||||||||||||||||||||
Sbjct: 103568 attttaaaaccaagagaagc 103549
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>emb|BX649507.3| Zebrafish DNA sequence from clone CH211-154H20 in linkage group 18,
             complete sequence
          Length = 166185

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    attttaaaaccaagagaagc 90
             ||||||||||||||||||||
Sbjct: 51354 attttaaaaccaagagaagc 51373
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>emb|BX000347.7| Zebrafish DNA sequence from clone DKEY-66C4 in linkage group 18,
             complete sequence
          Length = 155713

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    attttaaaaccaagagaagc 90
             ||||||||||||||||||||
Sbjct: 61433 attttaaaaccaagagaagc 61452
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>gb|AC139159.3| Mus musculus BAC clone RP23-119I13 from 8, complete sequence
          Length = 185950

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 47     ctcagtaactgacatagttc 66
              ||||||||||||||||||||
Sbjct: 159290 ctcagtaactgacatagttc 159309
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>gb|AC168060.4| Mus musculus BAC clone RP23-305A9 from chromosome 8, complete sequence
          Length = 177422

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 69    taattttaaaaccaagaga 87
             |||||||||||||||||||
Sbjct: 37768 taattttaaaaccaagaga 37786
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>gb|AC160526.13| Mus musculus chromosome 8, clone RP24-191C23, complete sequence
          Length = 174746

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 97     tagaactagagttactgcc 115
              |||||||||||||||||||
Sbjct: 157275 tagaactagagttactgcc 157257
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>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome
          Length = 2650701

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 64      ttcgataattttaaaacca 82
               |||||||||||||||||||
Sbjct: 1662206 ttcgataattttaaaacca 1662224
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>gb|DP000008.1| Bos taurus target 1 genomic scaffold
          Length = 2072671

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 69    taattttaaaaccaagaga 87
             |||||||||||||||||||
Sbjct: 23578 taattttaaaaccaagaga 23560
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>emb|CR381547.15| Zebrafish DNA sequence from clone CH211-66F1 in linkage group 16,
              complete sequence
          Length = 193260

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 71     attttaaaaccaagagaag 89
              |||||||||||||||||||
Sbjct: 184508 attttaaaaccaagagaag 184490
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>gb|AC004130.1| Homo sapiens BAC clone CTA-293F17 from 7, complete sequence
          Length = 116215

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 70    aattttaaaaccaagagaa 88
             |||||||||||||||||||
Sbjct: 57525 aattttaaaaccaagagaa 57507
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>ref|XM_728080.1| Plasmodium chabaudi chabaudi hypothetical protein (PC401333.00.0)
           partial mRNA
          Length = 216

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 70  aattttaaaaccaagagaa 88
           |||||||||||||||||||
Sbjct: 155 aattttaaaaccaagagaa 137
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>gb|AC103939.8| Mus musculus chromosome 18, clone RP23-300E7, complete sequence
          Length = 240406

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 103   tagagttactgcccaccag 121
             |||||||||||||||||||
Sbjct: 35490 tagagttactgcccaccag 35508
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>emb|CR391905.6| Zebrafish DNA sequence from clone DKEY-16P7 in linkage group 9,
             complete sequence
          Length = 221511

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 118   ccagtcaaagtactactag 136
             |||||||||||||||||||
Sbjct: 74879 ccagtcaaagtactactag 74861
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>emb|AL390028.11| Human DNA sequence from clone RP4-784N16 on chromosome 20 Contains the
             3' end of the gene for a novel protein (FLJ25067),
             complete sequence
          Length = 64792

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 68    ataattttaaaaccaagag 86
             |||||||||||||||||||
Sbjct: 40094 ataattttaaaaccaagag 40112
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>emb|AL390857.7| Human DNA sequence from clone RP11-51N22 on chromosome 13 Contains a
             heterogeneous nuclear ribonucleoprotein A1 (HNRPA1)
             pseudogene and a novel pseudogene (KIAA1935 FLJ31359),
             complete sequence
          Length = 154273

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 70    aattttaaaaccaagagaa 88
             |||||||||||||||||||
Sbjct: 24518 aattttaaaaccaagagaa 24536
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>gb|AC021032.9| Homo sapiens chromosome 10 clone RP11-180I22, complete sequence
          Length = 160635

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 20     gacccaaaaataacattaaaagc 42
              |||||||||| ||||||||||||
Sbjct: 153209 gacccaaaaagaacattaaaagc 153187
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>emb|CR387977.8| Zebrafish DNA sequence from clone CH211-72D20 in linkage group 24,
              complete sequence
          Length = 167396

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 91     actgaatagaactagagtt 109
              |||||||||||||||||||
Sbjct: 111099 actgaatagaactagagtt 111081
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>gb|AY188897.1| Geobacter chapelleii strain 17Z FusA-like (fusA) gene, partial
           sequence
          Length = 590

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 71  attttaaaaccaagagaag 89
           |||||||||||||||||||
Sbjct: 164 attttaaaaccaagagaag 146
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>emb|CR391994.10| Zebrafish DNA sequence from clone DKEY-239B22, complete sequence
          Length = 157765

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 71     attttaaaaccaagagaagcact 93
              ||||||||||||||| |||||||
Sbjct: 145035 attttaaaaccaagacaagcact 145013
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>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete
              sequence
          Length = 134102

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 39     aagcttaactcagtaactg 57
              |||||||||||||||||||
Sbjct: 103345 aagcttaactcagtaactg 103327
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>emb|CR339063.8| Zebrafish DNA sequence from clone CH211-247J10 in linkage group 20,
              complete sequence
          Length = 176083

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 71     attttaaaaccaagagaagcact 93
              ||||||||||||||| |||||||
Sbjct: 122115 attttaaaaccaagacaagcact 122137
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>gb|AC106898.5| Homo sapiens BAC clone RP11-310K19 from 4, complete sequence
          Length = 171846

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 77    aaaccaagagaagcactga 95
             |||||||||||||||||||
Sbjct: 16465 aaaccaagagaagcactga 16447
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>gb|AC092540.4| Homo sapiens BAC clone RP11-190E23 from 4, complete sequence
          Length = 133801

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 23    ccaaaaataacattaaaag 41
             |||||||||||||||||||
Sbjct: 99184 ccaaaaataacattaaaag 99202
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>dbj|AK143495.1| Mus musculus 8 cells embryo 8 cells cDNA, RIKEN full-length enriched
            library, clone:E860026L12 product:weakly similar to
            MAPK-interacting and spindle-stabilizing protein [Mus
            musculus], full insert sequence
          Length = 4534

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 13   aactggtgacccaaaaata 31
            |||||||||||||||||||
Sbjct: 1904 aactggtgacccaaaaata 1922
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>gb|AC068721.4| Homo sapiens BAC clone RP11-545L5 from 4, complete sequence
          Length = 177270

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 77     aaaccaagagaagcactga 95
              |||||||||||||||||||
Sbjct: 163714 aaaccaagagaagcactga 163696
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>dbj|AK168694.1| Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN
            full-length enriched library, clone:I920046C22
            product:weakly similar to MAPK-interacting and
            spindle-stabilizing protein [Mus musculus], full insert
            sequence
          Length = 4524

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 13   aactggtgacccaaaaata 31
            |||||||||||||||||||
Sbjct: 2010 aactggtgacccaaaaata 2028
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>ref|XM_690286.1| PREDICTED: Danio rerio similar to telomere-associated protein RIF1
            (LOC567001), mRNA
          Length = 7588

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 118  ccagtcaaagtactactag 136
            |||||||||||||||||||
Sbjct: 4367 ccagtcaaagtactactag 4349
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>gb|AC152397.6| Mus musculus chromosome 18, clone RP23-307D12, complete sequence
          Length = 218647

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 103    tagagttactgcccaccag 121
              |||||||||||||||||||
Sbjct: 188572 tagagttactgcccaccag 188590
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>dbj|AK169333.1| Mus musculus cDNA, RIKEN full-length enriched library,
            clone:I920184N10 product:weakly similar to
            MAPK-interacting and spindle-stabilizing protein [Mus
            musculus], full insert sequence
          Length = 4494

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 13   aactggtgacccaaaaata 31
            |||||||||||||||||||
Sbjct: 1980 aactggtgacccaaaaata 1998
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>emb|BX470097.9| Zebrafish DNA sequence from clone DKEYP-114E10 in linkage group 5,
             complete sequence
          Length = 96967

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    aataacattaaaagcttaa 46
             |||||||||||||||||||
Sbjct: 67663 aataacattaaaagcttaa 67645
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>emb|BX004804.10| Zebrafish DNA sequence from clone CH211-39M5 in linkage group 5,
             complete sequence
          Length = 170010

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    aataacattaaaagcttaa 46
             |||||||||||||||||||
Sbjct: 61427 aataacattaaaagcttaa 61409
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>dbj|AK048061.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130032J12 product:hypothetical protein,
            full insert sequence
          Length = 2846

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 13   aactggtgacccaaaaata 31
            |||||||||||||||||||
Sbjct: 2017 aactggtgacccaaaaata 2035
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>dbj|AK033615.1| Mus musculus adult male cecum cDNA, RIKEN full-length enriched
            library, clone:9130202B12 product:similar to HYPOTHETICAL
            24.3 KDA PROTEIN [Homo sapiens], full insert sequence
          Length = 2601

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 13   aactggtgacccaaaaata 31
            |||||||||||||||||||
Sbjct: 1536 aactggtgacccaaaaata 1554
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>gb|AC016991.5|AC016991 Homo sapiens BAC clone RP11-17E15 from Y, complete sequence
          Length = 174402

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 67     gataattttaaaaccaaga 85
              |||||||||||||||||||
Sbjct: 158417 gataattttaaaaccaaga 158435
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>emb|BX682234.9| Zebrafish DNA sequence from clone CH211-193E13, complete sequence
          Length = 165319

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 28     aataacattaaaagcttaa 46
              |||||||||||||||||||
Sbjct: 158991 aataacattaaaagcttaa 158973
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>emb|BX294113.7| Zebrafish DNA sequence from clone DKEYP-73G8 in linkage group 24,
             complete sequence
          Length = 199820

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 25    aaaaataacattaaaagct 43
             |||||||||||||||||||
Sbjct: 68674 aaaaataacattaaaagct 68656
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 39       aagcttaactcagtaactg 57
                |||||||||||||||||||
Sbjct: 20463197 aagcttaactcagtaactg 20463179
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>gb|AC013246.13|AC013246 Homo sapiens 12 BAC RP11-997P16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 161822

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 70    aattttaaaaccaagagaa 88
             |||||||||||||||||||
Sbjct: 51582 aattttaaaaccaagagaa 51600
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>gb|AC009111.8| Homo sapiens chromosome 16 clone RP11-468D1, complete sequence
          Length = 153456

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 42    cttaactcagtaactgaca 60
             |||||||||||||||||||
Sbjct: 84215 cttaactcagtaactgaca 84197
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>gb|BC089366.1| Mus musculus RIKEN cDNA C130032J12 gene, mRNA (cDNA clone
            IMAGE:6850209), partial cds
          Length = 4207

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 13   aactggtgacccaaaaata 31
            |||||||||||||||||||
Sbjct: 1675 aactggtgacccaaaaata 1693
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>dbj|BS000033.1| Pan troglodytes chromosome 22 clone:PTB-062D04, map 22, complete
             sequences
          Length = 160142

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 23    ccaaaaataacattaaaag 41
             |||||||||||||||||||
Sbjct: 69181 ccaaaaataacattaaaag 69163
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>gb|AF074099.1|AF074099 Salvelinus namaycush clone C6 intergenic spacer region, partial
          sequence
          Length = 758

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 10 agcaactggtgacccaaaaataa 32
          |||||||||| ||||||||||||
Sbjct: 27 agcaactggtaacccaaaaataa 49
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>gb|AF074094.1|AF074094 Salvelinus namaycush clone A1 5' external transcribed spacer and
          intergenic spacer region, partial sequence
          Length = 2692

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 10 agcaactggtgacccaaaaataa 32
          |||||||||| ||||||||||||
Sbjct: 26 agcaactggtaacccaaaaataa 48
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>gb|AC146966.3| Bos taurus clone RP42-139G14, complete sequence
          Length = 179474

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 69    taattttaaaaccaagaga 87
             |||||||||||||||||||
Sbjct: 23578 taattttaaaaccaagaga 23560
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>emb|AL974314.21| Zebrafish DNA sequence from clone DKEY-89P3 in linkage group 9,
             complete sequence
          Length = 192510

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 118   ccagtcaaagtactactag 136
             |||||||||||||||||||
Sbjct: 21292 ccagtcaaagtactactag 21310
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>emb|BX950199.14| Zebrafish DNA sequence from clone CH211-215A11 in linkage group 24,
              complete sequence
          Length = 213091

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 25     aaaaataacattaaaagct 43
              |||||||||||||||||||
Sbjct: 207083 aaaaataacattaaaagct 207101
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>dbj|AP001669.1| Homo sapiens genomic DNA, chromosome 21q, section 13/105
          Length = 340000

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 23     ccaaaaataacattaaaag 41
              |||||||||||||||||||
Sbjct: 179722 ccaaaaataacattaaaag 179704
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>emb|CR376750.10| Zebrafish DNA sequence from clone DKEY-92I15 in linkage group 16,
             complete sequence
          Length = 143647

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 71    attttaaaaccaagagaag 89
             |||||||||||||||||||
Sbjct: 43058 attttaaaaccaagagaag 43076
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 39       aagcttaactcagtaactg 57
                |||||||||||||||||||
Sbjct: 20474469 aagcttaactcagtaactg 20474451
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>ref|NM_178684.3| Mus musculus RIKEN cDNA C130032J12 gene (C130032J12Rik), mRNA
          Length = 4494

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 13   aactggtgacccaaaaata 31
            |||||||||||||||||||
Sbjct: 1980 aactggtgacccaaaaata 1998
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>gb|AC140337.3| Mus musculus BAC clone RP23-238H7 from 1, complete sequence
          Length = 229594

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 69    taattttaaaaccaagaga 87
             |||||||||||||||||||
Sbjct: 99627 taattttaaaaccaagaga 99645
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>emb|AL773540.18| Mouse DNA sequence from clone RP23-177L19 on chromosome 2, complete
            sequence
          Length = 217148

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 95   aatagaactagagttactg 113
            |||||||||||||||||||
Sbjct: 9498 aatagaactagagttactg 9480
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>gb|AC156016.2| Mus musculus BAC clone RP24-320A12 from chromosome 14, complete
             sequence
          Length = 154465

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    aactggtgacccaaaaata 31
             |||||||||||||||||||
Sbjct: 43772 aactggtgacccaaaaata 43754
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>gb|U10438.3| Caenorhabditis elegans cosmid B0280, complete sequence
          Length = 42889

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 25   aaaaataacattaaaagct 43
            |||||||||||||||||||
Sbjct: 9467 aaaaataacattaaaagct 9485
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>emb|AL731650.26| Mouse DNA sequence from clone RP23-368K3 on chromosome 8, complete
             sequence
          Length = 185422

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 69    taattttaaaaccaagaga 87
             |||||||||||||||||||
Sbjct: 51535 taattttaaaaccaagaga 51517
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>emb|AL805933.7| Mouse DNA sequence from clone RP23-31P9 on chromosome X, complete
             sequence
          Length = 209410

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 25    aaaaataacattaaaagct 43
             |||||||||||||||||||
Sbjct: 25441 aaaaataacattaaaagct 25459
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>dbj|AP000457.3| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B159E1,
             LL56-APP region, complete sequence
          Length = 165221

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 23    ccaaaaataacattaaaag 41
             |||||||||||||||||||
Sbjct: 64108 ccaaaaataacattaaaag 64090


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,697,535
Number of Sequences: 3902068
Number of extensions: 1697535
Number of successful extensions: 124049
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123836
Number of HSP's gapped (non-prelim): 212
length of query: 156
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 134
effective length of database: 17,147,199,772
effective search space: 2297724769448
effective search space used: 2297724769448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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