| Clone Name | rbast23d07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC011676.10| Homo sapiens chromosome , clone RP11-10J21, complete sequence Length = 197630 Score = 42.1 bits (21), Expect = 0.34 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 ccacaaatgctgtggcaaatc 88 ||||||||||||||||||||| Sbjct: 176186 ccacaaatgctgtggcaaatc 176206
>gb|AC100803.11| Homo sapiens chromosome 8, clone CTD-3064M3, complete sequence Length = 152418 Score = 42.1 bits (21), Expect = 0.34 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 ccacaaatgctgtggcaaatc 88 ||||||||||||||||||||| Sbjct: 3333 ccacaaatgctgtggcaaatc 3353
>dbj|AP005792.5| Homo sapiens genomic DNA, chromosome 8q24, clone: KB1533H12, complete sequence Length = 141371 Score = 42.1 bits (21), Expect = 0.34 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 ccacaaatgctgtggcaaatc 88 ||||||||||||||||||||| Sbjct: 3511 ccacaaatgctgtggcaaatc 3531
>emb|Z84481.1|HS440O21 Human DNA sequence from clone RP3-440O21 on chromosome X, complete sequence Length = 107677 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 gctattcaataacaatgttg 60 |||||||||||||||||||| Sbjct: 8639 gctattcaataacaatgttg 8620
>emb|AL365273.25| Human DNA sequence from clone RP11-429G19 on chromosome 10 Contains the 3' end of the ENTPD1 gene for ectonucleoside triphosphate diphosphohydrolase 1, a novel gene, the 3' end of two novel genes (FLJ34077, FLJ39150), complete sequence Length = 191942 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 atcacattcaaaggcaagaa 109 |||||||||||||||||||| Sbjct: 122579 atcacattcaaaggcaagaa 122560
>gb|AC166262.3| Mus musculus BAC RP23-256D10 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 175073 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 aaaaacaccaattaacatat 31 |||||||||||||||||||| Sbjct: 9059 aaaaacaccaattaacatat 9078
>gb|AC159478.7| Mus musculus 10 BAC RP23-460F17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 174480 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 aaaaacaccaattaacatat 31 |||||||||||||||||||| Sbjct: 62444 aaaaacaccaattaacatat 62425
>dbj|AP001684.1| Homo sapiens genomic DNA, chromosome 21q, section 28/105 Length = 340000 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 acatataataaggaggctat 45 |||||||||||||||||||| Sbjct: 217369 acatataataaggaggctat 217350
>dbj|AP000953.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B697O17, LL56-APP region, complete sequence Length = 96067 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 acatataataaggaggctat 45 |||||||||||||||||||| Sbjct: 39234 acatataataaggaggctat 39215
>gb|AC169813.2| Rhesus Macaque BAC CH250-16M3 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 168861 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 93 acattcaaaggcaagaagttcaa 115 ||||||||| ||||||||||||| Sbjct: 102765 acattcaaatgcaagaagttcaa 102787
>gb|AC107760.9| Mus musculus chromosome 15, clone RP23-189K4, complete sequence Length = 178900 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 90 atcacattcaaaggcaagaagtt 112 ||||||||||||||||| ||||| Sbjct: 127865 atcacattcaaaggcaataagtt 127887
>gb|AC162892.7| Mus musculus chromosome 5, clone RP23-257D19, complete sequence Length = 155647 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 44 attcaataacaatgttgca 62 ||||||||||||||||||| Sbjct: 33893 attcaataacaatgttgca 33911
>gb|AE002142.1| Ureaplasma parvum serovar 3 str. ATCC 700970 section 43 of 59 of the complete genome Length = 12089 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 18 accaattaacatataataa 36 ||||||||||||||||||| Sbjct: 8421 accaattaacatataataa 8439
>gb|AC102569.34| Mus musculus chromosome 12, clone RP23-226F7, complete sequence Length = 167957 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 94 cattcaaaggcaagaagtt 112 ||||||||||||||||||| Sbjct: 105150 cattcaaaggcaagaagtt 105132
>gb|AC135110.3| Mus musculus BAC clone RP23-392G14 from chromosome 18, complete sequence Length = 182942 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 aacaccaattaacatataa 33 ||||||||||||||||||| Sbjct: 117776 aacaccaattaacatataa 117794
>gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosome 1, complete sequence Length = 200595 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 12 aaaaacaccaattaacatataat 34 ||||| ||||||||||||||||| Sbjct: 143572 aaaaagaccaattaacatataat 143594
>gb|AC107234.8| Mus musculus chromosome 10, clone RP23-195B22, complete sequence Length = 218031 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 aaaacaccaattaacatat 31 ||||||||||||||||||| Sbjct: 69263 aaaacaccaattaacatat 69245
>gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, complete sequence Length = 203739 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 12 aaaaacaccaattaacatataat 34 ||||| ||||||||||||||||| Sbjct: 9941 aaaaagaccaattaacatataat 9963
>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete sequence Length = 146664 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 1 aaaccggccacaaaaacaccaat 23 ||||||||||||||| ||||||| Sbjct: 26358 aaaccggccacaaaaccaccaat 26380
>emb|AL392110.12| Human DNA sequence from clone RP11-29M23 on chromosome 9, complete sequence Length = 167921 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 48 aataacaatgttgcaaaac 66 ||||||||||||||||||| Sbjct: 103210 aataacaatgttgcaaaac 103228
>emb|AJ849887.1| Hypocrea lixii 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene (partial), strain RRLF-14 Length = 601 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 23 ttaacatataataaggagg 41 ||||||||||||||||||| Sbjct: 579 ttaacatataataaggagg 597
>gb|AC107421.6| Homo sapiens 3 BAC RP11-8J23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160396 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 aaaacaccaattaacatat 31 ||||||||||||||||||| Sbjct: 15018 aaaacaccaattaacatat 15036
>gb|AC091884.4| Homo sapiens chromosome 5 clone RP11-109J4, complete sequence Length = 192149 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 ctattcaataacaatgttg 60 ||||||||||||||||||| Sbjct: 17154 ctattcaataacaatgttg 17136
>gb|AC091928.3| Homo sapiens chromosome 5 clone RP11-292F10, complete sequence Length = 200923 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 ctattcaataacaatgttg 60 ||||||||||||||||||| Sbjct: 177726 ctattcaataacaatgttg 177708
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 1 aaaccggccacaaaaacaccaat 23 ||||||||||||||| ||||||| Sbjct: 18523347 aaaccggccacaaaaccaccaat 18523369
>dbj|AB081587.1| Prunus dulcis genes for S-locus F-Box protein c, Sc-RNase, S haplotype-specific F-box protein c, complete cds Length = 71953 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 atataataaggaggctatt 46 ||||||||||||||||||| Sbjct: 70599 atataataaggaggctatt 70617
>emb|BX640579.10| Zebrafish DNA sequence from clone CH211-266K5 in linkage group 19, complete sequence Length = 168768 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 cacaaaaacaccaattaac 27 ||||||||||||||||||| Sbjct: 162812 cacaaaaacaccaattaac 162794
>gb|AC161802.7| Mus musculus chromosome 5, clone RP23-477G6, complete sequence Length = 176484 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 44 attcaataacaatgttgca 62 ||||||||||||||||||| Sbjct: 19846 attcaataacaatgttgca 19828
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 1 aaaccggccacaaaaacaccaat 23 ||||||||||||||| ||||||| Sbjct: 18533400 aaaccggccacaaaaccaccaat 18533422
>gb|AC154874.9| Mus musculus chromosome 15, clone RP23-227M7, complete sequence Length = 206926 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 90 atcacattcaaaggcaagaagtt 112 ||||||||||||||||| ||||| Sbjct: 169563 atcacattcaaaggcaataagtt 169541 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,204,971 Number of Sequences: 3902068 Number of extensions: 1204971 Number of successful extensions: 82601 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82512 Number of HSP's gapped (non-prelim): 89 length of query: 115 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 94 effective length of database: 17,151,101,840 effective search space: 1612203572960 effective search space used: 1612203572960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)