ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast23d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC011676.10| Homo sapiens chromosome , clone RP11-10J21, comp... 42 0.34
2gb|AC100803.11| Homo sapiens chromosome 8, clone CTD-3064M3, com... 42 0.34
3dbj|AP005792.5| Homo sapiens genomic DNA, chromosome 8q24, clone... 42 0.34
4emb|Z84481.1|HS440O21 Human DNA sequence from clone RP3-440O21 o... 40 1.3
5emb|AL365273.25| Human DNA sequence from clone RP11-429G19 on ch... 40 1.3
6gb|AC166262.3| Mus musculus BAC RP23-256D10 (Roswell Park Cance... 40 1.3
7gb|AC159478.7| Mus musculus 10 BAC RP23-460F17 (Roswell Park Can... 40 1.3
8dbj|AP001684.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 1.3
9dbj|AP000953.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 1.3
10gb|AC169813.2| Rhesus Macaque BAC CH250-16M3 (Children's Hospit... 38 5.3
11gb|AC107760.9| Mus musculus chromosome 15, clone RP23-189K4, com... 38 5.3
12gb|AC162892.7| Mus musculus chromosome 5, clone RP23-257D19, com... 38 5.3
13gb|AE002142.1| Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 38 5.3
14gb|AC102569.34| Mus musculus chromosome 12, clone RP23-226F7, co... 38 5.3
15gb|AC135110.3| Mus musculus BAC clone RP23-392G14 from chromosom... 38 5.3
16gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosom... 38 5.3
17gb|AC107234.8| Mus musculus chromosome 10, clone RP23-195B22, co... 38 5.3
18gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, comple... 38 5.3
19gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 gen... 38 5.3
20emb|AL392110.12| Human DNA sequence from clone RP11-29M23 on chr... 38 5.3
21emb|AJ849887.1| Hypocrea lixii 18S rRNA gene (partial), ITS1, 5.... 38 5.3
22gb|AC107421.6| Homo sapiens 3 BAC RP11-8J23 (Roswell Park Cancer... 38 5.3
23gb|AC091884.4| Homo sapiens chromosome 5 clone RP11-109J4, compl... 38 5.3
24gb|AC091928.3| Homo sapiens chromosome 5 clone RP11-292F10, comp... 38 5.3
25dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.3
26dbj|AB081587.1| Prunus dulcis genes for S-locus F-Box protein c,... 38 5.3
27emb|BX640579.10| Zebrafish DNA sequence from clone CH211-266K5 i... 38 5.3
28gb|AC161802.7| Mus musculus chromosome 5, clone RP23-477G6, comp... 38 5.3
29gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 38 5.3
30gb|AC154874.9| Mus musculus chromosome 15, clone RP23-227M7, com... 38 5.3

>gb|AC011676.10| Homo sapiens chromosome , clone RP11-10J21, complete sequence
          Length = 197630

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 68     ccacaaatgctgtggcaaatc 88
              |||||||||||||||||||||
Sbjct: 176186 ccacaaatgctgtggcaaatc 176206



to top

>gb|AC100803.11| Homo sapiens chromosome 8, clone CTD-3064M3, complete sequence
          Length = 152418

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 68   ccacaaatgctgtggcaaatc 88
            |||||||||||||||||||||
Sbjct: 3333 ccacaaatgctgtggcaaatc 3353



to top

>dbj|AP005792.5| Homo sapiens genomic DNA, chromosome 8q24, clone: KB1533H12, complete
            sequence
          Length = 141371

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 68   ccacaaatgctgtggcaaatc 88
            |||||||||||||||||||||
Sbjct: 3511 ccacaaatgctgtggcaaatc 3531



to top

>emb|Z84481.1|HS440O21 Human DNA sequence from clone RP3-440O21 on chromosome X, complete
            sequence
          Length = 107677

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 41   gctattcaataacaatgttg 60
            ||||||||||||||||||||
Sbjct: 8639 gctattcaataacaatgttg 8620



to top

>emb|AL365273.25| Human DNA sequence from clone RP11-429G19 on chromosome 10 Contains the
              3' end of the ENTPD1 gene for ectonucleoside triphosphate
              diphosphohydrolase 1, a novel gene, the 3' end of two novel
              genes (FLJ34077, FLJ39150), complete sequence
          Length = 191942

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 90     atcacattcaaaggcaagaa 109
              ||||||||||||||||||||
Sbjct: 122579 atcacattcaaaggcaagaa 122560



to top

>gb|AC166262.3| Mus musculus  BAC RP23-256D10 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 175073

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 12   aaaaacaccaattaacatat 31
            ||||||||||||||||||||
Sbjct: 9059 aaaaacaccaattaacatat 9078



to top

>gb|AC159478.7| Mus musculus 10 BAC RP23-460F17 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 174480

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    aaaaacaccaattaacatat 31
             ||||||||||||||||||||
Sbjct: 62444 aaaaacaccaattaacatat 62425



to top

>dbj|AP001684.1| Homo sapiens genomic DNA, chromosome 21q, section 28/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     acatataataaggaggctat 45
              ||||||||||||||||||||
Sbjct: 217369 acatataataaggaggctat 217350



to top

>dbj|AP000953.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B697O17,
             LL56-APP region, complete sequence
          Length = 96067

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    acatataataaggaggctat 45
             ||||||||||||||||||||
Sbjct: 39234 acatataataaggaggctat 39215



to top

>gb|AC169813.2| Rhesus Macaque  BAC CH250-16M3 (Children's Hospital Oakland Research
              Institute Rhesus macaque Adult Male BAC Library) complete
              sequence
          Length = 168861

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 93     acattcaaaggcaagaagttcaa 115
              ||||||||| |||||||||||||
Sbjct: 102765 acattcaaatgcaagaagttcaa 102787



to top

>gb|AC107760.9| Mus musculus chromosome 15, clone RP23-189K4, complete sequence
          Length = 178900

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 90     atcacattcaaaggcaagaagtt 112
              ||||||||||||||||| |||||
Sbjct: 127865 atcacattcaaaggcaataagtt 127887



to top

>gb|AC162892.7| Mus musculus chromosome 5, clone RP23-257D19, complete sequence
          Length = 155647

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 44    attcaataacaatgttgca 62
             |||||||||||||||||||
Sbjct: 33893 attcaataacaatgttgca 33911



to top

>gb|AE002142.1| Ureaplasma parvum serovar 3 str. ATCC 700970 section 43 of 59 of the
            complete genome
          Length = 12089

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 18   accaattaacatataataa 36
            |||||||||||||||||||
Sbjct: 8421 accaattaacatataataa 8439



to top

>gb|AC102569.34| Mus musculus chromosome 12, clone RP23-226F7, complete sequence
          Length = 167957

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 94     cattcaaaggcaagaagtt 112
              |||||||||||||||||||
Sbjct: 105150 cattcaaaggcaagaagtt 105132



to top

>gb|AC135110.3| Mus musculus BAC clone RP23-392G14 from chromosome 18, complete sequence
          Length = 182942

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 15     aacaccaattaacatataa 33
              |||||||||||||||||||
Sbjct: 117776 aacaccaattaacatataa 117794



to top

>gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosome 1, complete sequence
          Length = 200595

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 12     aaaaacaccaattaacatataat 34
              ||||| |||||||||||||||||
Sbjct: 143572 aaaaagaccaattaacatataat 143594



to top

>gb|AC107234.8| Mus musculus chromosome 10, clone RP23-195B22, complete sequence
          Length = 218031

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    aaaacaccaattaacatat 31
             |||||||||||||||||||
Sbjct: 69263 aaaacaccaattaacatat 69245



to top

>gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, complete sequence
          Length = 203739

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 12   aaaaacaccaattaacatataat 34
            ||||| |||||||||||||||||
Sbjct: 9941 aaaaagaccaattaacatataat 9963



to top

>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete
             sequence
          Length = 146664

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 1     aaaccggccacaaaaacaccaat 23
             ||||||||||||||| |||||||
Sbjct: 26358 aaaccggccacaaaaccaccaat 26380



to top

>emb|AL392110.12| Human DNA sequence from clone RP11-29M23 on chromosome 9, complete
              sequence
          Length = 167921

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 48     aataacaatgttgcaaaac 66
              |||||||||||||||||||
Sbjct: 103210 aataacaatgttgcaaaac 103228



to top

>emb|AJ849887.1| Hypocrea lixii 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2
           and 28S rRNA gene (partial), strain RRLF-14
          Length = 601

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 23  ttaacatataataaggagg 41
           |||||||||||||||||||
Sbjct: 579 ttaacatataataaggagg 597



to top

>gb|AC107421.6| Homo sapiens 3 BAC RP11-8J23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 160396

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    aaaacaccaattaacatat 31
             |||||||||||||||||||
Sbjct: 15018 aaaacaccaattaacatat 15036



to top

>gb|AC091884.4| Homo sapiens chromosome 5 clone RP11-109J4, complete sequence
          Length = 192149

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 42    ctattcaataacaatgttg 60
             |||||||||||||||||||
Sbjct: 17154 ctattcaataacaatgttg 17136



to top

>gb|AC091928.3| Homo sapiens chromosome 5 clone RP11-292F10, complete sequence
          Length = 200923

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 42     ctattcaataacaatgttg 60
              |||||||||||||||||||
Sbjct: 177726 ctattcaataacaatgttg 177708



to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 1        aaaccggccacaaaaacaccaat 23
                ||||||||||||||| |||||||
Sbjct: 18523347 aaaccggccacaaaaccaccaat 18523369



to top

>dbj|AB081587.1| Prunus dulcis genes for S-locus F-Box protein c, Sc-RNase, S
             haplotype-specific F-box protein c, complete cds
          Length = 71953

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 28    atataataaggaggctatt 46
             |||||||||||||||||||
Sbjct: 70599 atataataaggaggctatt 70617



to top

>emb|BX640579.10| Zebrafish DNA sequence from clone CH211-266K5 in linkage group 19,
              complete sequence
          Length = 168768

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 9      cacaaaaacaccaattaac 27
              |||||||||||||||||||
Sbjct: 162812 cacaaaaacaccaattaac 162794



to top

>gb|AC161802.7| Mus musculus chromosome 5, clone RP23-477G6, complete sequence
          Length = 176484

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 44    attcaataacaatgttgca 62
             |||||||||||||||||||
Sbjct: 19846 attcaataacaatgttgca 19828



to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 1        aaaccggccacaaaaacaccaat 23
                ||||||||||||||| |||||||
Sbjct: 18533400 aaaccggccacaaaaccaccaat 18533422



to top

>gb|AC154874.9| Mus musculus chromosome 15, clone RP23-227M7, complete sequence
          Length = 206926

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 90     atcacattcaaaggcaagaagtt 112
              ||||||||||||||||| |||||
Sbjct: 169563 atcacattcaaaggcaataagtt 169541


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,204,971
Number of Sequences: 3902068
Number of extensions: 1204971
Number of successful extensions: 82601
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82512
Number of HSP's gapped (non-prelim): 89
length of query: 115
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 94
effective length of database: 17,151,101,840
effective search space: 1612203572960
effective search space used: 1612203572960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top