>MUTS_ENTFA (Q82ZA2) DNA mismatch repair protein mutS|
          Length = 858

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 71  PNELPNAPSTAYKESQHPILKNILG*QGYLPYSIQ 175
           P    N  + A  E +HP+++ +LG Q Y+P SI+
Sbjct: 563 PTLRSNTKNLAIVEGRHPVVEKVLGHQEYIPNSIR 597

>PEPA4_MACFU (P27678) Pepsin A-4 precursor (EC 3.4.23.1) (Pepsin I/II)|
          Length = 388

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +1

Query: 142 GVAGL--PSILDSGSKAFFDNLWQNR 213
           G+ GL  PSI  SG+   FDN+W  R
Sbjct: 181 GILGLAYPSISSSGATPVFDNIWNQR 206

>PRIM_MYCGE (P47492) DNA primase (EC 2.7.7.-)|
          Length = 607

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +2

Query: 23  FDNNTDYCNVHRHAKLPNELPNAPS----TAYKESQHPILK 133
           FDNN  Y N   HA+ P EL    +    TA++E+ + + K
Sbjct: 449 FDNNRFYINTSGHAQPPQELQKTTAALVQTAFEEAVNELWK 489

>MUTS_LACSS (Q38YR4) DNA mismatch repair protein mutS|
          Length = 867

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 110 ESQHPILKNILG*QGYLPYSIQAQK 184
           + +HP+++ +LG Q Y+P ++Q  K
Sbjct: 576 DGRHPVVEKVLGRQKYIPNAVQMGK 600


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,152,790
Number of Sequences: 219361
Number of extensions: 613394
Number of successful extensions: 1684
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1684
length of database: 80,573,946
effective HSP length: 47
effective length of database: 70,263,979
effective search space used: 1686335496
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)