>gb|AY103552.1| Zea mays PCO075057 mRNA sequence
          Length = 1380

 Score =  200 bits (101), Expect = 1e-48
 Identities = 116/121 (95%)
 Strand = Plus / Minus

                                                                        
Query: 94   tcagcggccggcgcactcgggcggctggacggggaagcggtcggtgtcgacgcagtagtc 153
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1083 tcagcggccggcgcactcgggcggctgcacggggaagcggtcggtgtcgacgcagtagtc 1024

                                                                        
Query: 154  gtagacgaggtggtgcgcgcgcgcccacaccagctggtggctctggtgcacggacagctc 213
            ||||||||||||||||||||||| |||||| |||||||||||||||||||||  ||||||
Sbjct: 1023 gtagacgaggtggtgcgcgcgcgtccacacgagctggtggctctggtgcacgctcagctc 964

             
Query: 214  c 214
            |
Sbjct: 963  c 963

>emb|AL732336.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0105C05, complete
             sequence
          Length = 62215

 Score =  200 bits (101), Expect = 1e-48
 Identities = 119/125 (95%)
 Strand = Plus / Minus

                                                                         
Query: 98    cggccggcgcactcgggcggctggacggggaagcggtcggtgtcgacgcagtagtcgtag 157
             |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32264 cggccggcgcactccggcggctggacggggaagcggtcggtgtcgacgcagtagtcgtag 32205

                                                                         
Query: 158   acgaggtggtgcgcgcgcgcccacaccagctggtggctctggtgcacggacagctcctgc 217
             ||||||||||||||||||||||| || ||||||||||||||||||||||  ||||||| |
Sbjct: 32204 acgaggtggtgcgcgcgcgcccagacgagctggtggctctggtgcacggtgagctcctcc 32145

                  
Query: 218   atgtc 222
             |||||
Sbjct: 32144 atgtc 32140

>emb|AL606650.5|OSJN00097 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015D13,
             complete sequence
          Length = 127135

 Score =  194 bits (98), Expect = 8e-47
 Identities = 116/122 (95%)
 Strand = Plus / Minus

                                                                         
Query: 101   ccggcgcactcgggcggctggacggggaagcggtcggtgtcgacgcagtagtcgtagacg 160
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76780 ccggcgcactccggcggctggacggggaagcggtcggtgtcgacgcagtagtcgtagacg 76721

                                                                         
Query: 161   aggtggtgcgcgcgcgcccacaccagctggtggctctggtgcacggacagctcctgcatg 220
             ||||||||||||||||||||||| ||||||||| ||||||||||||  ||||||| ||||
Sbjct: 76720 aggtggtgcgcgcgcgcccacacgagctggtggttctggtgcacggtgagctcctccatg 76661

               
Query: 221   tc 222
             ||
Sbjct: 76660 tc 76659

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  194 bits (98), Expect = 8e-47
 Identities = 116/122 (95%)
 Strand = Plus / Minus

                                                                            
Query: 101      ccggcgcactcgggcggctggacggggaagcggtcggtgtcgacgcagtagtcgtagacg 160
                ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32181091 ccggcgcactccggcggctggacggggaagcggtcggtgtcgacgcagtagtcgtagacg 32181032

                                                                            
Query: 161      aggtggtgcgcgcgcgcccacaccagctggtggctctggtgcacggacagctcctgcatg 220
                ||||||||||||||||||||||| ||||||||| ||||||||||||  ||||||| ||||
Sbjct: 32181031 aggtggtgcgcgcgcgcccacacgagctggtggttctggtgcacggtgagctcctccatg 32180972

                  
Query: 221      tc 222
                ||
Sbjct: 32180971 tc 32180970



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 70       ggcggccggcgacgacgcgg 89
                ||||||||||||||||||||
Sbjct: 29736788 ggcggccggcgacgacgcgg 29736769

>dbj|AK099331.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024P08, full
            insert sequence
          Length = 1199

 Score =  194 bits (98), Expect = 8e-47
 Identities = 116/122 (95%)
 Strand = Plus / Minus

                                                                        
Query: 101  ccggcgcactcgggcggctggacggggaagcggtcggtgtcgacgcagtagtcgtagacg 160
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 ccggcgcactccggcggctggacggggaagcggtcggtgtcgacgcagtagtcgtagacg 943

                                                                        
Query: 161  aggtggtgcgcgcgcgcccacaccagctggtggctctggtgcacggacagctcctgcatg 220
            ||||||||||||||||||||||| ||||||||| ||||||||||||  ||||||| ||||
Sbjct: 942  aggtggtgcgcgcgcgcccacacgagctggtggttctggtgcacggtgagctcctccatg 883

              
Query: 221  tc 222
            ||
Sbjct: 882  tc 881

>dbj|AK059277.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-C07, full
            insert sequence
          Length = 1279

 Score =  194 bits (98), Expect = 8e-47
 Identities = 116/122 (95%)
 Strand = Plus / Minus

                                                                        
Query: 101  ccggcgcactcgggcggctggacggggaagcggtcggtgtcgacgcagtagtcgtagacg 160
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 ccggcgcactccggcggctggacggggaagcggtcggtgtcgacgcagtagtcgtagacg 947

                                                                        
Query: 161  aggtggtgcgcgcgcgcccacaccagctggtggctctggtgcacggacagctcctgcatg 220
            ||||||||||||||||||||||| ||||||||| ||||||||||||  ||||||| ||||
Sbjct: 946  aggtggtgcgcgcgcgcccacacgagctggtggttctggtgcacggtgagctcctccatg 887

              
Query: 221  tc 222
            ||
Sbjct: 886  tc 885

>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 46.1 bits (23), Expect = 0.046
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 97     gcggccggcgcactcgggcggctggacgggg 127
              |||||||||||| || |||||||||||||||
Sbjct: 364572 gcggccggcgcagtccggcggctggacgggg 364602

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 67      ggaggcggccggcgacgacgcggcgg 92
               ||||||||||||||||| ||||||||
Sbjct: 3930356 ggaggcggccggcgacgccgcggcgg 3930381



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 154     gtagacgaggtggtgcgcgc 173
               ||||||||||||||||||||
Sbjct: 1350453 gtagacgaggtggtgcgcgc 1350434

>gb|BT017470.1| Zea mays clone EL01N0408C10.c mRNA sequence
          Length = 878

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 139 gtcgacgcagtagtcgtagacgagg 163
           |||| ||||||||||||||||||||
Sbjct: 717 gtcgtcgcagtagtcgtagacgagg 693

>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 116     ggctggacggggaagcggtcggtgt 140
               |||||||||||||||| ||||||||
Sbjct: 1692242 ggctggacggggaagccgtcggtgt 1692218

>dbj|AP000775.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-708B6, complete
              sequence
          Length = 189955

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 186    gctggtggctctggtgcacgg 206
              |||||||||||||||||||||
Sbjct: 136312 gctggtggctctggtgcacgg 136332

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 101     ccggcgcactcgggcggctgg 121
               |||||||||||||||||||||
Sbjct: 1735332 ccggcgcactcgggcggctgg 1735352



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 70      ggcggccggcgacgacgcgg 89
               ||||||||||||||||||||
Sbjct: 3129096 ggcggccggcgacgacgcgg 3129077

>gb|AC135957.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0037P02 map E61794SA, complete sequence
          Length = 131645

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 97    gcggccggcgcactcgggcggctg 120
             ||||||||||||| ||||||||||
Sbjct: 52247 gcggccggcgcacgcgggcggctg 52270

>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29
          Length = 303550

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     ggcgacgacgcggcggatca 96
              ||||||||||||||||||||
Sbjct: 280959 ggcgacgacgcggcggatca 280978

>emb|AL606658.5|OSJN00098 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0016D16,
              complete sequence
          Length = 133113

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     ggcggccggcgacgacgcgg 89
              ||||||||||||||||||||
Sbjct: 124008 ggcggccggcgacgacgcgg 123989

>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 67      ggaggcggccggcgacgacgcggc 90
               |||||||| |||||||||||||||
Sbjct: 1003499 ggaggcgggcggcgacgacgcggc 1003522

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 97      gcggccggcgcactcgggcggctg 120
               ||||||||||||| ||||||||||
Sbjct: 9499064 gcggccggcgcacgcgggcggctg 9499087

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 139      gtcgacgcagtagtcgtaga 158
                ||||||||||||||||||||
Sbjct: 10360113 gtcgacgcagtagtcgtaga 10360094

>dbj|AP005398.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0669G10
          Length = 133372

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 139  gtcgacgcagtagtcgtaga 158
            ||||||||||||||||||||
Sbjct: 2535 gtcgacgcagtagtcgtaga 2516

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 97      gcggccggcgcactcgggcggctg 120
               ||||||||||||| ||||||||||
Sbjct: 9570761 gcggccggcgcacgcgggcggctg 9570784

>emb|AL662981.3|OSJN00182 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06,
             complete sequence
          Length = 178552

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    ggcggccggcgacgacgcgg 89
             ||||||||||||||||||||
Sbjct: 17714 ggcggccggcgacgacgcgg 17695


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,366,552
Number of Sequences: 3902068
Number of extensions: 1366552
Number of successful extensions: 111481
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109774
Number of HSP's gapped (non-prelim): 1707
length of query: 222
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 200
effective length of database: 17,147,199,772
effective search space: 3429439954400
effective search space used: 3429439954400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)