ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast23c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_468380.1| Oryza sativa (japonica cultivar-group), mRNA 94 3e-16
2ref|XM_479913.1| Oryza sativa (japonica cultivar-group), mRNA 92 1e-15
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
4dbj|AP003886.3| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
5dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
6ref|XM_463833.1| Oryza sativa (japonica cultivar-group), mRNA 90 5e-15
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 90 5e-15
8dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic D... 90 5e-15
9dbj|AK058280.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 5e-15
10dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
11gb|AY109376.1| Zea mays CL7359_1 mRNA sequence 60 5e-06
12gb|AF188024.3| Homo sapiens chromosome 12 clone CTC-790L10 map 1... 42 1.1
13gb|AC022363.24| Homo sapiens 12 BAC RP11-1151B7 (Roswell Park Ca... 42 1.1
14gb|AY275833.1| Homo sapiens polymerase (DNA directed), alpha (PO... 42 1.1
15emb|CT485675.4| RP43-034D18, complete sequence 42 1.1
16gb|AC079375.24| Homo sapiens X BAC RP11-757E1 (Roswell Park Canc... 42 1.1
17gb|AC132941.21| Mus musculus chromosome 18, clone RP23-163E22, c... 40 4.3
18emb|CR955010.2| Medicago truncatula chromosome 5 clone mth2-8n12... 40 4.3
19gb|AY310768.1| Nicotiana benthamiana clone 7-369 unknown mRNA 40 4.3
20emb|AL035701.13|HS8B1 Human DNA sequence from clone RP1-8B1 on c... 40 4.3
21gb|AC023716.4| Drosophila melanogaster X BAC RP98-45E21 (Roswell... 40 4.3
22gb|AC023694.4| Drosophila melanogaster X BAC RP98-18B11 (Roswell... 40 4.3
23emb|BX470077.5| Zebrafish DNA sequence from clone CH211-136P17 i... 40 4.3
24dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
25emb|AL606603.3|OSJN00040 Oryza sativa genomic DNA, chromosome 4,... 40 4.3
26gb|AC000356.1|HSAC000356 Human cosmid g1346a312, complete sequence 40 4.3
27gb|AE003449.2| Drosophila melanogaster chromosome X, section 33 ... 40 4.3
28emb|AL606654.3|OSJN00100 Oryza sativa genomic DNA, chromosome 4,... 40 4.3
29gb|AC122462.5| Mus musculus BAC clone RP24-294G11 from 3, comple... 40 4.3

>ref|XM_468380.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 288

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 71/79 (89%)
 Strand = Plus / Minus

                                                                       
Query: 236 tccttggtgcggcctcggttccctctctgaagttgctcttgaacctcctgggcacatggc 295
           |||||||||| ||||| || |||||||||||||| |||||||||||| ||||||| ||||
Sbjct: 262 tccttggtgcagcctcagtcccctctctgaagttactcttgaacctcttgggcacgtggc 203

                              
Query: 296 gcatgtacctcatcctccc 314
           | | |||||||||||||||
Sbjct: 202 gaaggtacctcatcctccc 184



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>ref|XM_479913.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 177

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 55/58 (94%)
 Strand = Plus / Minus

                                                                     
Query: 259 tctctgaagttgctcttgaacctcctgggcacatggcgcatgtacctcatcctcccgg 316
           |||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct: 131 tctctgaagttgctcttgaacctcctaggcacatgtcgcatgtacctcatccttccgg 74



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 55/58 (94%)
 Strand = Plus / Minus

                                                                         
Query: 259     tctctgaagttgctcttgaacctcctgggcacatggcgcatgtacctcatcctcccgg 316
               |||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct: 1614723 tctctgaagttgctcttgaacctcctaggcacatgtcgcatgtacctcatccttccgg 1614666



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>dbj|AP003886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1163_G08
          Length = 150676

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 55/58 (94%)
 Strand = Plus / Minus

                                                                        
Query: 259    tctctgaagttgctcttgaacctcctgggcacatggcgcatgtacctcatcctcccgg 316
              |||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct: 142211 tctctgaagttgctcttgaacctcctaggcacatgtcgcatgtacctcatccttccgg 142154



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>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0582D05
          Length = 150483

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 55/58 (94%)
 Strand = Plus / Minus

                                                                       
Query: 259   tctctgaagttgctcttgaacctcctgggcacatggcgcatgtacctcatcctcccgg 316
             |||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct: 14223 tctctgaagttgctcttgaacctcctaggcacatgtcgcatgtacctcatccttccgg 14166



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>ref|XM_463833.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 511

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 51/53 (96%)
 Strand = Plus / Minus

                                                                
Query: 259 tctctgaagttgctcttgaacctcctgggcacatggcgcatgtacctcatcct 311
           |||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 295 tctctgaagttgctcttgaacctcctaggcacatgtcgcatgtacctcatcct 243



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 51/53 (96%)
 Strand = Plus / Minus

                                                                   
Query: 259    tctctgaagttgctcttgaacctcctgggcacatggcgcatgtacctcatcct 311
              |||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 635455 tctctgaagttgctcttgaacctcctaggcacatgtcgcatgtacctcatcct 635403



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                           
Query: 256      ccctctctgaagttgctcttgaacctcctgggcacatggcgcatgtacctcatcctccc 314
                |||||||||||||| |||||||||||| ||||||| ||||| | |||||||||||||||
Sbjct: 34937896 ccctctctgaagttactcttgaacctcttgggcacgtggcgaaggtacctcatcctccc 34937838



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 36       aacattcaaaactgaaggattaacgtcca 64
                ||||||||||||| |||||||||| ||||
Sbjct: 34938342 aacattcaaaactcaaggattaacatcca 34938314



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>dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0501G04
          Length = 156603

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 51/53 (96%)
 Strand = Plus / Minus

                                                                   
Query: 259    tctctgaagttgctcttgaacctcctgggcacatggcgcatgtacctcatcct 311
              |||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 113508 tctctgaagttgctcttgaacctcctaggcacatgtcgcatgtacctcatcct 113456



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>dbj|AK058280.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-C10, full
           insert sequence
          Length = 524

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 51/53 (96%)
 Strand = Plus / Minus

                                                                
Query: 259 tctctgaagttgctcttgaacctcctgggcacatggcgcatgtacctcatcct 311
           |||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 308 tctctgaagttgctcttgaacctcctaggcacatgtcgcatgtacctcatcct 256



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>dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1293_E04
          Length = 118192

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                        
Query: 256   ccctctctgaagttgctcttgaacctcctgggcacatggcgcatgtacctcatcctccc 314
             |||||||||||||| |||||||||||| ||||||| ||||| | |||||||||||||||
Sbjct: 97393 ccctctctgaagttactcttgaacctcttgggcacgtggcgaaggtacctcatcctccc 97335



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 36    aacattcaaaactgaaggattaacgtcca 64
             ||||||||||||| |||||||||| ||||
Sbjct: 97839 aacattcaaaactcaaggattaacatcca 97811



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>gb|AY109376.1| Zea mays CL7359_1 mRNA sequence
          Length = 641

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 259 tctctgaagttgctcttgaacctcctgggcacatggcgcatgtacctcatcctcccgg 316
           |||||||||||||||||||| |  |  ||||| |||||||||||||||||||| ||||
Sbjct: 291 tctctgaagttgctcttgaaacggcgaggcacgtggcgcatgtacctcatccttccgg 348



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>gb|AF188024.3| Homo sapiens chromosome 12 clone CTC-790L10 map 12p11.2, complete
             sequence
          Length = 111108

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 20    acatccgacacaattcaacat 40
             |||||||||||||||||||||
Sbjct: 31278 acatccgacacaattcaacat 31258



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>gb|AC022363.24| Homo sapiens 12 BAC RP11-1151B7 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 114933

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 20    acatccgacacaattcaacat 40
             |||||||||||||||||||||
Sbjct: 39385 acatccgacacaattcaacat 39365



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>gb|AY275833.1| Homo sapiens polymerase (DNA directed), alpha (POLA) gene, complete cds
          Length = 304837

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 117    taaaaacatagagttccagta 137
              |||||||||||||||||||||
Sbjct: 151768 taaaaacatagagttccagta 151788



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>emb|CT485675.4| RP43-034D18, complete sequence
          Length = 163081

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 117   taaaaacatagagttccagta 137
             |||||||||||||||||||||
Sbjct: 57002 taaaaacatagagttccagta 56982



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>gb|AC079375.24| Homo sapiens X BAC RP11-757E1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 172649

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 117   taaaaacatagagttccagta 137
             |||||||||||||||||||||
Sbjct: 57184 taaaaacatagagttccagta 57164



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>gb|AC132941.21| Mus musculus chromosome 18, clone RP23-163E22, complete sequence
          Length = 182073

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   gtgcggcctcggttccctct 261
             ||||||||||||||||||||
Sbjct: 16729 gtgcggcctcggttccctct 16710



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>emb|CR955010.2| Medicago truncatula chromosome 5 clone mth2-8n12, COMPLETE SEQUENCE
          Length = 105005

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 142   gcaacaaaaaagctaattttgatg 165
             ||||||||||| ||||||||||||
Sbjct: 78369 gcaacaaaaaacctaattttgatg 78346



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>gb|AY310768.1| Nicotiana benthamiana clone 7-369 unknown mRNA
          Length = 465

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 247 gcctcggttccctctctgaagttg 270
           ||||||||||| ||||||||||||
Sbjct: 279 gcctcggttccttctctgaagttg 256



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>emb|AL035701.13|HS8B1 Human DNA sequence from clone RP1-8B1 on chromosome 6p11.2-21.1
             Contains the ENPP5 gene for ectonucleotide
             pyrophosphatase/phosphodiesterase 5 (putative function),
             the  ENPP4 gene for ectonucleotide
             pyrophosphatase/phosphodiesterase 4 (putative function)
             (NPP4, KIAA0879) and a novel gene, complete sequence
          Length = 126956

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   aaaaaagctaattttgatga 166
             ||||||||||||||||||||
Sbjct: 55935 aaaaaagctaattttgatga 55916



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>gb|AC023716.4| Drosophila melanogaster X BAC RP98-45E21 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 169124

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   gaaagcaacaaaaaagctaa 157
             ||||||||||||||||||||
Sbjct: 31633 gaaagcaacaaaaaagctaa 31652



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>gb|AC023694.4| Drosophila melanogaster X BAC RP98-18B11 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 170301

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   gaaagcaacaaaaaagctaa 157
             ||||||||||||||||||||
Sbjct: 73808 gaaagcaacaaaaaagctaa 73827



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>emb|BX470077.5| Zebrafish DNA sequence from clone CH211-136P17 in linkage group 5,
             complete sequence
          Length = 165851

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    acaattcaacattcaaaact 48
             ||||||||||||||||||||
Sbjct: 45586 acaattcaacattcaaaact 45567



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 29      acaattcaacattcaaaactgaag 52
               |||||||||||| |||||||||||
Sbjct: 4286834 acaattcaacatgcaaaactgaag 4286857



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>emb|AL606603.3|OSJN00040 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050N09,
             complete sequence
          Length = 127117

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 29    acaattcaacattcaaaactgaag 52
             |||||||||||| |||||||||||
Sbjct: 34702 acaattcaacatgcaaaactgaag 34725



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>gb|AC000356.1|HSAC000356 Human cosmid g1346a312, complete sequence
          Length = 39716

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   aagaggctcccttgctcctt 240
             ||||||||||||||||||||
Sbjct: 17712 aagaggctcccttgctcctt 17693



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>gb|AE003449.2| Drosophila melanogaster chromosome X, section 33 of 74 of the complete
              sequence
          Length = 307201

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    gaaagcaacaaaaaagctaa 157
              ||||||||||||||||||||
Sbjct: 263635 gaaagcaacaaaaaagctaa 263654



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>emb|AL606654.3|OSJN00100 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0028M18,
              complete sequence
          Length = 132854

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 29     acaattcaacattcaaaactgaag 52
              |||||||||||| |||||||||||
Sbjct: 129898 acaattcaacatgcaaaactgaag 129921



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>gb|AC122462.5| Mus musculus BAC clone RP24-294G11 from 3, complete sequence
          Length = 160501

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 126    agagttccagtagaaagcaa 145
              ||||||||||||||||||||
Sbjct: 105907 agagttccagtagaaagcaa 105888


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,838,553
Number of Sequences: 3902068
Number of extensions: 2838553
Number of successful extensions: 54470
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54381
Number of HSP's gapped (non-prelim): 88
length of query: 323
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 301
effective length of database: 17,147,199,772
effective search space: 5161307131372
effective search space used: 5161307131372
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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