| Clone Name | rbast23c02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468380.1| Oryza sativa (japonica cultivar-group), mRNA Length = 288 Score = 93.7 bits (47), Expect = 3e-16 Identities = 71/79 (89%) Strand = Plus / Minus Query: 236 tccttggtgcggcctcggttccctctctgaagttgctcttgaacctcctgggcacatggc 295 |||||||||| ||||| || |||||||||||||| |||||||||||| ||||||| |||| Sbjct: 262 tccttggtgcagcctcagtcccctctctgaagttactcttgaacctcttgggcacgtggc 203 Query: 296 gcatgtacctcatcctccc 314 | | ||||||||||||||| Sbjct: 202 gaaggtacctcatcctccc 184
>ref|XM_479913.1| Oryza sativa (japonica cultivar-group), mRNA Length = 177 Score = 91.7 bits (46), Expect = 1e-15 Identities = 55/58 (94%) Strand = Plus / Minus Query: 259 tctctgaagttgctcttgaacctcctgggcacatggcgcatgtacctcatcctcccgg 316 |||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| Sbjct: 131 tctctgaagttgctcttgaacctcctaggcacatgtcgcatgtacctcatccttccgg 74
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 91.7 bits (46), Expect = 1e-15 Identities = 55/58 (94%) Strand = Plus / Minus Query: 259 tctctgaagttgctcttgaacctcctgggcacatggcgcatgtacctcatcctcccgg 316 |||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| Sbjct: 1614723 tctctgaagttgctcttgaacctcctaggcacatgtcgcatgtacctcatccttccgg 1614666
>dbj|AP003886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1163_G08 Length = 150676 Score = 91.7 bits (46), Expect = 1e-15 Identities = 55/58 (94%) Strand = Plus / Minus Query: 259 tctctgaagttgctcttgaacctcctgggcacatggcgcatgtacctcatcctcccgg 316 |||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| Sbjct: 142211 tctctgaagttgctcttgaacctcctaggcacatgtcgcatgtacctcatccttccgg 142154
>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0582D05 Length = 150483 Score = 91.7 bits (46), Expect = 1e-15 Identities = 55/58 (94%) Strand = Plus / Minus Query: 259 tctctgaagttgctcttgaacctcctgggcacatggcgcatgtacctcatcctcccgg 316 |||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| Sbjct: 14223 tctctgaagttgctcttgaacctcctaggcacatgtcgcatgtacctcatccttccgg 14166
>ref|XM_463833.1| Oryza sativa (japonica cultivar-group), mRNA Length = 511 Score = 89.7 bits (45), Expect = 5e-15 Identities = 51/53 (96%) Strand = Plus / Minus Query: 259 tctctgaagttgctcttgaacctcctgggcacatggcgcatgtacctcatcct 311 |||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 295 tctctgaagttgctcttgaacctcctaggcacatgtcgcatgtacctcatcct 243
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 89.7 bits (45), Expect = 5e-15 Identities = 51/53 (96%) Strand = Plus / Minus Query: 259 tctctgaagttgctcttgaacctcctgggcacatggcgcatgtacctcatcct 311 |||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 635455 tctctgaagttgctcttgaacctcctaggcacatgtcgcatgtacctcatcct 635403 Score = 77.8 bits (39), Expect = 2e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 256 ccctctctgaagttgctcttgaacctcctgggcacatggcgcatgtacctcatcctccc 314 |||||||||||||| |||||||||||| ||||||| ||||| | ||||||||||||||| Sbjct: 34937896 ccctctctgaagttactcttgaacctcttgggcacgtggcgaaggtacctcatcctccc 34937838 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 36 aacattcaaaactgaaggattaacgtcca 64 ||||||||||||| |||||||||| |||| Sbjct: 34938342 aacattcaaaactcaaggattaacatcca 34938314
>dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0501G04 Length = 156603 Score = 89.7 bits (45), Expect = 5e-15 Identities = 51/53 (96%) Strand = Plus / Minus Query: 259 tctctgaagttgctcttgaacctcctgggcacatggcgcatgtacctcatcct 311 |||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 113508 tctctgaagttgctcttgaacctcctaggcacatgtcgcatgtacctcatcct 113456
>dbj|AK058280.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-C10, full insert sequence Length = 524 Score = 89.7 bits (45), Expect = 5e-15 Identities = 51/53 (96%) Strand = Plus / Minus Query: 259 tctctgaagttgctcttgaacctcctgggcacatggcgcatgtacctcatcct 311 |||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 308 tctctgaagttgctcttgaacctcctaggcacatgtcgcatgtacctcatcct 256
>dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1293_E04 Length = 118192 Score = 77.8 bits (39), Expect = 2e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 256 ccctctctgaagttgctcttgaacctcctgggcacatggcgcatgtacctcatcctccc 314 |||||||||||||| |||||||||||| ||||||| ||||| | ||||||||||||||| Sbjct: 97393 ccctctctgaagttactcttgaacctcttgggcacgtggcgaaggtacctcatcctccc 97335 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 36 aacattcaaaactgaaggattaacgtcca 64 ||||||||||||| |||||||||| |||| Sbjct: 97839 aacattcaaaactcaaggattaacatcca 97811
>gb|AY109376.1| Zea mays CL7359_1 mRNA sequence Length = 641 Score = 60.0 bits (30), Expect = 5e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 259 tctctgaagttgctcttgaacctcctgggcacatggcgcatgtacctcatcctcccgg 316 |||||||||||||||||||| | | ||||| |||||||||||||||||||| |||| Sbjct: 291 tctctgaagttgctcttgaaacggcgaggcacgtggcgcatgtacctcatccttccgg 348
>gb|AF188024.3| Homo sapiens chromosome 12 clone CTC-790L10 map 12p11.2, complete sequence Length = 111108 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 acatccgacacaattcaacat 40 ||||||||||||||||||||| Sbjct: 31278 acatccgacacaattcaacat 31258
>gb|AC022363.24| Homo sapiens 12 BAC RP11-1151B7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 114933 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 acatccgacacaattcaacat 40 ||||||||||||||||||||| Sbjct: 39385 acatccgacacaattcaacat 39365
>gb|AY275833.1| Homo sapiens polymerase (DNA directed), alpha (POLA) gene, complete cds Length = 304837 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 taaaaacatagagttccagta 137 ||||||||||||||||||||| Sbjct: 151768 taaaaacatagagttccagta 151788
>emb|CT485675.4| RP43-034D18, complete sequence Length = 163081 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 taaaaacatagagttccagta 137 ||||||||||||||||||||| Sbjct: 57002 taaaaacatagagttccagta 56982
>gb|AC079375.24| Homo sapiens X BAC RP11-757E1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172649 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 taaaaacatagagttccagta 137 ||||||||||||||||||||| Sbjct: 57184 taaaaacatagagttccagta 57164
>gb|AC132941.21| Mus musculus chromosome 18, clone RP23-163E22, complete sequence Length = 182073 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 gtgcggcctcggttccctct 261 |||||||||||||||||||| Sbjct: 16729 gtgcggcctcggttccctct 16710
>emb|CR955010.2| Medicago truncatula chromosome 5 clone mth2-8n12, COMPLETE SEQUENCE Length = 105005 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 142 gcaacaaaaaagctaattttgatg 165 ||||||||||| |||||||||||| Sbjct: 78369 gcaacaaaaaacctaattttgatg 78346
>gb|AY310768.1| Nicotiana benthamiana clone 7-369 unknown mRNA Length = 465 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 gcctcggttccctctctgaagttg 270 ||||||||||| |||||||||||| Sbjct: 279 gcctcggttccttctctgaagttg 256
>emb|AL035701.13|HS8B1 Human DNA sequence from clone RP1-8B1 on chromosome 6p11.2-21.1 Contains the ENPP5 gene for ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative function), the ENPP4 gene for ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative function) (NPP4, KIAA0879) and a novel gene, complete sequence Length = 126956 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 aaaaaagctaattttgatga 166 |||||||||||||||||||| Sbjct: 55935 aaaaaagctaattttgatga 55916
>gb|AC023716.4| Drosophila melanogaster X BAC RP98-45E21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169124 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gaaagcaacaaaaaagctaa 157 |||||||||||||||||||| Sbjct: 31633 gaaagcaacaaaaaagctaa 31652
>gb|AC023694.4| Drosophila melanogaster X BAC RP98-18B11 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170301 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gaaagcaacaaaaaagctaa 157 |||||||||||||||||||| Sbjct: 73808 gaaagcaacaaaaaagctaa 73827
>emb|BX470077.5| Zebrafish DNA sequence from clone CH211-136P17 in linkage group 5, complete sequence Length = 165851 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 acaattcaacattcaaaact 48 |||||||||||||||||||| Sbjct: 45586 acaattcaacattcaaaact 45567
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 acaattcaacattcaaaactgaag 52 |||||||||||| ||||||||||| Sbjct: 4286834 acaattcaacatgcaaaactgaag 4286857
>emb|AL606603.3|OSJN00040 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050N09, complete sequence Length = 127117 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 acaattcaacattcaaaactgaag 52 |||||||||||| ||||||||||| Sbjct: 34702 acaattcaacatgcaaaactgaag 34725
>gb|AC000356.1|HSAC000356 Human cosmid g1346a312, complete sequence Length = 39716 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 aagaggctcccttgctcctt 240 |||||||||||||||||||| Sbjct: 17712 aagaggctcccttgctcctt 17693
>gb|AE003449.2| Drosophila melanogaster chromosome X, section 33 of 74 of the complete sequence Length = 307201 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gaaagcaacaaaaaagctaa 157 |||||||||||||||||||| Sbjct: 263635 gaaagcaacaaaaaagctaa 263654
>emb|AL606654.3|OSJN00100 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0028M18, complete sequence Length = 132854 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 acaattcaacattcaaaactgaag 52 |||||||||||| ||||||||||| Sbjct: 129898 acaattcaacatgcaaaactgaag 129921
>gb|AC122462.5| Mus musculus BAC clone RP24-294G11 from 3, complete sequence Length = 160501 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 agagttccagtagaaagcaa 145 |||||||||||||||||||| Sbjct: 105907 agagttccagtagaaagcaa 105888 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,838,553 Number of Sequences: 3902068 Number of extensions: 2838553 Number of successful extensions: 54470 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54381 Number of HSP's gapped (non-prelim): 88 length of query: 323 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 301 effective length of database: 17,147,199,772 effective search space: 5161307131372 effective search space used: 5161307131372 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)