ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast23b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_710515.1| Candida albicans SC5314 hypothetical protein (C... 42 1.0
2ref|XM_710459.1| Candida albicans SC5314 hypothetical protein (C... 42 1.0
3emb|AL139081.21| Human DNA sequence from clone RP11-179A7 on chr... 42 1.0
4gb|AC096769.3| Homo sapiens BAC clone RP11-734O19 from 4, comple... 42 1.0
5gb|AF002134.1|AF002134 Candida albicans Sou2p (SOU2), Sou1p (SOU... 42 1.0
6gb|BT016062.1| Drosophila melanogaster LP13637 full insert cDNA 40 4.0
7gb|AC127422.4| Mus musculus BAC clone RP24-383K20 from chromosom... 40 4.0
8gb|AC004006.1| Homo sapiens PAC clone RP4-740B21 from 7, complet... 40 4.0
9gb|AC010028.8| Drosophila melanogaster 3L BAC RP98-1E20 (Roswell... 40 4.0
10ref|NM_079274.2| Drosophila melanogaster Heat shock gene 67Ba CG... 40 4.0
11dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
12gb|AE003552.4| Drosophila melanogaster chromosome 3L, section 33... 40 4.0
13gb|AC160119.3| Mus musculus BAC clone RP23-431F16 from chromosom... 40 4.0
14gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.0

>ref|XM_710515.1| Candida albicans SC5314 hypothetical protein (CaO19_10414), mRNA
          Length = 846

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 198 agctgcatgtactcatttagc 218
           |||||||||||||||||||||
Sbjct: 576 agctgcatgtactcatttagc 596



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>ref|XM_710459.1| Candida albicans SC5314 hypothetical protein (CaO19_2896), mRNA
          Length = 846

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 198 agctgcatgtactcatttagc 218
           |||||||||||||||||||||
Sbjct: 576 agctgcatgtactcatttagc 596



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>emb|AL139081.21| Human DNA sequence from clone RP11-179A7 on chromosome 13 Contains
             parts of 2 novel genes and the RFC3 gene for replication
             factor C (activator 1) 3, 38kDa, complete sequence
          Length = 185602

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    tctcagcagttagaaccaaaa 48
             |||||||||||||||||||||
Sbjct: 58227 tctcagcagttagaaccaaaa 58207



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>gb|AC096769.3| Homo sapiens BAC clone RP11-734O19 from 4, complete sequence
          Length = 70806

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 84   ctaccagctacctgcttcatg 104
            |||||||||||||||||||||
Sbjct: 2058 ctaccagctacctgcttcatg 2038



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>gb|AF002134.1|AF002134 Candida albicans Sou2p (SOU2), Sou1p (SOU1) and Vma8p (VMA8) genes,
            complete cds
          Length = 4293

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 198  agctgcatgtactcatttagc 218
            |||||||||||||||||||||
Sbjct: 2638 agctgcatgtactcatttagc 2658



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>gb|BT016062.1| Drosophila melanogaster LP13637 full insert cDNA
          Length = 1755

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 153  tacggctgccagttccttgccgcc 176
            ||||||||||||||||| ||||||
Sbjct: 1355 tacggctgccagttcctcgccgcc 1332



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>gb|AC127422.4| Mus musculus BAC clone RP24-383K20 from chromosome 9, complete sequence
          Length = 198803

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   aattatggccaatgactggg 126
             ||||||||||||||||||||
Sbjct: 70953 aattatggccaatgactggg 70934



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>gb|AC004006.1| Homo sapiens PAC clone RP4-740B21 from 7, complete sequence
          Length = 119453

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     tttttagaataaaaattctc 25
             ||||||||||||||||||||
Sbjct: 92604 tttttagaataaaaattctc 92585



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>gb|AC010028.8| Drosophila melanogaster 3L BAC RP98-1E20 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 187489

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 153   tacggctgccagttccttgccgcc 176
             ||||||||||||||||| ||||||
Sbjct: 77304 tacggctgccagttcctcgccgcc 77327



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>ref|NM_079274.2| Drosophila melanogaster Heat shock gene 67Ba CG4167-RA (Hsp67Ba),
            mRNA
          Length = 1338

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 153  tacggctgccagttccttgccgcc 176
            ||||||||||||||||| ||||||
Sbjct: 1260 tacggctgccagttcctcgccgcc 1237



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 43       ccaaaattcacgttttcgtg 62
                ||||||||||||||||||||
Sbjct: 12023900 ccaaaattcacgttttcgtg 12023881



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>gb|AE003552.4| Drosophila melanogaster chromosome 3L, section 33 of 83 of the complete
              sequence
          Length = 286770

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 153    tacggctgccagttccttgccgcc 176
              ||||||||||||||||| ||||||
Sbjct: 187901 tacggctgccagttcctcgccgcc 187924



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>gb|AC160119.3| Mus musculus BAC clone RP23-431F16 from chromosome 9, complete sequence
          Length = 190900

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   aattatggccaatgactggg 126
             ||||||||||||||||||||
Sbjct: 74601 aattatggccaatgactggg 74620



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 43       ccaaaattcacgttttcgtg 62
                ||||||||||||||||||||
Sbjct: 11953303 ccaaaattcacgttttcgtg 11953322


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,492,126
Number of Sequences: 3902068
Number of extensions: 2492126
Number of successful extensions: 44360
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44319
Number of HSP's gapped (non-prelim): 41
length of query: 303
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 281
effective length of database: 17,147,199,772
effective search space: 4818363135932
effective search space used: 4818363135932
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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