ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast22c10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC130602.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1122D01, complete sequence Length = 126532 Score = 216 bits (109), Expect = 4e-53 Identities = 211/245 (86%) Strand = Plus / Plus Query: 158 ggtgcatgtgacacgaactgcaggaattcgtcgtcggagaggaggcggcccatggtgtcc 217 |||||| | |||||| |||||| ||| |||| ||| ||| |||||| |||||||||| Sbjct: 14493 ggtgcacgcgacacgtactgcaagaactcgtggtcaccgagcaggcgggccatggtgtcg 14552 Query: 218 ggggcgaggcacacctccacgtccacactgccatccccggcttgaccggggaacgccgac 277 || |||||||| | ||| ||||| || ||||| ||||| || || | |||||||||||| Sbjct: 14553 ggcgcgaggcaaaactcgacgtcgacgctgccgtccccagcctggctcgggaacgccgac 14612 Query: 278 atcttgccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccg 337 |||||||||||||||||||| || || || ||||||||||| | |||||||||||| ||| Sbjct: 14613 atcttgccgtcgaacttgttggcgcgcccgctccgcacggcgatcgccctgccccacccg 14672 Query: 338 aagtcgttgccgtcgtacatcgggaaccgtggcgagctccccatggtgagcgccgcgccg 397 |||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||| Sbjct: 14673 aagtcgttgccgtcgtacatagggaaccggggcgagctccccatcgtgagcgccgcgccg 14732 Query: 398 tcggg 402 ||||| Sbjct: 14733 tcggg 14737
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 216 bits (109), Expect = 4e-53 Identities = 211/245 (86%) Strand = Plus / Plus Query: 158 ggtgcatgtgacacgaactgcaggaattcgtcgtcggagaggaggcggcccatggtgtcc 217 |||||| | |||||| |||||| ||| |||| ||| ||| |||||| |||||||||| Sbjct: 21895279 ggtgcacgcgacacgtactgcaagaactcgtggtcaccgagcaggcgggccatggtgtcg 21895338 Query: 218 ggggcgaggcacacctccacgtccacactgccatccccggcttgaccggggaacgccgac 277 || |||||||| | ||| ||||| || ||||| ||||| || || | |||||||||||| Sbjct: 21895339 ggcgcgaggcaaaactcgacgtcgacgctgccgtccccagcctggctcgggaacgccgac 21895398 Query: 278 atcttgccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccg 337 |||||||||||||||||||| || || || ||||||||||| | |||||||||||| ||| Sbjct: 21895399 atcttgccgtcgaacttgttggcgcgcccgctccgcacggcgatcgccctgccccacccg 21895458 Query: 338 aagtcgttgccgtcgtacatcgggaaccgtggcgagctccccatggtgagcgccgcgccg 397 |||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||| Sbjct: 21895459 aagtcgttgccgtcgtacatagggaaccggggcgagctccccatcgtgagcgccgcgccg 21895518 Query: 398 tcggg 402 ||||| Sbjct: 21895519 tcggg 21895523
>dbj|AK107567.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-C10, full insert sequence Length = 1886 Score = 216 bits (109), Expect = 4e-53 Identities = 211/245 (86%) Strand = Plus / Minus Query: 158 ggtgcatgtgacacgaactgcaggaattcgtcgtcggagaggaggcggcccatggtgtcc 217 |||||| | |||||| |||||| ||| |||| ||| ||| |||||| |||||||||| Sbjct: 1539 ggtgcacgcgacacgtactgcaagaactcgtggtcaccgagcaggcgggccatggtgtcg 1480 Query: 218 ggggcgaggcacacctccacgtccacactgccatccccggcttgaccggggaacgccgac 277 || |||||||| | ||| ||||| || ||||| ||||| || || | |||||||||||| Sbjct: 1479 ggcgcgaggcaaaactcgacgtcgacgctgccgtccccagcctggctcgggaacgccgac 1420 Query: 278 atcttgccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccg 337 |||||||||||||||||||| || || || ||||||||||| | |||||||||||| ||| Sbjct: 1419 atcttgccgtcgaacttgttggcgcgcccgctccgcacggcgatcgccctgccccacccg 1360 Query: 338 aagtcgttgccgtcgtacatcgggaaccgtggcgagctccccatggtgagcgccgcgccg 397 |||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||| Sbjct: 1359 aagtcgttgccgtcgtacatagggaaccggggcgagctccccatcgtgagcgccgcgccg 1300 Query: 398 tcggg 402 ||||| Sbjct: 1299 tcggg 1295
>dbj|AK072009.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104O15, full insert sequence Length = 1883 Score = 216 bits (109), Expect = 4e-53 Identities = 211/245 (86%) Strand = Plus / Minus Query: 158 ggtgcatgtgacacgaactgcaggaattcgtcgtcggagaggaggcggcccatggtgtcc 217 |||||| | |||||| |||||| ||| |||| ||| ||| |||||| |||||||||| Sbjct: 1540 ggtgcacgcgacacgtactgcaagaactcgtggtcaccgagcaggcgggccatggtgtcg 1481 Query: 218 ggggcgaggcacacctccacgtccacactgccatccccggcttgaccggggaacgccgac 277 || |||||||| | ||| ||||| || ||||| ||||| || || | |||||||||||| Sbjct: 1480 ggcgcgaggcaaaactcgacgtcgacgctgccgtccccagcctggctcgggaacgccgac 1421 Query: 278 atcttgccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccg 337 |||||||||||||||||||| || || || ||||||||||| | |||||||||||| ||| Sbjct: 1420 atcttgccgtcgaacttgttggcgcgcccgctccgcacggcgatcgccctgccccacccg 1361 Query: 338 aagtcgttgccgtcgtacatcgggaaccgtggcgagctccccatggtgagcgccgcgccg 397 |||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||| Sbjct: 1360 aagtcgttgccgtcgtacatagggaaccggggcgagctccccatcgtgagcgccgcgccg 1301 Query: 398 tcggg 402 ||||| Sbjct: 1300 tcggg 1296
>ref|NM_190656.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2139 Score = 137 bits (69), Expect = 3e-29 Identities = 162/193 (83%) Strand = Plus / Minus Query: 207 ccatggtgtccggggcgaggcacacctccacgtccacactgccatccccggcttgaccgg 266 |||||||||| ||||||||||||||||| | |||||| ||||| |||||||| | | | Sbjct: 1408 ccatggtgtcgggggcgaggcacacctcgatgtccacgctgccgtccccggcgcgggcag 1349 Query: 267 ggaacgccgacatcttgccgtcgaacttgtttgctcggccactccgcacggccaccgccc 326 ||||||||||||||||||| ||||||||||| || ||||| |||||||| || | | | Sbjct: 1348 ggaacgccgacatcttgccatcgaacttgttggcgcggccgctccgcaccgcgagggggc 1289 Query: 327 tgccccaaccgaagtcgttgccgtcgtacatcgggaaccgtggcgagctccccatggtga 386 |||||| |||||||||||||| || ||||| |||||||| |||||||||||| |||| Sbjct: 1288 ggccccacccgaagtcgttgccctcatacatggggaaccggttcgagctccccatcgtga 1229 Query: 387 gcgccgcgccgtc 399 | |||||||||| Sbjct: 1228 tcaccgcgccgtc 1216
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 137 bits (69), Expect = 3e-29 Identities = 162/193 (83%) Strand = Plus / Minus Query: 207 ccatggtgtccggggcgaggcacacctccacgtccacactgccatccccggcttgaccgg 266 |||||||||| ||||||||||||||||| | |||||| ||||| |||||||| | | | Sbjct: 36789690 ccatggtgtcgggggcgaggcacacctcgatgtccacgctgccgtccccggcgcgggcag 36789631 Query: 267 ggaacgccgacatcttgccgtcgaacttgtttgctcggccactccgcacggccaccgccc 326 ||||||||||||||||||| ||||||||||| || ||||| |||||||| || | | | Sbjct: 36789630 ggaacgccgacatcttgccatcgaacttgttggcgcggccgctccgcaccgcgagggggc 36789571 Query: 327 tgccccaaccgaagtcgttgccgtcgtacatcgggaaccgtggcgagctccccatggtga 386 |||||| |||||||||||||| || ||||| |||||||| |||||||||||| |||| Sbjct: 36789570 ggccccacccgaagtcgttgccctcatacatggggaaccggttcgagctccccatcgtga 36789511 Query: 387 gcgccgcgccgtc 399 | |||||||||| Sbjct: 36789510 tcaccgcgccgtc 36789498 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 378 ccatggtgagcgccgcgccgt 398 ||||||||||||||||||||| Sbjct: 14496296 ccatggtgagcgccgcgccgt 14496316
>dbj|AP003442.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1096A10 Length = 150976 Score = 137 bits (69), Expect = 3e-29 Identities = 162/193 (83%) Strand = Plus / Minus Query: 207 ccatggtgtccggggcgaggcacacctccacgtccacactgccatccccggcttgaccgg 266 |||||||||| ||||||||||||||||| | |||||| ||||| |||||||| | | | Sbjct: 5268 ccatggtgtcgggggcgaggcacacctcgatgtccacgctgccgtccccggcgcgggcag 5209 Query: 267 ggaacgccgacatcttgccgtcgaacttgtttgctcggccactccgcacggccaccgccc 326 ||||||||||||||||||| ||||||||||| || ||||| |||||||| || | | | Sbjct: 5208 ggaacgccgacatcttgccatcgaacttgttggcgcggccgctccgcaccgcgagggggc 5149 Query: 327 tgccccaaccgaagtcgttgccgtcgtacatcgggaaccgtggcgagctccccatggtga 386 |||||| |||||||||||||| || ||||| |||||||| |||||||||||| |||| Sbjct: 5148 ggccccacccgaagtcgttgccctcatacatggggaaccggttcgagctccccatcgtga 5089 Query: 387 gcgccgcgccgtc 399 | |||||||||| Sbjct: 5088 tcaccgcgccgtc 5076
>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529E05 Length = 134982 Score = 137 bits (69), Expect = 3e-29 Identities = 162/193 (83%) Strand = Plus / Minus Query: 207 ccatggtgtccggggcgaggcacacctccacgtccacactgccatccccggcttgaccgg 266 |||||||||| ||||||||||||||||| | |||||| ||||| |||||||| | | | Sbjct: 116005 ccatggtgtcgggggcgaggcacacctcgatgtccacgctgccgtccccggcgcgggcag 115946 Query: 267 ggaacgccgacatcttgccgtcgaacttgtttgctcggccactccgcacggccaccgccc 326 ||||||||||||||||||| ||||||||||| || ||||| |||||||| || | | | Sbjct: 115945 ggaacgccgacatcttgccatcgaacttgttggcgcggccgctccgcaccgcgagggggc 115886 Query: 327 tgccccaaccgaagtcgttgccgtcgtacatcgggaaccgtggcgagctccccatggtga 386 |||||| |||||||||||||| || ||||| |||||||| |||||||||||| |||| Sbjct: 115885 ggccccacccgaagtcgttgccctcatacatggggaaccggttcgagctccccatcgtga 115826 Query: 387 gcgccgcgccgtc 399 | |||||||||| Sbjct: 115825 tcaccgcgccgtc 115813
>dbj|AK070440.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050J22, full insert sequence Length = 2097 Score = 137 bits (69), Expect = 3e-29 Identities = 162/193 (83%) Strand = Plus / Minus Query: 207 ccatggtgtccggggcgaggcacacctccacgtccacactgccatccccggcttgaccgg 266 |||||||||| ||||||||||||||||| | |||||| ||||| |||||||| | | | Sbjct: 1543 ccatggtgtcgggggcgaggcacacctcgatgtccacgctgccgtccccggcgcgggcag 1484 Query: 267 ggaacgccgacatcttgccgtcgaacttgtttgctcggccactccgcacggccaccgccc 326 ||||||||||||||||||| ||||||||||| || ||||| |||||||| || | | | Sbjct: 1483 ggaacgccgacatcttgccatcgaacttgttggcgcggccgctccgcaccgcgagggggc 1424 Query: 327 tgccccaaccgaagtcgttgccgtcgtacatcgggaaccgtggcgagctccccatggtga 386 |||||| |||||||||||||| || ||||| |||||||| |||||||||||| |||| Sbjct: 1423 ggccccacccgaagtcgttgccctcatacatggggaaccggttcgagctccccatcgtga 1364 Query: 387 gcgccgcgccgtc 399 | |||||||||| Sbjct: 1363 tcaccgcgccgtc 1351
>ref|XM_479748.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1625 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 284 ccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccgaagtcg 343 |||||||||||||| || | ||| |||||||||| | ||| ||| ||||| ||||||||| Sbjct: 1291 ccgtcgaacttgttcgcgccgccgctccgcacggtcgccggcctcccccacccgaagtcg 1232 Query: 344 ttgccg 349 |||||| Sbjct: 1231 ttgccg 1226
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 284 ccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccgaagtcg 343 |||||||||||||| || | ||| |||||||||| | ||| ||| ||||| ||||||||| Sbjct: 649758 ccgtcgaacttgttcgcgccgccgctccgcacggtcgccggcctcccccacccgaagtcg 649817 Query: 344 ttgccg 349 |||||| Sbjct: 649818 ttgccg 649823 Score = 60.0 bits (30), Expect = 6e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 280 cttgccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccgaa 339 |||||||||||||||||| || | ||| ||||||||| | ||| ||| ||||| ||||| Sbjct: 646685 cttgccgtcgaacttgttcgcgccgccgctccgcacgctcgccggcctcccccacccgaa 646744 Query: 340 gtcgttgccg 349 |||||||||| Sbjct: 646745 gtcgttgccg 646754 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 284 ccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccgaagtcg 343 |||||||||||||| || | ||| ||||||||| ||||| ||| ||||| ||||||||| Sbjct: 604473 ccgtcgaacttgttcgcgccgccgctccgcacgctcaccggcctcccccacccgaagtcg 604532 Query: 344 ttgcc 348 ||||| Sbjct: 604533 ttgcc 604537 Score = 44.1 bits (22), Expect = 0.34 Identities = 37/42 (88%) Strand = Plus / Plus Query: 308 ctccgcacggccaccgccctgccccaaccgaagtcgttgccg 349 |||| ||| ||||||| ||| ||||| ||||||||||||||| Sbjct: 590371 ctcctcaccgccaccggccttccccacccgaagtcgttgccg 590412 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 186 cgtcgtcggagaggaggcggc 206 ||||||||||||||||||||| Sbjct: 25437466 cgtcgtcggagaggaggcggc 25437446 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 308 ctccgcacggccaccgccctgccccaaccgaagtcgttgcc 348 ||||| ||| |||||| ||| ||||| |||||||||||||| Sbjct: 626591 ctccggacgcccaccggcctcccccacccgaagtcgttgcc 626631
>dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498H04 Length = 151046 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 284 ccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccgaagtcg 343 |||||||||||||| || | ||| |||||||||| | ||| ||| ||||| ||||||||| Sbjct: 77136 ccgtcgaacttgttcgcgccgccgctccgcacggtcgccggcctcccccacccgaagtcg 77195 Query: 344 ttgccg 349 |||||| Sbjct: 77196 ttgccg 77201 Score = 60.0 bits (30), Expect = 6e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 280 cttgccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccgaa 339 |||||||||||||||||| || | ||| ||||||||| | ||| ||| ||||| ||||| Sbjct: 74063 cttgccgtcgaacttgttcgcgccgccgctccgcacgctcgccggcctcccccacccgaa 74122 Query: 340 gtcgttgccg 349 |||||||||| Sbjct: 74123 gtcgttgccg 74132 Score = 58.0 bits (29), Expect = 2e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 284 ccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccgaagtcg 343 |||||||||||||| || | ||| ||||||||| ||||| ||| ||||| ||||||||| Sbjct: 31851 ccgtcgaacttgttcgcgccgccgctccgcacgctcaccggcctcccccacccgaagtcg 31910 Query: 344 ttgcc 348 ||||| Sbjct: 31911 ttgcc 31915 Score = 44.1 bits (22), Expect = 0.34 Identities = 37/42 (88%) Strand = Plus / Plus Query: 308 ctccgcacggccaccgccctgccccaaccgaagtcgttgccg 349 |||| ||| ||||||| ||| ||||| ||||||||||||||| Sbjct: 17749 ctcctcaccgccaccggccttccccacccgaagtcgttgccg 17790 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 308 ctccgcacggccaccgccctgccccaaccgaagtcgttgcc 348 ||||| ||| |||||| ||| ||||| |||||||||||||| Sbjct: 53969 ctccggacgcccaccggcctcccccacccgaagtcgttgcc 54009
>dbj|AK070381.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054J24, full insert sequence Length = 1624 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 284 ccgtcgaacttgtttgctcggccactccgcacggccaccgccctgccccaaccgaagtcg 343 |||||||||||||| || | ||| |||||||||| | ||| ||| ||||| ||||||||| Sbjct: 1289 ccgtcgaacttgttcgcgccgccgctccgcacggtcgccggcctcccccacccgaagtcg 1230 Query: 344 ttgccg 349 |||||| Sbjct: 1229 ttgccg 1224
>ref|XM_479739.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1835 Score = 44.1 bits (22), Expect = 0.34 Identities = 37/42 (88%) Strand = Plus / Minus Query: 308 ctccgcacggccaccgccctgccccaaccgaagtcgttgccg 349 |||| ||| ||||||| ||| ||||| ||||||||||||||| Sbjct: 1321 ctcctcaccgccaccggccttccccacccgaagtcgttgccg 1280
>ref|XM_472181.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1338 Score = 44.1 bits (22), Expect = 0.34 Identities = 37/42 (88%) Strand = Plus / Minus Query: 308 ctccgcacggccaccgccctgccccaaccgaagtcgttgccg 349 ||||| ||| |||||| ||| ||||| ||||||||||||||| Sbjct: 1172 ctccggacgcccaccggcctcccccacccgaagtcgttgccg 1131
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.34 Identities = 37/42 (88%) Strand = Plus / Plus Query: 308 ctccgcacggccaccgccctgccccaaccgaagtcgttgccg 349 ||||| ||| |||||| ||| ||||| ||||||||||||||| Sbjct: 18268405 ctccggacgcccaccggcctcccccacccgaagtcgttgccg 18268446
>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0007D08 Length = 183142 Score = 44.1 bits (22), Expect = 0.34 Identities = 37/42 (88%) Strand = Plus / Plus Query: 308 ctccgcacggccaccgccctgccccaaccgaagtcgttgccg 349 |||| ||| ||||||| ||| ||||| ||||||||||||||| Sbjct: 180331 ctcctcaccgccaccggccttccccacccgaagtcgttgccg 180372
>dbj|AK110905.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-B07, full insert sequence Length = 1835 Score = 44.1 bits (22), Expect = 0.34 Identities = 37/42 (88%) Strand = Plus / Minus Query: 308 ctccgcacggccaccgccctgccccaaccgaagtcgttgccg 349 |||| ||| ||||||| ||| ||||| ||||||||||||||| Sbjct: 1321 ctcctcaccgccaccggccttccccacccgaagtcgttgccg 1280
>emb|AL662979.3|OSJN00179 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0069D17, complete sequence Length = 147111 Score = 44.1 bits (22), Expect = 0.34 Identities = 37/42 (88%) Strand = Plus / Plus Query: 308 ctccgcacggccaccgccctgccccaaccgaagtcgttgccg 349 ||||| ||| |||||| ||| ||||| ||||||||||||||| Sbjct: 104079 ctccggacgcccaccggcctcccccacccgaagtcgttgccg 104120
>ref|XM_483321.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1488 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 186 cgtcgtcggagaggaggcggc 206 ||||||||||||||||||||| Sbjct: 171 cgtcgtcggagaggaggcggc 151
>ref|XM_507293.1| PREDICTED Oryza sativa (japonica cultivar-group), P0711H09.20 mRNA Length = 1519 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 186 cgtcgtcggagaggaggcggc 206 ||||||||||||||||||||| Sbjct: 195 cgtcgtcggagaggaggcggc 175
>ref|XM_479745.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1395 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 308 ctccgcacggccaccgccctgccccaaccgaagtcgttgcc 348 ||||| ||| |||||| ||| ||||| |||||||||||||| Sbjct: 1232 ctccggacgcccaccggcctcccccacccgaagtcgttgcc 1192
>dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0514H03 Length = 167230 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 378 ccatggtgagcgccgcgccgt 398 ||||||||||||||||||||| Sbjct: 55609 ccatggtgagcgccgcgccgt 55629
>dbj|AP004765.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0711H09 Length = 185858 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 186 cgtcgtcggagaggaggcggc 206 ||||||||||||||||||||| Sbjct: 68782 cgtcgtcggagaggaggcggc 68762
>dbj|AK104896.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-A11, full insert sequence Length = 1488 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 186 cgtcgtcggagaggaggcggc 206 ||||||||||||||||||||| Sbjct: 171 cgtcgtcggagaggaggcggc 151
>dbj|AK068851.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162F01, full insert sequence Length = 1518 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 186 cgtcgtcggagaggaggcggc 206 ||||||||||||||||||||| Sbjct: 194 cgtcgtcggagaggaggcggc 174
>ref|NM_197365.1| Oryza sativa (japonica cultivar-group) putative gamma-lyase (OSJNBa0076F20.6), mRNA Length = 1656 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 192 cggagaggaggcggcccatggtgtccgg 219 |||||| |||||||| |||||||||||| Sbjct: 259 cggagaagaggcggcgcatggtgtccgg 232
>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence Length = 165394 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 192 cggagaggaggcggcccatggtgtccgg 219 |||||| |||||||| |||||||||||| Sbjct: 113005 cggagaagaggcggcgcatggtgtccgg 113032
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 192 cggagaggaggcggcccatggtgtccgg 219 |||||| |||||||| |||||||||||| Sbjct: 19485139 cggagaagaggcggcgcatggtgtccgg 19485166
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 cctccacgtccacactgcca 250 |||||||||||||||||||| Sbjct: 495862 cctccacgtccacactgcca 495843
>dbj|AK105942.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C01, full insert sequence Length = 1645 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 192 cggagaggaggcggcccatggtgtccgg 219 |||||| |||||||| |||||||||||| Sbjct: 306 cggagaagaggcggcgcatggtgtccgg 279
>dbj|AK100465.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092C09, full insert sequence Length = 1704 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 192 cggagaggaggcggcccatggtgtccgg 219 |||||| |||||||| |||||||||||| Sbjct: 308 cggagaagaggcggcgcatggtgtccgg 281
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 192 cggagaggaggcggcccatggtgtccgg 219 |||||| |||||||| |||||||||||| Sbjct: 19496415 cggagaagaggcggcgcatggtgtccgg 19496442 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,171,694 Number of Sequences: 3902068 Number of extensions: 2171694 Number of successful extensions: 41300 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41015 Number of HSP's gapped (non-prelim): 280 length of query: 402 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 380 effective length of database: 17,147,199,772 effective search space: 6515935913360 effective search space used: 6515935913360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
