ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast22b12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome... 204 1e-49
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 204 1e-49
3dbj|AK070554.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 1e-49
4dbj|AK122177.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 5e-40
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
6dbj|AP005886.3| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
7dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
8ref|NM_190069.1| Oryza sativa (japonica cultivar-group), predic... 50 0.005
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
10dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
11dbj|AK108620.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
12gb|DQ485150.1| Burkholderia cepacia MPS gene, partial sequence 46 0.082
13gb|AF185273.1|AF185273 Burkholderia cepacia unknown sequence 46 0.082
14gb|AC012049.8| Homo sapiens chromosome 10 clone RP11-76F22, comp... 44 0.32
15gb|AC022537.8| Homo sapiens chromosome 10 clone RP11-40C11, comp... 44 0.32
16ref|XM_550168.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.3
17ref|NM_001031296.1| Gallus gallus splicing factor, arginine/seri... 42 1.3
18gb|AC145433.2| Pan troglodytes BAC clone RP43-43I4 from 7, compl... 42 1.3
19gb|AC142317.1| Pan troglodytes BAC clone RP43-52L16 from 7, comp... 42 1.3
20emb|AJ720592.1| Gallus gallus mRNA for hypothetical protein, clo... 42 1.3
21gb|AE005847.1| Caulobacter crescentus CB15 section 173 of 359 of... 42 1.3
22emb|CR389009.1| Gallus gallus finished cDNA, clone ChEST177c22 42 1.3
23dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
24gb|AC010002.6|AC010002 Homo sapiens chromosome 7 clone RP11-194N... 42 1.3
25dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
26dbj|AP002522.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
27dbj|AK120703.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
28gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 1.3
29ref|XM_550169.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.0
30ref|XM_464952.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.0
31ref|NM_186687.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.0
32gb|AC146701.9| Mus musculus chromosome 10, clone RP24-142C15, co... 40 5.0
33gb|AC132461.3| Mus musculus chromosome 5 clone RP23-33C9, comple... 40 5.0
34emb|CT009746.6| Zebrafish DNA sequence from clone CH73-236M19 in... 40 5.0
35gb|AC111096.15| Mus musculus chromosome 3, clone RP23-174B18, co... 40 5.0
36emb|AL117328.5|HSA494O16 Human DNA sequence from clone RP11-494O... 40 5.0
37dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
38dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
39dbj|D90334.2| Homo sapiens HGF gene for hepatocyte growth factor... 40 5.0
40gb|AY246560.1| Homo sapiens hepatocyte growth factor (hepapoieti... 40 5.0
41dbj|AP005694.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
42dbj|AP004111.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
43dbj|AP005246.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
44gb|AC004960.1|AC004960 Homo sapiens PAC clone RP5-1098B1 from 7q... 40 5.0
45gb|AC112685.16| Mus musculus chromosome 3, clone RP23-340E10, co... 40 5.0
46gb|AC170751.2| Mus musculus BAC clone CH25-484K21 from chromosom... 40 5.0
47emb|AL808021.12| Mouse DNA sequence from clone RP23-349B15 on ch... 40 5.0
48emb|AL626784.11| Mouse DNA sequence from clone RP23-392J14 on ch... 40 5.0 
>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0006J12, complete sequence
          Length = 157069

 Score =  204 bits (103), Expect = 1e-49
 Identities = 181/207 (87%)
 Strand = Plus / Minus

                                                                         
Query: 172   aggcggaagttgttgcaggtcgtctgccggaacagcagggaggagctgaacccgagcctc 231
             ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |
Sbjct: 89775 aggcgaaagttgttgcaggtcgtttgccggaacaggagggaggagctgaaccccagccgc 89716

                                                                         
Query: 232   gcccgctgcaaatcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccacc 291
             |  | |  ||  || |||||||||||||||||||||||| |||| || ||||||||||||
Sbjct: 89715 gatcccaccaggtcaaactccagcaggttgtcctccatcatgtgaccgccgatcaccacc 89656

                                                                         
Query: 292   gacgtccgcggggccgcgccgccgtccaccacgccgaggcagagcgcgccgcccttggcg 351
             |||||   ||  ||| |||||||||||||||| ||||||||||| ||||||||||||| |
Sbjct: 89655 gacgtttccgacgccacgccgccgtccaccacaccgaggcagagagcgccgcccttggtg 89596

                                        
Query: 352   gccaccatcgagttggccccgaacacc 378
             |||||||||||||| ||||||||||||
Sbjct: 89595 gccaccatcgagttcgccccgaacacc 89569



 Score =  172 bits (87), Expect = 5e-40
 Identities = 120/131 (91%)
 Strand = Plus / Minus

                                                                          
Query: 247    aactccagcaggttgtcctccatcgtgtgccccccgatcaccaccgacgtccgcggggcc 306
              |||||||||||||||||||||||| ||||||| |||||||| ||||||||| ||||  ||
Sbjct: 103640 aactccagcaggttgtcctccatcatgtgcccaccgatcacaaccgacgtctgcggctcc 103581

                                                                          
Query: 307    gcgccgccgtccaccacgccgaggcagagcgcgccgcccttggcggccaccatcgagttg 366
              | |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| 
Sbjct: 103580 gtgccggcgtccaccacgccgaggcagagcgcgcctcccttggtggccaccatcgagttc 103521

                         
Query: 367    gccccgaacac 377
              |||||||||||
Sbjct: 103520 gccccgaacac 103510



 Score =  170 bits (86), Expect = 2e-39
 Identities = 175/204 (85%), Gaps = 3/204 (1%)
 Strand = Plus / Minus

                                                                         
Query: 172   aggcggaagttgttgcaggtcgtctgccggaacagcagggaggagctgaacccgagcctc 231
             ||||| ||||||||||||||||||||||| ||| | ||| |||||||||| || |||| |
Sbjct: 92274 aggcgaaagttgttgcaggtcgtctgccgcaacgggaggtaggagctgaaacccagccgc 92215

                                                                         
Query: 232   gcccgctgcaaatcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccacc 291
             | || || ||  || |||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 92214 gacccctccaggtcaaactccagcaggttgtcctccatcatgtgcccgccgatcaccacc 92155

                                                                         
Query: 292   gacgtccg---cggggccgcgccgccgtccaccacgccgaggcagagcgcgccgcccttg 348
             || | | |   | | || | |||||||||||||||||| |||||||||||||||||||||
Sbjct: 92154 gatgacggatacagcgcggggccgccgtccaccacgccaaggcagagcgcgccgcccttg 92095

                                     
Query: 349   gcggccaccatcgagttggccccg 372
             |||| |||||||||||| ||||||
Sbjct: 92094 gcgggcaccatcgagtttgccccg 92071



 Score =  155 bits (78), Expect = 1e-34
 Identities = 177/210 (84%)
 Strand = Plus / Minus

                                                                         
Query: 169   ccaaggcggaagttgttgcaggtcgtctgccggaacagcagggaggagctgaacccgagc 228
             |||||| | ||| ||||||||||||||||| | ||| | ||| ||||| |||| || |||
Sbjct: 96657 ccaaggtgaaagctgttgcaggtcgtctgcagcaacgggaggtaggaggtgaaacccagc 96598

                                                                         
Query: 229   ctcgcccgctgcaaatcgaactccagcaggttgtcctccatcgtgtgccccccgatcacc 288
             |  | || || ||  ||||||||||||||||||||||||||| |||| || |||||||||
Sbjct: 96597 cgtgacccctccaggtcgaactccagcaggttgtcctccatcatgtgtccgccgatcacc 96538

                                                                         
Query: 289   accgacgtccgcggggccgcgccgccgtccaccacgccgaggcagagcgcgccgcccttg 348
             |||||||||  ||||||  |||| || ||||| ||||||| ||||||||||||| |||||
Sbjct: 96537 accgacgtctccggggctacgcctccatccacaacgccgaagcagagcgcgccgtccttg 96478

                                           
Query: 349   gcggccaccatcgagttggccccgaacacc 378
             | ||||||||| ||||| ||||||||||||
Sbjct: 96477 gtggccaccatagagttcgccccgaacacc 96448
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  204 bits (103), Expect = 1e-49
 Identities = 181/207 (87%)
 Strand = Plus / Minus

                                                                            
Query: 172      aggcggaagttgttgcaggtcgtctgccggaacagcagggaggagctgaacccgagcctc 231
                ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |
Sbjct: 19489063 aggcgaaagttgttgcaggtcgtttgccggaacaggagggaggagctgaaccccagccgc 19489004

                                                                            
Query: 232      gcccgctgcaaatcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccacc 291
                |  | |  ||  || |||||||||||||||||||||||| |||| || ||||||||||||
Sbjct: 19489003 gatcccaccaggtcaaactccagcaggttgtcctccatcatgtgaccgccgatcaccacc 19488944

                                                                            
Query: 292      gacgtccgcggggccgcgccgccgtccaccacgccgaggcagagcgcgccgcccttggcg 351
                |||||   ||  ||| |||||||||||||||| ||||||||||| ||||||||||||| |
Sbjct: 19488943 gacgtttccgacgccacgccgccgtccaccacaccgaggcagagagcgccgcccttggtg 19488884

                                           
Query: 352      gccaccatcgagttggccccgaacacc 378
                |||||||||||||| ||||||||||||
Sbjct: 19488883 gccaccatcgagttcgccccgaacacc 19488857



 Score =  172 bits (87), Expect = 5e-40
 Identities = 120/131 (91%)
 Strand = Plus / Minus

                                                                            
Query: 247      aactccagcaggttgtcctccatcgtgtgccccccgatcaccaccgacgtccgcggggcc 306
                |||||||||||||||||||||||| ||||||| |||||||| ||||||||| ||||  ||
Sbjct: 19502928 aactccagcaggttgtcctccatcatgtgcccaccgatcacaaccgacgtctgcggctcc 19502869

                                                                            
Query: 307      gcgccgccgtccaccacgccgaggcagagcgcgccgcccttggcggccaccatcgagttg 366
                | |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| 
Sbjct: 19502868 gtgccggcgtccaccacgccgaggcagagcgcgcctcccttggtggccaccatcgagttc 19502809

                           
Query: 367      gccccgaacac 377
                |||||||||||
Sbjct: 19502808 gccccgaacac 19502798



 Score =  170 bits (86), Expect = 2e-39
 Identities = 175/204 (85%), Gaps = 3/204 (1%)
 Strand = Plus / Minus

                                                                            
Query: 172      aggcggaagttgttgcaggtcgtctgccggaacagcagggaggagctgaacccgagcctc 231
                ||||| ||||||||||||||||||||||| ||| | ||| |||||||||| || |||| |
Sbjct: 19491562 aggcgaaagttgttgcaggtcgtctgccgcaacgggaggtaggagctgaaacccagccgc 19491503

                                                                            
Query: 232      gcccgctgcaaatcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccacc 291
                | || || ||  || |||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 19491502 gacccctccaggtcaaactccagcaggttgtcctccatcatgtgcccgccgatcaccacc 19491443

                                                                            
Query: 292      gacgtccg---cggggccgcgccgccgtccaccacgccgaggcagagcgcgccgcccttg 348
                || | | |   | | || | |||||||||||||||||| |||||||||||||||||||||
Sbjct: 19491442 gatgacggatacagcgcggggccgccgtccaccacgccaaggcagagcgcgccgcccttg 19491383

                                        
Query: 349      gcggccaccatcgagttggccccg 372
                |||| |||||||||||| ||||||
Sbjct: 19491382 gcgggcaccatcgagtttgccccg 19491359



 Score =  155 bits (78), Expect = 1e-34
 Identities = 177/210 (84%)
 Strand = Plus / Minus

                                                                            
Query: 169      ccaaggcggaagttgttgcaggtcgtctgccggaacagcagggaggagctgaacccgagc 228
                |||||| | ||| ||||||||||||||||| | ||| | ||| ||||| |||| || |||
Sbjct: 19495945 ccaaggtgaaagctgttgcaggtcgtctgcagcaacgggaggtaggaggtgaaacccagc 19495886

                                                                            
Query: 229      ctcgcccgctgcaaatcgaactccagcaggttgtcctccatcgtgtgccccccgatcacc 288
                |  | || || ||  ||||||||||||||||||||||||||| |||| || |||||||||
Sbjct: 19495885 cgtgacccctccaggtcgaactccagcaggttgtcctccatcatgtgtccgccgatcacc 19495826

                                                                            
Query: 289      accgacgtccgcggggccgcgccgccgtccaccacgccgaggcagagcgcgccgcccttg 348
                |||||||||  ||||||  |||| || ||||| ||||||| ||||||||||||| |||||
Sbjct: 19495825 accgacgtctccggggctacgcctccatccacaacgccgaagcagagcgcgccgtccttg 19495766

                                              
Query: 349      gcggccaccatcgagttggccccgaacacc 378
                | ||||||||| ||||| ||||||||||||
Sbjct: 19495765 gtggccaccatagagttcgccccgaacacc 19495736
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>dbj|AK070554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061A08, full
            insert sequence
          Length = 1474

 Score =  204 bits (103), Expect = 1e-49
 Identities = 181/207 (87%)
 Strand = Plus / Minus

                                                                        
Query: 172  aggcggaagttgttgcaggtcgtctgccggaacagcagggaggagctgaacccgagcctc 231
            ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |
Sbjct: 1343 aggcgaaagttgttgcaggtcgtttgccggaacaggagggaggagctgaaccccagccgc 1284

                                                                        
Query: 232  gcccgctgcaaatcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccacc 291
            |  | |  ||  || |||||||||||||||||||||||| |||| || ||||||||||||
Sbjct: 1283 gatcccaccaggtcaaactccagcaggttgtcctccatcatgtgaccgccgatcaccacc 1224

                                                                        
Query: 292  gacgtccgcggggccgcgccgccgtccaccacgccgaggcagagcgcgccgcccttggcg 351
            |||||   ||  ||| |||||||||||||||| ||||||||||| ||||||||||||| |
Sbjct: 1223 gacgtttccgacgccacgccgccgtccaccacaccgaggcagagagcgccgcccttggtg 1164

                                       
Query: 352  gccaccatcgagttggccccgaacacc 378
            |||||||||||||| ||||||||||||
Sbjct: 1163 gccaccatcgagttcgccccgaacacc 1137
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>dbj|AK122177.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148M15, full
            insert sequence
          Length = 1741

 Score =  172 bits (87), Expect = 5e-40
 Identities = 120/131 (91%)
 Strand = Plus / Minus

                                                                        
Query: 247  aactccagcaggttgtcctccatcgtgtgccccccgatcaccaccgacgtccgcggggcc 306
            |||||||||||||||||||||||| ||||||| |||||||| ||||||||| ||||  ||
Sbjct: 1519 aactccagcaggttgtcctccatcatgtgcccaccgatcacaaccgacgtctgcggctcc 1460

                                                                        
Query: 307  gcgccgccgtccaccacgccgaggcagagcgcgccgcccttggcggccaccatcgagttg 366
            | |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| 
Sbjct: 1459 gtgccggcgtccaccacgccgaggcagagcgcgcctcccttggtggccaccatcgagttc 1400

                       
Query: 367  gccccgaacac 377
            |||||||||||
Sbjct: 1399 gccccgaacac 1389
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                            
Query: 244      tcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccaccgacgtccgcggg 303
                |||||| |||||||| | ||||||||| |||| || ||||||||||||| || |  ||| 
Sbjct: 15506035 tcgaacaccagcaggatctcctccatcatgtggccgccgatcaccaccggcgcctccggc 15505976

                                                         
Query: 304      gccgcgccgccgtccaccacgccgaggcagagcgcgccgcc 344
                ||||| ||||||||||||||| ||||||||||||| |||||
Sbjct: 15505975 gccgctccgccgtccaccacggcgaggcagagcgccccgcc 15505935
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>dbj|AP005886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0689B09
          Length = 144932

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                         
Query: 244   tcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccaccgacgtccgcggg 303
             |||||| |||||||| | ||||||||| |||| || ||||||||||||| || |  ||| 
Sbjct: 26890 tcgaacaccagcaggatctcctccatcatgtggccgccgatcaccaccggcgcctccggc 26831

                                                      
Query: 304   gccgcgccgccgtccaccacgccgaggcagagcgcgccgcc 344
             ||||| ||||||||||||||| ||||||||||||| |||||
Sbjct: 26830 gccgctccgccgtccaccacggcgaggcagagcgccccgcc 26790
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>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1299_A11
          Length = 160099

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                          
Query: 244    tcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccaccgacgtccgcggg 303
              |||||| |||||||| | ||||||||| |||| || ||||||||||||| || |  ||| 
Sbjct: 155327 tcgaacaccagcaggatctcctccatcatgtggccgccgatcaccaccggcgcctccggc 155268

                                                       
Query: 304    gccgcgccgccgtccaccacgccgaggcagagcgcgccgcc 344
              ||||| ||||||||||||||| ||||||||||||| |||||
Sbjct: 155267 gccgctccgccgtccaccacggcgaggcagagcgccccgcc 155227
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>ref|NM_190069.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1269

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 244  tcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccaccg 292
            |||||| ||| |||||||| |||||||  |||||| |||||||||||||
Sbjct: 1181 tcgaacaccaccaggttgtgctccatctggtgcccgccgatcaccaccg 1133
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                                 
Query: 244      tcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccaccg 292
                |||||| ||| |||||||| |||||||  |||||| |||||||||||||
Sbjct: 41126162 tcgaacaccaccaggttgtgctccatctggtgcccgccgatcaccaccg 41126210



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 318     caccacgccgaggcagagcgc 338
               |||||||||||||||||||||
Sbjct: 2776452 caccacgccgaggcagagcgc 2776432



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 318     caccacgccgaggcagagcg 337
               ||||||||||||||||||||
Sbjct: 2782536 caccacgccgaggcagagcg 2782517
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>dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0504E02
          Length = 137468

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                              
Query: 244   tcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccaccg 292
             |||||| ||| |||||||| |||||||  |||||| |||||||||||||
Sbjct: 23217 tcgaacaccaccaggttgtgctccatctggtgcccgccgatcaccaccg 23265
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>dbj|AK108620.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-C07, full
            insert sequence
          Length = 1405

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 244  tcgaactccagcaggttgtcctccatcgtgtgccccccgatcaccaccg 292
            |||||| ||| |||||||| |||||||  |||||| |||||||||||||
Sbjct: 1102 tcgaacaccaccaggttgtgctccatctggtgcccgccgatcaccaccg 1054
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>gb|DQ485150.1| Burkholderia cepacia MPS gene, partial sequence
          Length = 1811

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 285  caccaccgacgtccgcggggccgcgcc 311
            ||||||||||||||||||| |||||||
Sbjct: 1638 caccaccgacgtccgcgggtccgcgcc 1664
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>gb|AF185273.1|AF185273 Burkholderia cepacia unknown sequence
          Length = 2351

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 285  caccaccgacgtccgcggggccgcgcc 311
            ||||||||||||||||||| |||||||
Sbjct: 1758 caccaccgacgtccgcgggtccgcgcc 1784
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>gb|AC012049.8| Homo sapiens chromosome 10 clone RP11-76F22, complete sequence
          Length = 142656

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 36     gttgattattcaaacagccaaa 57
              ||||||||||||||||||||||
Sbjct: 119629 gttgattattcaaacagccaaa 119650
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>gb|AC022537.8| Homo sapiens chromosome 10 clone RP11-40C11, complete sequence
          Length = 154939

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 36    gttgattattcaaacagccaaa 57
             ||||||||||||||||||||||
Sbjct: 70617 gttgattattcaaacagccaaa 70638
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>ref|XM_550168.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2374

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 318 caccacgccgaggcagagcgc 338
           |||||||||||||||||||||
Sbjct: 481 caccacgccgaggcagagcgc 461
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>ref|NM_001031296.1| Gallus gallus splicing factor, arginine/serine-rich 11 (SFRS11), mRNA
          Length = 2625

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 51   agccaaaacaaaacccagggggaaa 75
            ||||||||||||||||| |||||||
Sbjct: 2034 agccaaaacaaaacccacggggaaa 2010
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>gb|AC145433.2| Pan troglodytes BAC clone RP43-43I4 from 7, complete sequence
          Length = 179409

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 326   cgaggcagagcgcgccgccct 346
             |||||||||||||||||||||
Sbjct: 52859 cgaggcagagcgcgccgccct 52879
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>gb|AC142317.1| Pan troglodytes BAC clone RP43-52L16 from 7, complete sequence
          Length = 147345

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 326    cgaggcagagcgcgccgccct 346
              |||||||||||||||||||||
Sbjct: 132948 cgaggcagagcgcgccgccct 132928
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>emb|AJ720592.1| Gallus gallus mRNA for hypothetical protein, clone 20o8
          Length = 2625

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 51   agccaaaacaaaacccagggggaaa 75
            ||||||||||||||||| |||||||
Sbjct: 2034 agccaaaacaaaacccacggggaaa 2010
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>gb|AE005847.1| Caulobacter crescentus CB15 section 173 of 359 of the complete genome
          Length = 10886

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 334  agcgcgccgcccttggcggccacca 358
            ||||||||||||||||||| |||||
Sbjct: 9834 agcgcgccgcccttggcggtcacca 9858
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>emb|CR389009.1| Gallus gallus finished cDNA, clone ChEST177c22
          Length = 759

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 51  agccaaaacaaaacccagggggaaa 75
           ||||||||||||||||| |||||||
Sbjct: 194 agccaaaacaaaacccacggggaaa 170
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 307      gcgccgccgtccaccacgccg 327
                |||||||||||||||||||||
Sbjct: 20175099 gcgccgccgtccaccacgccg 20175079
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>gb|AC010002.6|AC010002 Homo sapiens chromosome 7 clone RP11-194N22, complete sequence
          Length = 169921

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 326    cgaggcagagcgcgccgccct 346
              |||||||||||||||||||||
Sbjct: 150167 cgaggcagagcgcgccgccct 150147
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>dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0007G12
          Length = 111819

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 307   gcgccgccgtccaccacgccg 327
             |||||||||||||||||||||
Sbjct: 41099 gcgccgccgtccaccacgccg 41079
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>dbj|AP002522.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0009G03
          Length = 163526

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 318   caccacgccgaggcagagcgc 338
             |||||||||||||||||||||
Sbjct: 82129 caccacgccgaggcagagcgc 82109



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   caccacgccgaggcagagcg 337
             ||||||||||||||||||||
Sbjct: 88213 caccacgccgaggcagagcg 88194
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>dbj|AK120703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170P19, full
           insert sequence
          Length = 2394

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 318 caccacgccgaggcagagcgc 338
           |||||||||||||||||||||
Sbjct: 481 caccacgccgaggcagagcgc 461
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 334     agcgcgccgcccttggcggccacca 358
               ||||||||||||| |||||||||||
Sbjct: 3289353 agcgcgccgccctgggcggccacca 3289377
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>ref|XM_550169.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1821

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 318 caccacgccgaggcagagcg 337
           ||||||||||||||||||||
Sbjct: 348 caccacgccgaggcagagcg 329
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>ref|XM_464952.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3558

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   acaaattttgactgcaatct 102
            ||||||||||||||||||||
Sbjct: 1744 acaaattttgactgcaatct 1763
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>ref|NM_186687.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3015

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 323 cgccgaggcagagcgcgccg 342
           ||||||||||||||||||||
Sbjct: 571 cgccgaggcagagcgcgccg 552
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>gb|AC146701.9| Mus musculus chromosome 10, clone RP24-142C15, complete sequence
          Length = 121683

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     aaacacacaaacaaattttg 92
              ||||||||||||||||||||
Sbjct: 121155 aaacacacaaacaaattttg 121136



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     aaacacacaaacaaattttg 92
              ||||||||||||||||||||
Sbjct: 116267 aaacacacaaacaaattttg 116248



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     aaacacacaaacaaattttg 92
              ||||||||||||||||||||
Sbjct: 113475 aaacacacaaacaaattttg 113456



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     aaacacacaaacaaattttg 92
              ||||||||||||||||||||
Sbjct: 108605 aaacacacaaacaaattttg 108586



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     aaacacacaaacaaattttg 92
              ||||||||||||||||||||
Sbjct: 104518 aaacacacaaacaaattttg 104499
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>gb|AC132461.3| Mus musculus chromosome 5 clone RP23-33C9, complete sequence
          Length = 196803

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   gcaagcacacatatcatctt 129
             ||||||||||||||||||||
Sbjct: 56902 gcaagcacacatatcatctt 56921
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>emb|CT009746.6| Zebrafish DNA sequence from clone CH73-236M19 in linkage group 18,
             complete sequence
          Length = 30929

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    gggggaaacacacaaacaaa 87
             ||||||||||||||||||||
Sbjct: 14594 gggggaaacacacaaacaaa 14613
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>gb|AC111096.15| Mus musculus chromosome 3, clone RP23-174B18, complete sequence
          Length = 209936

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 167    acccaaggcggaagttgttgcagg 190
              ||||||||| ||||||||||||||
Sbjct: 191105 acccaaggctgaagttgttgcagg 191128
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>emb|AL117328.5|HSA494O16 Human DNA sequence from clone RP11-494O16 on chromosome 22, complete
             sequence
          Length = 50502

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   cagggaggagctgaacccga 226
             ||||||||||||||||||||
Sbjct: 38983 cagggaggagctgaacccga 38964
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 323     cgccgaggcagagcgcgccg 342
               ||||||||||||||||||||
Sbjct: 7441037 cgccgaggcagagcgcgccg 7441056
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 40       attattcaaacagccaaaacaaaaccca 67
                ||||| ||||||||||||| ||||||||
Sbjct: 23775776 attatccaaacagccaaaaaaaaaccca 23775803



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 83       acaaattttgactgcaatct 102
                ||||||||||||||||||||
Sbjct: 10505544 acaaattttgactgcaatct 10505563
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>dbj|D90334.2| Homo sapiens HGF gene for hepatocyte growth factor, complete cds
          Length = 11451

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 40    attattcaaacagccaaaacaaaa 63
             |||||||||||||||||| |||||
Sbjct: 10145 attattcaaacagccaaaccaaaa 10122
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>gb|AY246560.1| Homo sapiens hepatocyte growth factor (hepapoietin A; scatter factor)
             (HGF) gene, complete cds
          Length = 73491

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 40    attattcaaacagccaaaacaaaa 63
             |||||||||||||||||| |||||
Sbjct: 71267 attattcaaacagccaaaccaaaa 71244
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>dbj|AP005694.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0063E14
          Length = 174415

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    acaaattttgactgcaatct 102
             ||||||||||||||||||||
Sbjct: 86712 acaaattttgactgcaatct 86731
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>dbj|AP004111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1058_F07
          Length = 95841

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 40    attattcaaacagccaaaacaaaaccca 67
             ||||| ||||||||||||| ||||||||
Sbjct: 86360 attatccaaacagccaaaaaaaaaccca 86387
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>dbj|AP005246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0061L20
          Length = 138926

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   cgccgaggcagagcgcgccg 342
             ||||||||||||||||||||
Sbjct: 19351 cgccgaggcagagcgcgccg 19370
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>gb|AC004960.1|AC004960 Homo sapiens PAC clone RP5-1098B1 from 7q11.23-q21, complete sequence
          Length = 143834

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 40    attattcaaacagccaaaacaaaa 63
             |||||||||||||||||| |||||
Sbjct: 47574 attattcaaacagccaaaccaaaa 47597
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>gb|AC112685.16| Mus musculus chromosome 3, clone RP23-340E10, complete sequence
          Length = 248750

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 167   acccaaggcggaagttgttgcagg 190
             ||||||||| ||||||||||||||
Sbjct: 12934 acccaaggctgaagttgttgcagg 12957
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>gb|AC170751.2| Mus musculus BAC clone CH25-484K21 from chromosome 10, complete
             sequence
          Length = 105368

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    aaacacacaaacaaattttg 92
             ||||||||||||||||||||
Sbjct: 33049 aaacacacaaacaaattttg 33068



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    aaacacacaaacaaattttg 92
             ||||||||||||||||||||
Sbjct: 28962 aaacacacaaacaaattttg 28981



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    aaacacacaaacaaattttg 92
             ||||||||||||||||||||
Sbjct: 24092 aaacacacaaacaaattttg 24111



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    aaacacacaaacaaattttg 92
             ||||||||||||||||||||
Sbjct: 21300 aaacacacaaacaaattttg 21319



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    aaacacacaaacaaattttg 92
             ||||||||||||||||||||
Sbjct: 16412 aaacacacaaacaaattttg 16431
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>emb|AL808021.12| Mouse DNA sequence from clone RP23-349B15 on chromosome 11, complete
             sequence
          Length = 149561

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   actccagcaggttgtcctcc 267
             ||||||||||||||||||||
Sbjct: 28862 actccagcaggttgtcctcc 28881
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>emb|AL626784.11| Mouse DNA sequence from clone RP23-392J14 on chromosome 4, complete
             sequence
          Length = 211585

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    tcaaacagccaaaacaaaac 64
             ||||||||||||||||||||
Sbjct: 19090 tcaaacagccaaaacaaaac 19071


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,095,486
Number of Sequences: 3902068
Number of extensions: 4095486
Number of successful extensions: 82293
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81758
Number of HSP's gapped (non-prelim): 530
length of query: 378
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 356
effective length of database: 17,147,199,772
effective search space: 6104403118832
effective search space used: 6104403118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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