ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast21h05 |
|---|---|
| Clone Library Name | barley_pub |
>TPT2_BRAOB (P52178) Triose phosphate/phosphate translocator, non-green| plastid, chloroplast precursor (CTPT) Length = 402 Score = 50.1 bits (118), Expect = 1e-06 Identities = 21/28 (75%), Positives = 26/28 (92%) Frame = -1 Query: 322 LFFRTPISPVNALGTGAALAGVYLYSRL 239 +FF+TP+SPVNA GTG ALAGV+LYSR+ Sbjct: 365 IFFKTPVSPVNAFGTGIALAGVFLYSRV 392
>GPT1_ARATH (Q9M5A9) Glucose-6-phosphate/phosphate translocator 1, chloroplast| precursor Length = 388 Score = 38.5 bits (88), Expect = 0.004 Identities = 15/27 (55%), Positives = 20/27 (74%) Frame = -1 Query: 322 LFFRTPISPVNALGTGAALAGVYLYSR 242 + FRTP+ PVNALG A+ G +LYS+ Sbjct: 359 IIFRTPVQPVNALGAAIAILGTFLYSQ 385
>GPT2_ARATH (Q94B38) Glucose-6-phosphate/phosphate translocator 2, chloroplast| precursor Length = 388 Score = 36.6 bits (83), Expect = 0.016 Identities = 15/27 (55%), Positives = 19/27 (70%) Frame = -1 Query: 322 LFFRTPISPVNALGTGAALAGVYLYSR 242 + F TPI PVNALG A+ G +LYS+ Sbjct: 359 IIFHTPIQPVNALGAAIAIFGTFLYSQ 385
>PHF1_CLOPA (P29166) Periplasmic [Fe] hydrogenase 1 (EC 1.12.7.2) (Fe-only| hydrogenase) (CpI) Length = 574 Score = 31.2 bits (69), Expect = 0.68 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +3 Query: 27 EDVTNLQDQKFGLATIERSCCRL*YRCTTGCGKFCTTYYLNTFSR 161 +D T D++ T++R+ C L RC CGK TY + ++ Sbjct: 127 KDKTEYVDERSKSLTVDRTKCLLCGRCVNACGKNTETYAMKFLNK 171
>RGS2_MOUSE (O08849) Regulator of G-protein signaling 2 (RGS2)| Length = 211 Score = 29.6 bits (65), Expect = 2.0 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = +1 Query: 43 FKTKSLVWPLLKEAAVGCSTGVLRAVASSVQPTISIHFLDLVFY 174 F+TKSL+ ++EA GC T + V S ++ FL+ FY Sbjct: 152 FQTKSLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLESEFY 195
>S12A7_MOUSE (Q9WVL3) Solute carrier family 12 member 7 (Electroneutral| potassium-chloride cotransporter 4) (K-Cl cotransporter 4) Length = 1083 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +1 Query: 64 WPLLKEAAVGCSTGVLRAVASSVQPTISIHFLDLVFYI 177 W LL A + C TG+L A SV P +S+ FL ++ Sbjct: 556 WALLLTALI-CETGILIASLDSVAPILSMFFLMCYMFV 592
>RGS2_RAT (Q9JHX0) Regulator of G-protein signaling 2 (RGS2)| Length = 211 Score = 28.5 bits (62), Expect = 4.4 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = +1 Query: 43 FKTKSLVWPLLKEAAVGCSTGVLRAVASSVQPTISIHFLDLVFY 174 F+TK+L+ ++EA GC T + V S ++ FL+ FY Sbjct: 152 FQTKTLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLESEFY 195
>RGS2_PIG (Q3S853) Regulator of G-protein signaling 2 (RGS2)| Length = 212 Score = 28.5 bits (62), Expect = 4.4 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = +1 Query: 43 FKTKSLVWPLLKEAAVGCSTGVLRAVASSVQPTISIHFLDLVFY 174 F+TK+L+ ++EA GC T + V S ++ FL+ FY Sbjct: 152 FQTKTLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLESEFY 195
>RGS2_HUMAN (P41220) Regulator of G-protein signaling 2 (RGS2) (G0/G1 switch| regulatory protein 8) Length = 211 Score = 28.5 bits (62), Expect = 4.4 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = +1 Query: 43 FKTKSLVWPLLKEAAVGCSTGVLRAVASSVQPTISIHFLDLVFY 174 F+TK+L+ ++EA GC T + V S ++ FL+ FY Sbjct: 152 FQTKTLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLESEFY 195
>GR48C_DROME (Q9W2B2) Putative gustatory receptor 58c| Length = 412 Score = 28.5 bits (62), Expect = 4.4 Identities = 11/14 (78%), Positives = 13/14 (92%) Frame = +2 Query: 119 WQVLYNLLSQYIFS 160 WQVL+NLL+ YIFS Sbjct: 260 WQVLFNLLTTYIFS 273
>SI1L1_MOUSE (Q8C0T5) Signal-induced proliferation-associated 1-like protein 1| Length = 1782 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = -3 Query: 167 TRSRKCIEIVGCTELATARSTPVLQPTAASFNSGQTKLL 51 +RS + IE C E +++ +PV Q ++ S NS + +L Sbjct: 94 SRSSQEIETSSCLESLSSKGSPVSQGSSVSLNSNDSAML 132
>TPT_PEA (P21727) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) (p36) (E30) Length = 402 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -1 Query: 322 LFFRTPISPVNALGTGAALAGVYLYS 245 + F IS +GTG A+AGV LYS Sbjct: 361 IIFGNKISTQTGIGTGIAIAGVALYS 386
>SL35E_HUMAN (Q96K37) Solute carrier family 35 member E1| Length = 266 Score = 28.1 bits (61), Expect = 5.8 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = -1 Query: 322 LFFRTPISPVNALGTGAALAGVYLYSR 242 + R P++ N LG A+ GV+LY++ Sbjct: 164 IMLRNPVTSTNVLGMMTAILGVFLYNK 190
>SL35E_MOUSE (Q8CD26) Solute carrier family 35 member E1| Length = 265 Score = 28.1 bits (61), Expect = 5.8 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = -1 Query: 322 LFFRTPISPVNALGTGAALAGVYLYSR 242 + R P++ N LG A+ GV+LY++ Sbjct: 164 IMLRNPVTSTNVLGMMTAILGVFLYNK 190
>SI1L1_RAT (O35412) Signal-induced proliferation-associated 1-like protein 1| (SPA-1-like protein p1294) Length = 1822 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = -3 Query: 167 TRSRKCIEIVGCTELATARSTPVLQPTAASFNSGQTKLL 51 +RS + IE C E +++ +PV Q ++ S NS + +L Sbjct: 94 SRSSQEIETSSCLESLSSKGSPVSQGSSVSLNSNDSAML 132
>SPG21_XENLA (Q5FVD6) Maspardin (Spastic paraplegia 21 autosomal recessive Mast| syndrome protein homolog) Length = 310 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%) Frame = +3 Query: 159 RPSLLYQKPVSGTGKKHFHQLL-----GFVFLSLEY 251 R ++Y PVSGT FHQ+L G+ ++L+Y Sbjct: 43 RCPIIYLPPVSGTADVFFHQILALTGWGYRVIALQY 78
>S12A7_HUMAN (Q9Y666) Solute carrier family 12 member 7 (Electroneutral| potassium-chloride cotransporter 4) (K-Cl cotransporter 4) Length = 1083 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +1 Query: 64 WPLLKEAAVGCSTGVLRAVASSVQPTISIHFLDLVFYI 177 W LL + C TG+L A SV P +S+ FL ++ Sbjct: 556 WALLLTVLI-CETGILIASLDSVAPILSMFFLMCYLFV 592
>TPT1_BRAOB (P52177) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) Length = 407 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -1 Query: 322 LFFRTPISPVNALGTGAALAGVYLYS 245 + F IS +GTG A+AGV LYS Sbjct: 366 VIFGNKISTQTGIGTGIAIAGVALYS 391
>DSBE_SALTY (Q8XFK6) Thiol:disulfide interchange protein dsbE (Cytochrome c| biogenesis protein ccmG) Length = 185 Score = 27.7 bits (60), Expect = 7.5 Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Frame = +1 Query: 1 VRRFAIIQERMLQIFKTKSLVWPLLKEAAVGCSTGVLRAVASSVQPTISIHFLDLVF-YI 177 ++R ++ ++ + +L+W L + A T + A+ P + L+ Y Sbjct: 1 MKRNVLLLPLLIFLLIAAALLWQLARNAQGDDPTNLESALTGKPVPAFRLESLETPGQYY 60 Query: 178 KNLYLEQGKNIFINSWASF 234 + L QGK + +N WA++ Sbjct: 61 QAEVLTQGKPVLLNVWATW 79
>DSBE_SALTI (Q8XFE5) Thiol:disulfide interchange protein dsbE (Cytochrome c| biogenesis protein ccmG) Length = 185 Score = 27.7 bits (60), Expect = 7.5 Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Frame = +1 Query: 1 VRRFAIIQERMLQIFKTKSLVWPLLKEAAVGCSTGVLRAVASSVQPTISIHFLDLVF-YI 177 ++R ++ ++ + +L+W L + A T + A+ P + L+ Y Sbjct: 1 MKRNVLLLPLLIFLLIAAALLWQLARNAQGDDPTNLESALTGKPVPAFRLESLETPGQYY 60 Query: 178 KNLYLEQGKNIFINSWASF 234 + L QGK + +N WA++ Sbjct: 61 QAEVLTQGKPVLLNVWATW 79
>RSMC_BUCBP (Q89AI2) Ribosomal RNA small subunit methyltransferase C (EC| 2.1.1.52) (rRNA (guanine-N(2)-)-methyltransferase) (16S rRNA m2G1207 methyltransferase) Length = 326 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/45 (28%), Positives = 25/45 (55%) Frame = +1 Query: 28 RMLQIFKTKSLVWPLLKEAAVGCSTGVLRAVASSVQPTISIHFLD 162 ++L TK+L W + + +GC +GVL +++ P I + +D Sbjct: 170 KLLMSTCTKNLRWKTVLD--IGCGSGVLSTYLATIFPEIKLTLID 212
>CN140_MACFA (Q9BGW4) Protein C14orf140 homolog| Length = 531 Score = 27.7 bits (60), Expect = 7.5 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = -3 Query: 245 QAQENEAQELMKMFFPCSRYR 183 QA+ENE +EL K+ FP SR + Sbjct: 252 QAKENENRELQKIIFPRSRVK 272
>ADR2_CAEEL (Q22618) Probable double-stranded RNA-specific adenosine deaminase| (EC 3.5.4.-) (DRADA) Length = 495 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +1 Query: 88 VGCSTGVLRAVASSVQPTISIHFLDLVFY 174 + CS +LRA VQ I HF+D ++Y Sbjct: 303 MSCSDKLLRANVLGVQGAILSHFIDPIYY 331
>PHSG_AQUAE (O66932) Glycogen phosphorylase (EC 2.4.1.1)| Length = 692 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = +2 Query: 101 QVYYGLWQVLYNLLSQYIFST*SSISKTCIWNRE 202 +VY+G+W+V Y+ T ++ + WNRE Sbjct: 187 KVYFGVWEVNVGKTKLYLLDT--NVEENTPWNRE 218
>YCX9_CHLRE (Q32065) Hypothetical 341.7 kDa protein in psbD-psbC intergenic| region (ORF2971) (ORFB) Length = 2971 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 120 GKFCTTYYLNTFSRPSLLYQKPVSGTGKK 206 GKF Y+LN S + KPVS T K+ Sbjct: 2520 GKFVLNYFLNNQLTQSSIIDKPVSVTNKQ 2548 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,333,204 Number of Sequences: 219361 Number of extensions: 940029 Number of successful extensions: 2299 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2258 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2299 length of database: 80,573,946 effective HSP length: 82 effective length of database: 62,586,344 effective search space used: 1502072256 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
