ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast21e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y917_PYRAB (Q9V074) UPF0130 protein PYRAB09170 30 2.1
2Y175_PYRKO (Q5JFK6) UPF0130 protein TK0175 28 4.8
3NSP1_MEDTR (Q4VYC8) Nodulation signaling pathway 1 protein 28 6.2
4MARK1_MOUSE (Q8VHJ5) Serine/threonine-protein kinase MARK1 (EC 2... 28 8.1
5MARK1_RAT (O08678) Serine/threonine-protein kinase MARK1 (EC 2.7... 28 8.1

>Y917_PYRAB (Q9V074) UPF0130 protein PYRAB09170|
          Length = 194

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 253 GRPWRITRSPAMEVGGRTLIDG 188
           G+ W + RSP + VG RTL DG
Sbjct: 93  GQLWLLVRSPILHVGARTLEDG 114



to top

>Y175_PYRKO (Q5JFK6) UPF0130 protein TK0175|
          Length = 198

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 256 SGRPWRITRSPAMEVGGRTLID 191
           SG+ W + RSP + VG RTL D
Sbjct: 93  SGQLWFLVRSPILHVGARTLED 114



to top

>NSP1_MEDTR (Q4VYC8) Nodulation signaling pathway 1 protein|
          Length = 554

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 19/68 (27%), Positives = 27/68 (39%)
 Frame = +1

Query: 10  YLNTEYNHRXXXXXXXWNWNTGIENQSMCTCMHAKTRSFNAVSSKFNEKKYGATTCVRGS 189
           +L+  YN+        WN N  I NQ     + A T S NA +S  N      TT     
Sbjct: 26  FLDDPYNNGYIHEYEIWNQNQDISNQYQ---IDANTNSSNATNSTTNIVAASTTTSTTSL 82

Query: 190 RRSRFYHL 213
             + F ++
Sbjct: 83  EPNSFNNI 90



to top

>MARK1_MOUSE (Q8VHJ5) Serine/threonine-protein kinase MARK1 (EC 2.7.11.1)|
           (MAP/microtubule affinity-regulating kinase 1) (ELKL
           motif serine/threonine-protein kinase 3)
          Length = 795

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 248 SMADHSLPGDGSRW*NLDRRLPRTHVVAPYFFSLNLEETALKLLVL 111
           ++   SLP DG     L  R+ R     P++ S + E    KLLVL
Sbjct: 249 TLVSGSLPFDGQNLKELRERVLRGKYRVPFYMSTDCENLLKKLLVL 294



to top

>MARK1_RAT (O08678) Serine/threonine-protein kinase MARK1 (EC 2.7.11.1)|
           (MAP/microtubule affinity-regulating kinase 1)
          Length = 793

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 248 SMADHSLPGDGSRW*NLDRRLPRTHVVAPYFFSLNLEETALKLLVL 111
           ++   SLP DG     L  R+ R     P++ S + E    KLLVL
Sbjct: 249 TLVSGSLPFDGQNLKELRERVLRGKYRVPFYMSTDCENLLKKLLVL 294


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,317,289
Number of Sequences: 219361
Number of extensions: 685920
Number of successful extensions: 1767
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1767
length of database: 80,573,946
effective HSP length: 61
effective length of database: 67,192,925
effective search space used: 1612630200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top