ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast21d04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 105 7e-20
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 105 7e-20
3dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic D... 105 7e-20
4dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic D... 105 7e-20
5gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome... 96 6e-17
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 96 6e-17
7emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0... 96 6e-17
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 96 6e-17
9dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 86 6e-14
10dbj|AP005658.3| Oryza sativa (japonica cultivar-group) genomic D... 86 6e-14
11dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
12dbj|AP002819.1| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
13gb|AC160211.1| Genomic seqeunce for Zea mays BAC clone ZMMBBb044... 60 3e-06
14emb|AL354936.21| Human DNA sequence from clone RP11-374A22 on ch... 42 0.82
15emb|CR378675.1| Photobacterium profundum SS9 chromosome 2; segme... 42 0.82
16emb|BX664716.19| Zebrafish DNA sequence from clone DKEY-3D4 in l... 42 0.82
17gb|AC154048.1| Drosophila melanogaster clone BACR29A04, complete... 40 3.2
18gb|AC154047.2| Drosophila melanogaster clone BACR26B05, complete... 40 3.2
19gb|AC122825.4| Mus musculus BAC clone RP23-209E13 from 10, compl... 40 3.2
20gb|AC165252.2| Mus musculus BAC clone RP23-355O12 from chromosom... 40 3.2
21emb|BX323073.12| Zebrafish DNA sequence from clone DKEY-117J3 in... 40 3.2
22gb|AC157658.2| Mus musculus BAC clone RP23-331E4 from chromosome... 40 3.2
23gb|AE003486.2| Drosophila melanogaster chromosome X, section 38 ... 40 3.2
24emb|AL671335.12| Mouse DNA sequence from clone RP23-130J1 on chr... 40 3.2
25emb|AL669940.14| Mouse DNA sequence from clone RP23-214P11 on ch... 40 3.2 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  105 bits (53), Expect = 7e-20
 Identities = 99/113 (87%), Gaps = 1/113 (0%)
 Strand = Plus / Plus

                                                                            
Query: 48       tgggttaaatgcaactagctccaatctaaccctt-atgtttggatactttagggctagtt 106
                ||||||| ||||||||||| |||||||||||| | |||||||||| ||||||||||| ||
Sbjct: 15954277 tgggttagatgcaactagccccaatctaacccctcatgtttggatcctttagggctattt 15954336

                                                                     
Query: 107      gaacccaaactagctcaaactaactttagctcataaatccaaacagggccatt 159
                || ||| |||||||||||||||||| || | | |  |||||||||||||||||
Sbjct: 15954337 gagccccaactagctcaaactaactctaacccttggatccaaacagggccatt 15954389
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  105 bits (53), Expect = 7e-20
 Identities = 99/113 (87%), Gaps = 1/113 (0%)
 Strand = Plus / Plus

                                                                            
Query: 48       tgggttaaatgcaactagctccaatctaaccctt-atgtttggatactttagggctagtt 106
                ||||||| ||||||||||| |||||||||||| | |||||||||| ||||||||||| ||
Sbjct: 35788417 tgggttagatgcaactagccccaatctaacccctcatgtttggatcctttagggctattt 35788476

                                                                     
Query: 107      gaacccaaactagctcaaactaactttagctcataaatccaaacagggccatt 159
                || ||| |||||||||||||||||| || | | |  |||||||||||||||||
Sbjct: 35788477 gagccctaactagctcaaactaactctaacccttggatccaaacagggccatt 35788529
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>dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0040K22
          Length = 155832

 Score =  105 bits (53), Expect = 7e-20
 Identities = 99/113 (87%), Gaps = 1/113 (0%)
 Strand = Plus / Plus

                                                                         
Query: 48    tgggttaaatgcaactagctccaatctaaccctt-atgtttggatactttagggctagtt 106
             ||||||| ||||||||||| |||||||||||| | |||||||||| ||||||||||| ||
Sbjct: 35679 tgggttagatgcaactagccccaatctaacccctcatgtttggatcctttagggctattt 35738

                                                                  
Query: 107   gaacccaaactagctcaaactaactttagctcataaatccaaacagggccatt 159
             || ||| |||||||||||||||||| || | | |  |||||||||||||||||
Sbjct: 35739 gagccccaactagctcaaactaactctaacccttggatccaaacagggccatt 35791
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>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1149_C12
          Length = 120743

 Score =  105 bits (53), Expect = 7e-20
 Identities = 99/113 (87%), Gaps = 1/113 (0%)
 Strand = Plus / Plus

                                                                         
Query: 48    tgggttaaatgcaactagctccaatctaaccctt-atgtttggatactttagggctagtt 106
             ||||||| ||||||||||| |||||||||||| | |||||||||| ||||||||||| ||
Sbjct: 59132 tgggttagatgcaactagccccaatctaacccctcatgtttggatcctttagggctattt 59191

                                                                  
Query: 107   gaacccaaactagctcaaactaactttagctcataaatccaaacagggccatt 159
             || ||| |||||||||||||||||| || | | |  |||||||||||||||||
Sbjct: 59192 gagccctaactagctcaaactaactctaacccttggatccaaacagggccatt 59244
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>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBb0088L13 map near C50029S, complete sequence
          Length = 129900

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 97/112 (86%), Gaps = 1/112 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   tgggttaaatgcaactagctccaatctaaccctt-atgtttggatactttagggctagtt 106
            ||||||| |||| |||||| |||||||||||| | |||||||||| ||||||||||| ||
Sbjct: 6291 tgggttagatgcgactagccccaatctaacccctcatgtttggatcctttagggctattt 6350

                                                                
Query: 107  gaacccaaactagctcaaactaactttagctcataaatccaaacagggccat 158
            || ||| |||||||||||||||||| || | | |  ||||||||||||||||
Sbjct: 6351 gagccccaactagctcaaactaactctaacccttggatccaaacagggccat 6402
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 97/112 (86%), Gaps = 1/112 (0%)
 Strand = Plus / Plus

                                                                            
Query: 48       tgggttaaatgcaactagctccaatctaaccctt-atgtttggatactttagggctagtt 106
                ||||||| |||| |||||| |||||||||||| | |||||||||| ||||||||||| ||
Sbjct: 24772595 tgggttagatgcgactagccccaatctaacccctcatgtttggatcctttagggctattt 24772654

                                                                    
Query: 107      gaacccaaactagctcaaactaactttagctcataaatccaaacagggccat 158
                || ||| |||||||||||||||||| || | | |  ||||||||||||||||
Sbjct: 24772655 gagccccaactagctcaaactaactctaacccttggatccaaacagggccat 24772706
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>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from
             chromosome 3 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 128559

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 97/112 (86%), Gaps = 1/112 (0%)
 Strand = Plus / Plus

                                                                         
Query: 48    tgggttaaatgcaactagctccaatctaaccctt-atgtttggatactttagggctagtt 106
             ||||||| |||| |||||| |||||||||||| | |||||||||| ||||||||||| ||
Sbjct: 58007 tgggttagatgcgactagccccaatctaacccctcatgtttggatcctttagggctattt 58066

                                                                 
Query: 107   gaacccaaactagctcaaactaactttagctcataaatccaaacagggccat 158
             || ||| |||||||||||||||||| || | | |  ||||||||||||||||
Sbjct: 58067 gagccccaactagctcaaactaactctaacccttggatccaaacagggccat 58118
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 97/112 (86%), Gaps = 1/112 (0%)
 Strand = Plus / Plus

                                                                            
Query: 48       tgggttaaatgcaactagctccaatctaaccctt-atgtttggatactttagggctagtt 106
                ||||||| |||| |||||| |||||||||||| | |||||||||| ||||||||||| ||
Sbjct: 24862379 tgggttagatgcgactagccccaatctaacccctcatgtttggatcctttagggctattt 24862438

                                                                    
Query: 107      gaacccaaactagctcaaactaactttagctcataaatccaaacagggccat 158
                || ||| |||||||||||||||||| || | | |  ||||||||||||||||
Sbjct: 24862439 gagccccaactagctcaaactaactctaacccttggatccaaacagggccat 24862490
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 95/111 (85%), Gaps = 1/111 (0%)
 Strand = Plus / Minus

                                                                            
Query: 48       tgggttaaatgcaactagctccaatctaaccctt-atgtttggatactttagggctagtt 106
                ||||||| |||||||| || |||||||||||| | |||||||| | ||||||||||| ||
Sbjct: 22148331 tgggttagatgcaactggccccaatctaacccctcatgtttgggtcctttagggctattt 22148272

                                                                   
Query: 107      gaacccaaactagctcaaactaactttagctcataaatccaaacagggcca 157
                || ||  |||||||||||||||||| || | | | ||||||||||||||||
Sbjct: 22148271 gagcctcaactagctcaaactaactctaacccttgaatccaaacagggcca 22148221
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>dbj|AP005658.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0620D11
          Length = 140245

 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 95/111 (85%), Gaps = 1/111 (0%)
 Strand = Plus / Minus

                                                                         
Query: 48    tgggttaaatgcaactagctccaatctaaccctt-atgtttggatactttagggctagtt 106
             ||||||| |||||||| || |||||||||||| | |||||||| | ||||||||||| ||
Sbjct: 65630 tgggttagatgcaactggccccaatctaacccctcatgtttgggtcctttagggctattt 65571

                                                                
Query: 107   gaacccaaactagctcaaactaactttagctcataaatccaaacagggcca 157
             || ||  |||||||||||||||||| || | | | ||||||||||||||||
Sbjct: 65570 gagcctcaactagctcaaactaactctaacccttgaatccaaacagggcca 65520
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 75/85 (88%), Gaps = 1/85 (1%)
 Strand = Plus / Minus

                                                                            
Query: 48       tgggttaaatgcaactagctccaatctaac-ccttatgtttggatactttagggctagtt 106
                ||||||| ||||||||||| |||||||||| ||| |||||||||| ||||| ||||| ||
Sbjct: 24923143 tgggttagatgcaactagccccaatctaactcctcatgtttggatcctttaaggctattt 24923084

                                         
Query: 107      gaacccaaactagctcaaactaact 131
                || ||  ||||||||||||||||||
Sbjct: 24923083 gagcctcaactagctcaaactaact 24923059
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>dbj|AP002819.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0501G01
          Length = 154561

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 75/85 (88%), Gaps = 1/85 (1%)
 Strand = Plus / Minus

                                                                          
Query: 48     tgggttaaatgcaactagctccaatctaac-ccttatgtttggatactttagggctagtt 106
              ||||||| ||||||||||| |||||||||| ||| |||||||||| ||||| ||||| ||
Sbjct: 146263 tgggttagatgcaactagccccaatctaactcctcatgtttggatcctttaaggctattt 146204

                                       
Query: 107    gaacccaaactagctcaaactaact 131
              || ||  ||||||||||||||||||
Sbjct: 146203 gagcctcaactagctcaaactaact 146179
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>gb|AC160211.1| Genomic seqeunce for Zea mays BAC clone ZMMBBb0448F23, complete
             sequence
          Length = 132549

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                         
Query: 83    tgtttggatactttagggctagttgaacccaaactagctcaaactaactttagctcataa 142
             ||||||| |||||| ||||||||| | ||||||||||| ||||||| || |||| | |  
Sbjct: 69624 tgtttggctacttttgggctagtttagcccaaactagcccaaactagctctagcccttgg 69683

                           
Query: 143   atccaaacagggcc 156
             ||||||||||||||
Sbjct: 69684 atccaaacagggcc 69697
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>emb|AL354936.21| Human DNA sequence from clone RP11-374A22 on chromosome 6 Contains a
             novel gene, the 5' end of the TCBA1 gene for T-cell
             lymphoma breakpoint associated target 1 and a CpG island,
             complete sequence
          Length = 161618

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 108   aacccaaactagctcaaactaactt 132
             ||||||||||| |||||||||||||
Sbjct: 26633 aacccaaactaactcaaactaactt 26657
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>emb|CR378675.1| Photobacterium profundum SS9 chromosome 2; segment 1/7
          Length = 349544

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 199   atttatttcaccaaaaaattc 219
             |||||||||||||||||||||
Sbjct: 71626 atttatttcaccaaaaaattc 71646
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>emb|BX664716.19| Zebrafish DNA sequence from clone DKEY-3D4 in linkage group 9, complete
             sequence
          Length = 198430

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 197   gcatttatttcaccaaaaaat 217
             |||||||||||||||||||||
Sbjct: 80782 gcatttatttcaccaaaaaat 80802
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>gb|AC154048.1| Drosophila melanogaster clone BACR29A04, complete sequence
          Length = 159930

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    aacatggccaaaacacacaa 188
              ||||||||||||||||||||
Sbjct: 141692 aacatggccaaaacacacaa 141673
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>gb|AC154047.2| Drosophila melanogaster clone BACR26B05, complete sequence
          Length = 162638

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   aacatggccaaaacacacaa 188
             ||||||||||||||||||||
Sbjct: 43591 aacatggccaaaacacacaa 43572
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>gb|AC122825.4| Mus musculus BAC clone RP23-209E13 from 10, complete sequence
          Length = 177676

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     ccttatgtttggatacttta 97
              ||||||||||||||||||||
Sbjct: 151715 ccttatgtttggatacttta 151734
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>gb|AC165252.2| Mus musculus BAC clone RP23-355O12 from chromosome 16, complete sequence
          Length = 178619

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 78     ccttatgtttggatactttagggctagt 105
              |||| |||||||||||| ||||||||||
Sbjct: 101634 ccttctgtttggatactgtagggctagt 101607
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>emb|BX323073.12| Zebrafish DNA sequence from clone DKEY-117J3 in linkage group 21,
             complete sequence
          Length = 118703

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   atttatttcaccaaaaaatt 218
             ||||||||||||||||||||
Sbjct: 17857 atttatttcaccaaaaaatt 17838
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>gb|AC157658.2| Mus musculus BAC clone RP23-331E4 from chromosome 12, complete sequence
          Length = 203717

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    aacccaaactagctcaaact 127
              ||||||||||||||||||||
Sbjct: 126152 aacccaaactagctcaaact 126133
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>gb|AE003486.2| Drosophila melanogaster chromosome X, section 38 of 74 of the complete
              sequence
          Length = 328128

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 169    aacatggccaaaacacacaa 188
              ||||||||||||||||||||
Sbjct: 247236 aacatggccaaaacacacaa 247255
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>emb|AL671335.12| Mouse DNA sequence from clone RP23-130J1 on chromosome X, complete
              sequence
          Length = 175336

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 147    aaacagggccattttaaagtggaa 170
              |||||||||||||| |||||||||
Sbjct: 112843 aaacagggccatttgaaagtggaa 112820
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>emb|AL669940.14| Mouse DNA sequence from clone RP23-214P11 on chromosome 4, complete
              sequence
          Length = 129987

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 199    atttatttcaccaaaaaatt 218
              ||||||||||||||||||||
Sbjct: 123446 atttatttcaccaaaaaatt 123427


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,096,209
Number of Sequences: 3902068
Number of extensions: 2096209
Number of successful extensions: 38773
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38621
Number of HSP's gapped (non-prelim): 132
length of query: 251
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 229
effective length of database: 17,147,199,772
effective search space: 3926708747788
effective search space used: 3926708747788
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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