ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast21c07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
3dbj|AK121700.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
4dbj|AK105759.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 82 2e-12
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 82 2e-12
7emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb... 82 2e-12
8emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa... 82 2e-12
9gb|AF264732.1|AF264732 Oryza sativa microsatellite 28CAC sequence 76 1e-10
10gb|AY107379.1| Zea mays PCO087705 mRNA sequence 60 7e-06
11gb|BT019155.1| Zea mays clone Contig818.F mRNA sequence 56 1e-04
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 4e-04
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
14gb|AC137635.2| Genomic sequence for Oryza sativa, Nipponbare str... 54 4e-04
15dbj|AK102357.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
16gb|AY109329.1| Zea mays CL1979_1 mRNA sequence 48 0.025
17gb|AC116516.7| Mus musculus chromosome 1, clone RP24-336H7, comp... 42 1.6
18emb|AL157385.15| Human DNA sequence from clone RP11-129O7 on chr... 42 1.6
19dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 42 1.6
20gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 6.2
21emb|CR722881.2|CNS0GKPZ Tetraodon nigroviridis full-length cDNA 40 6.2
22emb|CR318653.8| Zebrafish DNA sequence from clone DKEY-19B23 in ... 40 6.2
23gb|AC137077.26| Medicago truncatula clone mth2-8g15, complete se... 40 6.2
24ref|XM_783053.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.2
25emb|X65256.1|XLCFTRM X.laevis CFTR mRNA 40 6.2
26gb|AC040965.8| Homo sapiens chromosome 8, clone RP11-481K20, com... 40 6.2
27dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
28gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) ch... 40 6.2
29gb|AC093779.3| Homo sapiens BAC clone RP11-168E22 from 4, comple... 40 6.2
30dbj|AB186487.1| Comamonas testosteroni degradation gene cluster ... 40 6.2
31gb|AY126275.1| Mamestra configurata nucleopolyhedrovirus B, comp... 40 6.2
32emb|AJ238093.1|HSA238093 Homo sapiens partial AF-4 gene, exons 2... 40 6.2
33emb|CT573502.2| Medicago truncatula chromosome 5 clone mte1-69f2... 40 6.2
34dbj|AP003177.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 6.2
35dbj|AP003028.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 6.2
36gb|U60209.1|XLU60209 Xenopus laevis cystic fibrosis transmembran... 40 6.2
37gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
38gb|AY795849.1| Thuja occidentalis bark protein-like protein mRNA... 40 6.2
39emb|AJ408921.1|HSA408921 Homo sapiens chromosomal breakpoint fra... 40 6.2
40emb|AJ430604.1|HSA430604 Homo sapiens chromosomal breakpoint fra... 40 6.2
41emb|AJ430602.1|HSA430602 Homo sapiens chromosomal breakpoint fra... 40 6.2
42dbj|D21877.1|SUHNAPH Hemicentrotus pulcherrimus mRNA for Nucleos... 40 6.2 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                                
Query: 319     ctcacatcaccgagcagctgttggggtcctcgtcgctgaagtagttgta 367
               |||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 2195213 ctcacatcaccgagcagctgtttgggttctcgtcgctgaagtagttgta 2195165



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                    
Query: 78      tcatctcttatgacat-ctatagataattactgtacctacactcgccttcaag 129
               ||||||||||||| |  ||||||||||||||| |||||||  |||||||||||
Sbjct: 2195545 tcatctcttatgaaaaactatagataattactatacctaccttcgccttcaag 2195493
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                                
Query: 319     ctcacatcaccgagcagctgttggggtcctcgtcgctgaagtagttgta 367
               |||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 2153461 ctcacatcaccgagcagctgttcgggttctcgtcgctgaagtagttgta 2153413



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                    
Query: 78      tcatctcttatgacat-ctatagataattactgtacctacactcgccttcaag 129
               ||||||||||||| |  ||||||||||||||| |||||||  |||||||||||
Sbjct: 2153788 tcatctcttatgaaaaactatagataattactatacctaccttcgccttcaag 2153736
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>dbj|AK121700.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073F21, full
            insert sequence
          Length = 2324

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                             
Query: 319  ctcacatcaccgagcagctgttggggtcctcgtcgctgaagtagttgta 367
            |||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 1875 ctcacatcaccgagcagctgttcgggttctcgtcgctgaagtagttgta 1827



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                 
Query: 78   tcatctcttatgacat-ctatagataattactgtacctacactcgccttcaag 129
            ||||||||||||| |  ||||||||||||||| |||||||  |||||||||||
Sbjct: 2202 tcatctcttatgaaaaactatagataattactatacctaccttcgccttcaag 2150
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>dbj|AK105759.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D05, full
            insert sequence
          Length = 2027

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                             
Query: 319  ctcacatcaccgagcagctgttggggtcctcgtcgctgaagtagttgta 367
            |||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 1592 ctcacatcaccgagcagctgttcgggttctcgtcgctgaagtagttgta 1544



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                 
Query: 78   tcatctcttatgacat-ctatagataattactgtacctacactcgccttcaag 129
            ||||||||||||| |  ||||||||||||||| |||||||  |||||||||||
Sbjct: 1919 tcatctcttatgaaaaactatagataattactatacctaccttcgccttcaag 1867
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                                
Query: 319     ctcacatcaccgagcagctgttggggtcctcgtcgctgaagtagttgta 367
               |||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 2161242 ctcacatcaccgagcagctgttcgggttctcgtcgctgaagtagttgta 2161194



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                    
Query: 78      tcatctcttatgacat-ctatagataattactgtacctacactcgccttcaag 129
               ||||||||||||| |  ||||||||||||||| |||||||  |||||||||||
Sbjct: 2161569 tcatctcttatgaaaaactatagataattactatacctaccttcgccttcaag 2161517
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                                
Query: 319     ctcacatcaccgagcagctgttggggtcctcgtcgctgaagtagttgta 367
               |||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 2195157 ctcacatcaccgagcagctgtttgggttctcgtcgctgaagtagttgta 2195109



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                    
Query: 78      tcatctcttatgacat-ctatagataattactgtacctacactcgccttcaag 129
               ||||||||||||| |  ||||||||||||||| |||||||  |||||||||||
Sbjct: 2195489 tcatctcttatgaaaaactatagataattactatacctaccttcgccttcaag 2195437
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>emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb0077O07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132703

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                              
Query: 319   ctcacatcaccgagcagctgttggggtcctcgtcgctgaagtagttgta 367
             |||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 77437 ctcacatcaccgagcagctgtttgggttctcgtcgctgaagtagttgta 77389



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                  
Query: 78    tcatctcttatgacat-ctatagataattactgtacctacactcgccttcaag 129
             ||||||||||||| |  ||||||||||||||| |||||||  |||||||||||
Sbjct: 77769 tcatctcttatgaaaaactatagataattactatacctaccttcgccttcaag 77717
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>emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 125593

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                              
Query: 319   ctcacatcaccgagcagctgttggggtcctcgtcgctgaagtagttgta 367
             |||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 50155 ctcacatcaccgagcagctgttcgggttctcgtcgctgaagtagttgta 50107



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                  
Query: 78    tcatctcttatgacat-ctatagataattactgtacctacactcgccttcaag 129
             ||||||||||||| |  ||||||||||||||| |||||||  |||||||||||
Sbjct: 50482 tcatctcttatgaaaaactatagataattactatacctaccttcgccttcaag 50430
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>gb|AF264732.1|AF264732 Oryza sativa microsatellite 28CAC sequence
          Length = 500

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 48/50 (96%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                             
Query: 319 ctcacatcaccgagcagctgtt-ggggtcctcgtcgctgaagtagttgta 367
           |||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 100 ctcacatcaccgagcagctgttcggggttctcgtcgctgaagtagttgta 51



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 94  ctatagataattactgtacctacactcgccttcaag 129
           ||||||||||||||| |||||||  |||||||||||
Sbjct: 411 ctatagataattactatacctaccttcgccttcaag 376
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>gb|AY107379.1| Zea mays PCO087705 mRNA sequence
          Length = 506

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                 
Query: 320 tcacatcaccgagcagctgttggggtcctcgtcgctgaagtagttgtaaggctc 373
           ||||||||  ||||||||||||| || |||||||||||||  ||||||||||||
Sbjct: 78  tcacatcagtgagcagctgttggcgttctcgtcgctgaagatgttgtaaggctc 25
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>gb|BT019155.1| Zea mays clone Contig818.F mRNA sequence
          Length = 1093

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 319 ctcacatcaccgagcagctgttggggtcctcgtcgctgaa 358
           |||||||||||||||| | |||||||| ||||||||||||
Sbjct: 634 ctcacatcaccgagcacccgttggggttctcgtcgctgaa 595
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                      
Query: 320     tcacatcaccgagcagctgttggggtcctcgtcgctgaa 358
               ||||||||||||||||  |||||||| ||||||||||||
Sbjct: 2848338 tcacatcaccgagcaggcgttggggttctcgtcgctgaa 2848376
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                      
Query: 320     tcacatcaccgagcagctgttggggtcctcgtcgctgaa 358
               ||||||||||||||||  |||||||| ||||||||||||
Sbjct: 2848449 tcacatcaccgagcaggcgttggggttctcgtcgctgaa 2848487
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>gb|AC137635.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0038D20, from chromosome 3, complete sequence
          Length = 165395

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                     
Query: 320    tcacatcaccgagcagctgttggggtcctcgtcgctgaa 358
              ||||||||||||||||  |||||||| ||||||||||||
Sbjct: 120294 tcacatcaccgagcaggcgttggggttctcgtcgctgaa 120332
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>dbj|AK102357.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091H19, full
            insert sequence
          Length = 1401

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 320  tcacatcaccgagcagctgttggggtcctcgtcgctgaa 358
            ||||||||||||||||  |||||||| ||||||||||||
Sbjct: 1118 tcacatcaccgagcaggcgttggggttctcgtcgctgaa 1080
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>gb|AY109329.1| Zea mays CL1979_1 mRNA sequence
          Length = 2642

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 323  catcaccgagcagctgttggggtcctcgtcgctgaa 358
            |||||||||||| | |||||||| ||||||||||||
Sbjct: 2157 catcaccgagcacccgttggggttctcgtcgctgaa 2122
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>gb|AC116516.7| Mus musculus chromosome 1, clone RP24-336H7, complete sequence
          Length = 134253

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 265   attcatcatggccttcctttcaacc 289
             ||||||||||||||||||| |||||
Sbjct: 43436 attcatcatggccttccttgcaacc 43412
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>emb|AL157385.15| Human DNA sequence from clone RP11-129O7 on chromosome 10 Contains the
             3' end of the gene for HHGP protein (HHGP) (FLJ11888) and
             a pseudogene similar to part of NADH dehydrogenase 6
             (MTND6), complete sequence
          Length = 130647

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 193   ctaaattaatcaagaagaaacagaa 217
             |||||||||||||||||||| ||||
Sbjct: 25221 ctaaattaatcaagaagaaatagaa 25245
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 199     taatcaagaagaaacagaaga 219
               |||||||||||||||||||||
Sbjct: 2581840 taatcaagaagaaacagaaga 2581820
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 377     cgctggtggctgtggcggca 396
               ||||||||||||||||||||
Sbjct: 3228874 cgctggtggctgtggcggca 3228855
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>emb|CR722881.2|CNS0GKPZ Tetraodon nigroviridis full-length cDNA
          Length = 745

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 203 caagaagaaacagaagagga 222
           ||||||||||||||||||||
Sbjct: 369 caagaagaaacagaagagga 388
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>emb|CR318653.8| Zebrafish DNA sequence from clone DKEY-19B23 in linkage group 7, complete
              sequence
          Length = 235090

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 5      tattttgcatactgttcattgatc 28
              ||||||||||||||||| ||||||
Sbjct: 224254 tattttgcatactgttctttgatc 224231
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>gb|AC137077.26| Medicago truncatula clone mth2-8g15, complete sequence
          Length = 138303

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 195    aaattaatcaagaagaaaca 214
              ||||||||||||||||||||
Sbjct: 104077 aaattaatcaagaagaaaca 104058
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>ref|XM_783053.1| PREDICTED: Strongylocentrotus purpuratus similar to Nucleosome
           assembly protein 1-like 1 (NAP-1 related protein) (Brain
           protein DN38) (LOC583127), mRNA
          Length = 1263

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 taatcaagaagaaacagaag 218
           ||||||||||||||||||||
Sbjct: 887 taatcaagaagaaacagaag 906
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>emb|X65256.1|XLCFTRM X.laevis CFTR mRNA
          Length = 4455

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 203  caagaagaaacagaagagga 222
            ||||||||||||||||||||
Sbjct: 4417 caagaagaaacagaagagga 4436
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>gb|AC040965.8| Homo sapiens chromosome 8, clone RP11-481K20, complete sequence
          Length = 189188

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     tttgcatactgttcattgat 27
             ||||||||||||||||||||
Sbjct: 60129 tttgcatactgttcattgat 60110
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 319      ctcacatcaccgagcagctgttggggtcctcgtcgctgaa 358
                ||||||| || ||||||  |||||||| ||||||||||||
Sbjct: 15314374 ctcacatgacggagcaggcgttggggttctcgtcgctgaa 15314335
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>gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0046P18,
             complete sequence
          Length = 144720

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 319   ctcacatcaccgagcagctgttggggtcctcgtcgctgaa 358
             ||||||| || ||||||  |||||||| ||||||||||||
Sbjct: 31737 ctcacatgacggagcaggcgttggggttctcgtcgctgaa 31698
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>gb|AC093779.3| Homo sapiens BAC clone RP11-168E22 from 4, complete sequence
          Length = 59663

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   tgtagaagctaaattaatca 204
             ||||||||||||||||||||
Sbjct: 52816 tgtagaagctaaattaatca 52797
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>dbj|AB186487.1| Comamonas testosteroni degradation gene cluster (ORF genes and tesR
            gene), complete cds
          Length = 19590

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 240  tgttgctgccccatgtcactgcca 263
            ||||||||||||||| ||||||||
Sbjct: 3489 tgttgctgccccatgccactgcca 3512
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>gb|AY126275.1| Mamestra configurata nucleopolyhedrovirus B, complete genome
          Length = 158482

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   caagaagaaacagaagagga 222
             ||||||||||||||||||||
Sbjct: 24181 caagaagaaacagaagagga 24200
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>emb|AJ238093.1|HSA238093 Homo sapiens partial AF-4 gene, exons 2 to 7 and Alu repeat elements
          Length = 52909

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   tgtagaagctaaattaatca 204
             ||||||||||||||||||||
Sbjct: 46075 tgtagaagctaaattaatca 46056
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>emb|CT573502.2| Medicago truncatula chromosome 5 clone mte1-69f21, COMPLETE SEQUENCE
          Length = 89977

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   aaattaatcaagaagaaaca 214
             ||||||||||||||||||||
Sbjct: 79089 aaattaatcaagaagaaaca 79108
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>dbj|AP003177.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-314C6, complete
             sequence
          Length = 171621

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   agctaaattaatcaagaaga 210
             ||||||||||||||||||||
Sbjct: 54871 agctaaattaatcaagaaga 54890
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>dbj|AP003028.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-446B2, complete
              sequence
          Length = 176320

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 191    agctaaattaatcaagaaga 210
              ||||||||||||||||||||
Sbjct: 102416 agctaaattaatcaagaaga 102435
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>gb|U60209.1|XLU60209 Xenopus laevis cystic fibrosis transmembrane conductance regulator
            (CFTR) mRNA, partial cds
          Length = 4455

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 203  caagaagaaacagaagagga 222
            ||||||||||||||||||||
Sbjct: 4417 caagaagaaacagaagagga 4436
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 319      ctcacatcaccgagcagctgttggggtcctcgtcgctgaa 358
                ||||||| || ||||||  |||||||| ||||||||||||
Sbjct: 15322615 ctcacatgacggagcaggcgttggggttctcgtcgctgaa 15322576
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>gb|AY795849.1| Thuja occidentalis bark protein-like protein mRNA, complete cds
          Length = 1068

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 200 aatcaagaagaaacagaaga 219
           ||||||||||||||||||||
Sbjct: 54  aatcaagaagaaacagaaga 35
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>emb|AJ408921.1|HSA408921 Homo sapiens chromosomal breakpoint fragment derivative 4, AF4/MLL
           fusion, patient UPN026
          Length = 129

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 185 tgtagaagctaaattaatca 204
           ||||||||||||||||||||
Sbjct: 30  tgtagaagctaaattaatca 11
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>emb|AJ430604.1|HSA430604 Homo sapiens chromosomal breakpoint fragment derivative 4, AF4/MLL
           fusion, patient Ku
          Length = 459

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 185 tgtagaagctaaattaatca 204
           ||||||||||||||||||||
Sbjct: 215 tgtagaagctaaattaatca 196
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>emb|AJ430602.1|HSA430602 Homo sapiens chromosomal breakpoint fragment derivative 4, MLL/AF4
           fusion, patient La
          Length = 462

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 185 tgtagaagctaaattaatca 204
           ||||||||||||||||||||
Sbjct: 154 tgtagaagctaaattaatca 135
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>dbj|D21877.1|SUHNAPH Hemicentrotus pulcherrimus mRNA for Nucleosome assembly protein
           homologue, complete cds
          Length = 3412

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 199 taatcaagaagaaacagaag 218
           ||||||||||||||||||||
Sbjct: 970 taatcaagaagaaacagaag 989


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,341,764
Number of Sequences: 3902068
Number of extensions: 4341764
Number of successful extensions: 88644
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88224
Number of HSP's gapped (non-prelim): 419
length of query: 461
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 439
effective length of database: 17,147,199,772
effective search space: 7527620699908
effective search space used: 7527620699908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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