| Clone Name | rbast21c02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY728143.1| Homo sapiens tumor amplified and overexpressed sequence 2 (TMEM16A) mRNA, complete cds Length = 4814 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 313 caacaaacaaatggaagcagag 334 |||||||||||||||||||||| Sbjct: 1756 caacaaacaaatggaagcagag 1777
>ref|XM_849396.1| PREDICTED: Canis familiaris similar to transmembrane protein 16A (LOC611698), mRNA Length = 3114 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 313 caacaaacaaatggaagcagag 334 |||||||||||||||||||||| Sbjct: 1628 caacaaacaaatggaagcagag 1649
>dbj|AP000879.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-805J14, complete sequence Length = 169725 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 313 caacaaacaaatggaagcagag 334 |||||||||||||||||||||| Sbjct: 81482 caacaaacaaatggaagcagag 81503
>emb|AL833582.1|HSM804895 Homo sapiens mRNA; cDNA DKFZp686O1156 (from clone DKFZp686O1156) Length = 4558 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 313 caacaaacaaatggaagcagag 334 |||||||||||||||||||||| Sbjct: 1500 caacaaacaaatggaagcagag 1521
>gb|AC161192.12| Mus musculus chromosome 5, clone RP23-382I10, complete sequence Length = 214985 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 aaacaaatggaagcagagcaa 337 ||||||||||||||||||||| Sbjct: 170140 aaacaaatggaagcagagcaa 170160
>gb|AC138641.10| Mus musculus chromosome 5, clone RP23-466K15, complete sequence Length = 175628 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 317 aaacaaatggaagcagagcaa 337 ||||||||||||||||||||| Sbjct: 133948 aaacaaatggaagcagagcaa 133928
>emb|CT025598.9| Mouse DNA sequence from clone RP23-218L3 on chromosome 13, complete sequence Length = 228266 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 gtcatctgccactgtgtctgt 422 ||||||||||||||||||||| Sbjct: 6960 gtcatctgccactgtgtctgt 6940
>gb|AC154822.2| Mus musculus BAC clone RP24-537L18 from 13, complete sequence Length = 167628 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 402 gtcatctgccactgtgtctgt 422 ||||||||||||||||||||| Sbjct: 1348 gtcatctgccactgtgtctgt 1368
>gb|AC152961.2| Mus musculus 6 BAC RP23-4H14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 227467 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 aaaggaagaactgtgtagtat 53 ||||||||||||||||||||| Sbjct: 127643 aaaggaagaactgtgtagtat 127623
>gb|AC090900.3| Drosophila melanogaster clone BACR30C07, complete sequence Length = 186286 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 atgccaagacaaaaaggaag 40 |||||||||||||||||||| Sbjct: 131700 atgccaagacaaaaaggaag 131719
>gb|BC061876.1| Rattus norvegicus popeye domain containing 2, mRNA (cDNA clone MGC:72601 IMAGE:5599130), complete cds Length = 2243 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 tgaggaggtttcgggatcag 266 |||||||||||||||||||| Sbjct: 1469 tgaggaggtttcgggatcag 1488
>gb|AY490241.1| Rattus norvegicus popeye domain containing 2 (Popdc2) mRNA, complete cds Length = 2159 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 tgaggaggtttcgggatcag 266 |||||||||||||||||||| Sbjct: 1432 tgaggaggtttcgggatcag 1451
>emb|AL136363.4| Human DNA sequence from clone RP6-43L17 on chromosome Xq21.1-21.33, complete sequence Length = 93296 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 aacaaagttttgacttgctt 80 |||||||||||||||||||| Sbjct: 85334 aacaaagttttgacttgctt 85315
>gb|AC074269.8| Homo sapiens 3 BAC RP11-485H21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 182853 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 21 atgccaagacaaaaaggaagaact 44 ||||||||| |||||||||||||| Sbjct: 137293 atgccaagagaaaaaggaagaact 137316
>gb|AC182012.3| Otolemur garnettii clone CH256-376P14, complete sequence Length = 224337 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 aacaaacaaatggaagcaga 333 |||||||||||||||||||| Sbjct: 105491 aacaaacaaatggaagcaga 105510
>gb|AC154564.3| Mus musculus BAC clone RP23-402A16 from chromosome 16, complete sequence Length = 214128 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cctcaatctacaagtctgaa 137 |||||||||||||||||||| Sbjct: 58741 cctcaatctacaagtctgaa 58722
>gb|AC005168.3| Arabidopsis thaliana chromosome 2 clone F12C20 map B68, complete sequence Length = 87978 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 308 agcaacaacaaacaaatggaagca 331 ||||||||||||| |||||||||| Sbjct: 15947 agcaacaacaaaccaatggaagca 15924
>ref|NM_199113.1| Rattus norvegicus popeye domain containing 2 (Popdc2), mRNA Length = 2243 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 tgaggaggtttcgggatcag 266 |||||||||||||||||||| Sbjct: 1469 tgaggaggtttcgggatcag 1488
>emb|AL928824.13| Zebrafish DNA sequence from clone CH211-105D18 in linkage group 6, complete sequence Length = 189742 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 cttagcaacaacaaacaaat 324 |||||||||||||||||||| Sbjct: 32258 cttagcaacaacaaacaaat 32239
>gb|AF223252.1|AF223252 Trichoderma harzianum cellobiohydrolase (cbh1) gene, complete cds Length = 1698 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ttgcacacctcaacaaggtt 20 |||||||||||||||||||| Sbjct: 120 ttgcacacctcaacaaggtt 139
>gb|AE003811.3| Drosophila melanogaster chromosome 2R, section 39 of 73 of the complete sequence Length = 255652 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 atgccaagacaaaaaggaag 40 |||||||||||||||||||| Sbjct: 845 atgccaagacaaaaaggaag 864
>gb|AC004766.1|AC004766 Drosophila melanogaster DNA sequence (P1s DS08108 (D156) and DS09214 (D202)), complete sequence Length = 93932 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 atgccaagacaaaaaggaag 40 |||||||||||||||||||| Sbjct: 70913 atgccaagacaaaaaggaag 70894 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,880,790 Number of Sequences: 3902068 Number of extensions: 3880790 Number of successful extensions: 105977 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105932 Number of HSP's gapped (non-prelim): 45 length of query: 423 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 401 effective length of database: 17,147,199,772 effective search space: 6876027108572 effective search space used: 6876027108572 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)