ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast21c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY728143.1| Homo sapiens tumor amplified and overexpressed se... 44 0.36
2ref|XM_849396.1| PREDICTED: Canis familiaris similar to transmem... 44 0.36
3dbj|AP000879.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 44 0.36
4emb|AL833582.1|HSM804895 Homo sapiens mRNA; cDNA DKFZp686O1156 (... 44 0.36
5gb|AC161192.12| Mus musculus chromosome 5, clone RP23-382I10, co... 42 1.4
6gb|AC138641.10| Mus musculus chromosome 5, clone RP23-466K15, co... 42 1.4
7emb|CT025598.9| Mouse DNA sequence from clone RP23-218L3 on chro... 42 1.4
8gb|AC154822.2| Mus musculus BAC clone RP24-537L18 from 13, compl... 42 1.4
9gb|AC152961.2| Mus musculus 6 BAC RP23-4H14 (Roswell Park Cancer... 42 1.4
10gb|AC090900.3| Drosophila melanogaster clone BACR30C07, complete... 40 5.7
11gb|BC061876.1| Rattus norvegicus popeye domain containing 2, mRN... 40 5.7
12gb|AY490241.1| Rattus norvegicus popeye domain containing 2 (Pop... 40 5.7
13emb|AL136363.4| Human DNA sequence from clone RP6-43L17 on chrom... 40 5.7
14gb|AC074269.8| Homo sapiens 3 BAC RP11-485H21 (Roswell Park Canc... 40 5.7
15gb|AC182012.3| Otolemur garnettii clone CH256-376P14, complete s... 40 5.7
16gb|AC154564.3| Mus musculus BAC clone RP23-402A16 from chromosom... 40 5.7
17gb|AC005168.3| Arabidopsis thaliana chromosome 2 clone F12C20 ma... 40 5.7
18ref|NM_199113.1| Rattus norvegicus popeye domain containing 2 (P... 40 5.7
19emb|AL928824.13| Zebrafish DNA sequence from clone CH211-105D18 ... 40 5.7
20gb|AF223252.1|AF223252 Trichoderma harzianum cellobiohydrolase (... 40 5.7
21gb|AE003811.3| Drosophila melanogaster chromosome 2R, section 39... 40 5.7
22gb|AC004766.1|AC004766 Drosophila melanogaster DNA sequence (P1s... 40 5.7

>gb|AY728143.1| Homo sapiens tumor amplified and overexpressed sequence 2 (TMEM16A)
            mRNA, complete cds
          Length = 4814

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 313  caacaaacaaatggaagcagag 334
            ||||||||||||||||||||||
Sbjct: 1756 caacaaacaaatggaagcagag 1777



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>ref|XM_849396.1| PREDICTED: Canis familiaris similar to transmembrane protein 16A
            (LOC611698), mRNA
          Length = 3114

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 313  caacaaacaaatggaagcagag 334
            ||||||||||||||||||||||
Sbjct: 1628 caacaaacaaatggaagcagag 1649



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>dbj|AP000879.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-805J14, complete
             sequence
          Length = 169725

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 313   caacaaacaaatggaagcagag 334
             ||||||||||||||||||||||
Sbjct: 81482 caacaaacaaatggaagcagag 81503



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>emb|AL833582.1|HSM804895 Homo sapiens mRNA; cDNA DKFZp686O1156 (from clone DKFZp686O1156)
          Length = 4558

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 313  caacaaacaaatggaagcagag 334
            ||||||||||||||||||||||
Sbjct: 1500 caacaaacaaatggaagcagag 1521



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>gb|AC161192.12| Mus musculus chromosome 5, clone RP23-382I10, complete sequence
          Length = 214985

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 317    aaacaaatggaagcagagcaa 337
              |||||||||||||||||||||
Sbjct: 170140 aaacaaatggaagcagagcaa 170160



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>gb|AC138641.10| Mus musculus chromosome 5, clone RP23-466K15, complete sequence
          Length = 175628

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 317    aaacaaatggaagcagagcaa 337
              |||||||||||||||||||||
Sbjct: 133948 aaacaaatggaagcagagcaa 133928



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>emb|CT025598.9| Mouse DNA sequence from clone RP23-218L3 on chromosome 13, complete
            sequence
          Length = 228266

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 402  gtcatctgccactgtgtctgt 422
            |||||||||||||||||||||
Sbjct: 6960 gtcatctgccactgtgtctgt 6940



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>gb|AC154822.2| Mus musculus BAC clone RP24-537L18 from 13, complete sequence
          Length = 167628

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 402  gtcatctgccactgtgtctgt 422
            |||||||||||||||||||||
Sbjct: 1348 gtcatctgccactgtgtctgt 1368



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>gb|AC152961.2| Mus musculus 6 BAC RP23-4H14 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 227467

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 33     aaaggaagaactgtgtagtat 53
              |||||||||||||||||||||
Sbjct: 127643 aaaggaagaactgtgtagtat 127623



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>gb|AC090900.3| Drosophila melanogaster clone BACR30C07, complete sequence
          Length = 186286

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     atgccaagacaaaaaggaag 40
              ||||||||||||||||||||
Sbjct: 131700 atgccaagacaaaaaggaag 131719



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>gb|BC061876.1| Rattus norvegicus popeye domain containing 2, mRNA (cDNA clone
            MGC:72601 IMAGE:5599130), complete cds
          Length = 2243

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 247  tgaggaggtttcgggatcag 266
            ||||||||||||||||||||
Sbjct: 1469 tgaggaggtttcgggatcag 1488



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>gb|AY490241.1| Rattus norvegicus popeye domain containing 2 (Popdc2) mRNA, complete
            cds
          Length = 2159

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 247  tgaggaggtttcgggatcag 266
            ||||||||||||||||||||
Sbjct: 1432 tgaggaggtttcgggatcag 1451



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>emb|AL136363.4| Human DNA sequence from clone RP6-43L17 on chromosome Xq21.1-21.33,
             complete sequence
          Length = 93296

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    aacaaagttttgacttgctt 80
             ||||||||||||||||||||
Sbjct: 85334 aacaaagttttgacttgctt 85315



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>gb|AC074269.8| Homo sapiens 3 BAC RP11-485H21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 182853

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 21     atgccaagacaaaaaggaagaact 44
              ||||||||| ||||||||||||||
Sbjct: 137293 atgccaagagaaaaaggaagaact 137316



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>gb|AC182012.3| Otolemur garnettii clone CH256-376P14, complete sequence
          Length = 224337

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 314    aacaaacaaatggaagcaga 333
              ||||||||||||||||||||
Sbjct: 105491 aacaaacaaatggaagcaga 105510



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>gb|AC154564.3| Mus musculus BAC clone RP23-402A16 from chromosome 16, complete
             sequence
          Length = 214128

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   cctcaatctacaagtctgaa 137
             ||||||||||||||||||||
Sbjct: 58741 cctcaatctacaagtctgaa 58722



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>gb|AC005168.3| Arabidopsis thaliana chromosome 2 clone F12C20 map B68, complete
             sequence
          Length = 87978

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 308   agcaacaacaaacaaatggaagca 331
             ||||||||||||| ||||||||||
Sbjct: 15947 agcaacaacaaaccaatggaagca 15924



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>ref|NM_199113.1| Rattus norvegicus popeye domain containing 2 (Popdc2), mRNA
          Length = 2243

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 247  tgaggaggtttcgggatcag 266
            ||||||||||||||||||||
Sbjct: 1469 tgaggaggtttcgggatcag 1488



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>emb|AL928824.13| Zebrafish DNA sequence from clone CH211-105D18 in linkage group 6,
             complete sequence
          Length = 189742

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 305   cttagcaacaacaaacaaat 324
             ||||||||||||||||||||
Sbjct: 32258 cttagcaacaacaaacaaat 32239



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>gb|AF223252.1|AF223252 Trichoderma harzianum cellobiohydrolase (cbh1) gene, complete cds
          Length = 1698

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   ttgcacacctcaacaaggtt 20
           ||||||||||||||||||||
Sbjct: 120 ttgcacacctcaacaaggtt 139



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>gb|AE003811.3| Drosophila melanogaster chromosome 2R, section 39 of 73 of the
           complete sequence
          Length = 255652

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 21  atgccaagacaaaaaggaag 40
           ||||||||||||||||||||
Sbjct: 845 atgccaagacaaaaaggaag 864



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>gb|AC004766.1|AC004766 Drosophila melanogaster DNA sequence (P1s DS08108 (D156) and DS09214
             (D202)), complete sequence
          Length = 93932

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    atgccaagacaaaaaggaag 40
             ||||||||||||||||||||
Sbjct: 70913 atgccaagacaaaaaggaag 70894


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,880,790
Number of Sequences: 3902068
Number of extensions: 3880790
Number of successful extensions: 105977
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105932
Number of HSP's gapped (non-prelim): 45
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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