ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast21b06 |
|---|---|
| Clone Library Name | barley_pub |
>FLBA_EMENI (P38093) Developmental regulator flbA| Length = 719 Score = 33.5 bits (75), Expect = 0.29 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Frame = +1 Query: 130 HTTTEYKHDHTVPTASSIQSLA*LWFHPLQNVAEATDPSFILATCTTNSSSCPH--ARDI 303 H K+DHT + +I +L L F + + DPS I+ T TT + S AR + Sbjct: 249 HRVRFTKYDHTFTSEEAINNLGSLKFSQSNRMPDPKDPSRIVTTTTTTTFSMAKEMARSV 308 Query: 304 C 306 C Sbjct: 309 C 309
>MATK_LEPPR (Q8MEX8) Maturase K (Intron maturase)| Length = 514 Score = 32.7 bits (73), Expect = 0.50 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Frame = +1 Query: 208 HPLQNVAEATDPSFILATCTTNSSSCPHARDICAVRRPH*QEPSITTSCHEQLI-EAPKI 384 HPL+ E T I + PH+ I +R PH P I + I +AP + Sbjct: 115 HPLEEXNEWTSFRSIHSIFPLMEDKIPHSNFILDIRIPHLTHPEILVRTFRRWIQDAPSL 174 Query: 385 PTVCPILHRTIQQKVVHRSVRAALNVGQRVL 477 ++ +LH HR++ + N+ Q +L Sbjct: 175 HSLRSVLHE-------HRNLIISSNLDQLIL 198
>LAMA1_HUMAN (P25391) Laminin alpha-1 chain precursor (Laminin A chain)| Length = 3075 Score = 30.8 bits (68), Expect = 1.9 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 4/70 (5%) Frame = -2 Query: 380 FGASMSCSWQLVVIDGSCQCGLRTAQMSLACGQDEELV---VHVAKMKEGSVASATFCSG 210 +G + SC W CQC T CG+ H + G+V+S C Sbjct: 273 YGHASSCPWDETTKKLQCQCEHNT------CGESCNRCCPGYHQQPWRPGTVSSGNTCEA 326 Query: 209 *N-HSYAKDC 183 N H+ AKDC Sbjct: 327 CNCHNKAKDC 336
>MATK_DIOSP (Q8MEY1) Maturase K (Intron maturase)| Length = 514 Score = 30.8 bits (68), Expect = 1.9 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Frame = +1 Query: 208 HPLQNVAEATDPSFILATCTTNSSSCPHARDICAVRRPH*QEPSITTSCHEQLI-EAPKI 384 H L+ + E T I + PH+ I +R PH P I + I +AP + Sbjct: 115 HSLERMNEWTSFRSIHSILPLMEDKIPHSNFILDIRIPHLTHPEILVRTFRRWIQDAPSL 174 Query: 385 PTVCPILHRTIQQKVVHRSVRAALNVGQRVL 477 ++ +LH HR++ + N+ Q +L Sbjct: 175 HSLRSVLHE-------HRNLIISSNLDQLIL 198
>MATK_DIOED (Q8MEY2) Maturase K (Intron maturase)| Length = 505 Score = 30.4 bits (67), Expect = 2.5 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Frame = +1 Query: 208 HPLQNVAEATDPSFILATCTTNSSSCPHARDICAVRRPH*QEPSITTSCHEQLI-EAPKI 384 H L+ + E T I + PH+ I +R PH P I + I +AP + Sbjct: 115 HSLERMNEWTSFRSIHSIFPLMEDKIPHSNFILDIRIPHLTHPEILVRTFRRWIQDAPSL 174 Query: 385 PTVCPILHRTIQQKVVHRSVRAALNVGQRVL 477 ++ +LH HR++ + N+ Q +L Sbjct: 175 HSLRSVLHE-------HRNLIISSNLDQLIL 198
>MATK_ENCAL (Q8MEY0) Maturase K (Intron maturase)| Length = 514 Score = 30.4 bits (67), Expect = 2.5 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Frame = +1 Query: 208 HPLQNVAEATDPSFILATCTTNSSSCPHARDICAVRRPH*QEPSITTSCHEQLI-EAPKI 384 H L+ + E T I + PH+ I +R PH P I + I +AP + Sbjct: 115 HSLERMNEWTSFRSIHSIFPLMEDKIPHSNFILDIRIPHLTHPEILVRTFRRWIQDAPSL 174 Query: 385 PTVCPILHRTIQQKVVHRSVRAALNVGQRVL 477 ++ +LH HR++ + N+ Q +L Sbjct: 175 HSLRSVLHE-------HRNLIISSNLDQLIL 198
>LAMA1_MOUSE (P19137) Laminin alpha-1 chain precursor (Laminin A chain)| Length = 3084 Score = 29.6 bits (65), Expect = 4.2 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 4/70 (5%) Frame = -2 Query: 380 FGASMSCSWQLVVIDGSCQCGLRTAQMSLACGQDEELV---VHVAKMKEGSVASATFCSG 210 +G + SC W CQC T CG+ + H + G+++S C Sbjct: 280 YGHASSCPWDEEAKQLQCQCEHNT------CGESCDRCCPGYHQQPWRPGTISSGNECEE 333 Query: 209 *N-HSYAKDC 183 N H+ AKDC Sbjct: 334 CNCHNKAKDC 343
>TAZ_DROME (Q9V6G5) Tafazzin homolog| Length = 378 Score = 29.6 bits (65), Expect = 4.2 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 7/42 (16%) Frame = +1 Query: 364 LIEAPKIPTVCPILHR-------TIQQKVVHRSVRAALNVGQ 468 + E+PKIP + P+ H ++ V+ R + LNVGQ Sbjct: 289 IYESPKIPIILPMWHEGMDDLLPNVEPYVIQRGKQVTLNVGQ 330
>MDR10_ARATH (Q9SGY1) Multidrug resistance protein 10 (P-glycoprotein 10)| Length = 1316 Score = 29.6 bits (65), Expect = 4.2 Identities = 16/61 (26%), Positives = 31/61 (50%) Frame = -2 Query: 281 DEELVVHVAKMKEGSVASATFCSG*NHSYAKDCMLLAVGTVWSCLYSVVVCRLYIMIGCM 102 D +V A KE S +F + + DC+L+A+G++ +C++ V +I G + Sbjct: 6 DPAIVDMAAAEKEKKRPSVSFLKLFSFADFYDCVLMALGSIGACIHGASVPVFFIFFGKL 65 Query: 101 L 99 + Sbjct: 66 I 66
>DPYD_PIG (Q28943) Dihydropyrimidine dehydrogenase [NADP+] precursor (EC| 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 29.6 bits (65), Expect = 4.2 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -2 Query: 332 SCQCGLRTAQMSLACGQDEELVVHVAK 252 SC G+ M LACGQD ELV ++ + Sbjct: 670 SCPHGMGERGMGLACGQDPELVRNICR 696
>DPYD_HUMAN (Q12882) Dihydropyrimidine dehydrogenase [NADP+] precursor (EC| 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 29.6 bits (65), Expect = 4.2 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -2 Query: 332 SCQCGLRTAQMSLACGQDEELVVHVAK 252 SC G+ M LACGQD ELV ++ + Sbjct: 670 SCPHGMGERGMGLACGQDPELVRNICR 696
>DPYD_BOVIN (Q28007) Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) (DPD)| (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 29.6 bits (65), Expect = 4.2 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -2 Query: 332 SCQCGLRTAQMSLACGQDEELVVHVAK 252 SC G+ M LACGQD ELV ++ + Sbjct: 670 SCPHGMGERGMGLACGQDPELVRNICR 696
>RCEM_RHOCA (P11847) Reaction center protein M chain (Photosynthetic reaction| center M subunit) Length = 306 Score = 29.3 bits (64), Expect = 5.5 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +2 Query: 236 PILLSSWPHAPPILHLAHMQGTFVLSADH 322 PIL+ SW APP +H+ T S DH Sbjct: 163 PILMGSWSVAPPYGIFSHLDWTNQFSLDH 191
>EDG5_MOUSE (P52592) Sphingosine 1-phosphate receptor Edg-5 (S1P receptor| Edg-5) (Lysophospholipid receptor B2) (Endothelial differentiation G-protein coupled receptor 5) (Sphingosine 1-phosphate receptor 2) (S1P2) Length = 352 Score = 28.5 bits (62), Expect = 9.4 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Frame = -1 Query: 189 RLYAASSGNRMVMFIFCCCMSSLYNDWVHVGGWSLINTLGHMPDVMCLLSTRI*LC---L 19 +LY + RM+M I + SL + + GW+ +N L V+ L + LC + Sbjct: 138 KLYGSDKSCRMLMLIGASWLISLILGGLPILGWNCLNQLEACSTVLPLYAKHYVLCVVTI 197 Query: 18 YIVLLL 1 + V+LL Sbjct: 198 FSVILL 203
>AMT1_CAEEL (P54145) Putative ammonium transporter 1| Length = 534 Score = 28.5 bits (62), Expect = 9.4 Identities = 11/34 (32%), Positives = 16/34 (47%) Frame = -3 Query: 358 HGSWWLLMVLVNVVCGQHKCPLHVGKMKNWWCMW 257 HG W LL+ + + G KM+ W C+W Sbjct: 288 HGKWTLLLTINACLSGMVAACAGCNKMEPWACIW 321
>YAB9_SCHPO (Q09809) Hypothetical protein C2G11.09 in chromosome I| Length = 796 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/44 (29%), Positives = 25/44 (56%) Frame = +3 Query: 15 YISTIIYEYSTSTLHQAYDPRCLLNSSLQHAPNHYIETTYNNRI 146 ++ST+I+ T+ AY+ ++ SS+Q +YI T +N + Sbjct: 718 WLSTVIFPLLCFTVISAYNFSTMIRSSMQFVSLYYIRTHQSNTL 761
>R1AB_CVH22 (Q05002) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; 3C-like proteinase (EC 3.4 Length = 6758 Score = 28.5 bits (62), Expect = 9.4 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 4/108 (3%) Frame = -2 Query: 416 MVRCRMGQTVGIFGASMSCSWQL--VVIDGSCQCGLRTAQMSLACGQDEELVVHVAKMKE 243 ++ C G G+FG +M +W + I+G+C + +L G+ E + +H ++ Sbjct: 3078 ILACYDGCAQGVFGVNMRTNWTIRGSFINGAC----GSPGYNLKNGEVEFVYMHQIELGS 3133 Query: 242 GSVASATFCSG*NHSYAKDCMLLAVGTVWSCLYSVVVCRLY--IMIGC 105 GS ++F G + +D L V + L VV LY I+ GC Sbjct: 3134 GSHVGSSF-DGVMYGGFEDQPNLQVESANQMLTVNVVAFLYAAILNGC 3180 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,065,652 Number of Sequences: 219361 Number of extensions: 1623298 Number of successful extensions: 4212 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4078 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4204 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
