ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbast21a11 |
|---|---|
| Clone Library Name | barley_pub |
>Y3136_ARATH (Q9LIG0) Clavaminate synthase-like protein At3g21360 (EC 1.-.-.-)| Length = 330 Score = 162 bits (410), Expect = 4e-40 Identities = 73/88 (82%), Positives = 80/88 (90%) Frame = -2 Query: 448 DESRGRKIWFNSMVAAYTGWKDARNDPVKAVTFGDGSPLPADVIEACGKILEEECVAVPW 269 DESR RK+WFNSMVAAYTGW+D RNDP KAVTFGDG PLPAD++ C +ILEEECVAVPW Sbjct: 239 DESRNRKVWFNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEECVAVPW 298 Query: 268 QQGDVLLIDNWAVLHSRRSFEPPRRVLA 185 Q+GDVLLIDNWAVLHSRR F+PPRRVLA Sbjct: 299 QRGDVLLIDNWAVLHSRRPFDPPRRVLA 326
>CAS1_STRCL (Q05581) Clavaminate synthase 1 (EC 1.14.11.21) (Clavaminic acid| synthetase 1) (CAS1) (CS1) Length = 323 Score = 36.6 bits (83), Expect = 0.030 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = -2 Query: 337 PLPADVIEACGKILEEECVAVPWQQGDVLLIDNWAVLHSRRSFEP 203 P + + A K L+E AV + GD+L++DN+ H+R F P Sbjct: 241 PADKEAVAALSKALDEVTEAVYLEPGDLLIVDNFRTTHARTPFSP 285
>HMCT_BOMMO (P98092) Hemocytin precursor (Humoral lectin)| Length = 3133 Score = 35.8 bits (81), Expect = 0.050 Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 2/94 (2%) Frame = -3 Query: 447 MRAGGGRYGSTAWLPPTRGGRTPVTIQLRPSPSAMARPCPPMS*RHAARSWK--RNVSRS 274 MRAG GR + L R P +++ P+P+ C P + SWK R S Sbjct: 2722 MRAGRGRRPALRGLRAALRDRLPTRLEVLPAPAECCGRCKP-----SPASWKGGRGPSGR 2776 Query: 273 HGSKVTSFSSTTGQCCTHGGLSSLHGAYLLPSVN 172 + S T+ CT+ + LHG + S N Sbjct: 2777 ARERPVGESWTSADFCTNYTCADLHGTLQVQSSN 2810
>BODG_RAT (Q9QZU7) Gamma-butyrobetaine dioxygenase (EC 1.14.11.1)| (Gamma-butyrobetaine,2-oxoglutarate dioxygenase) (Gamma-butyrobetaine hydroxylase) (Gamma-BBH) Length = 387 Score = 33.1 bits (74), Expect = 0.33 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -2 Query: 262 GDVLLIDNWAVLHSRRSFE 206 GDV+ DNW +LH RRS+E Sbjct: 335 GDVITFDNWRLLHGRRSYE 353
>BODG_MOUSE (Q924Y0) Gamma-butyrobetaine dioxygenase (EC 1.14.11.1)| (Gamma-butyrobetaine,2-oxoglutarate dioxygenase) (Gamma-butyrobetaine hydroxylase) (Gamma-BBH) Length = 387 Score = 33.1 bits (74), Expect = 0.33 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -2 Query: 262 GDVLLIDNWAVLHSRRSFE 206 GDV+ DNW +LH RRS+E Sbjct: 335 GDVITFDNWRLLHGRRSYE 353
>BODG_HUMAN (O75936) Gamma-butyrobetaine dioxygenase (EC 1.14.11.1)| (Gamma-butyrobetaine,2-oxoglutarate dioxygenase) (Gamma-butyrobetaine hydroxylase) (Gamma-BBH) Length = 387 Score = 33.1 bits (74), Expect = 0.33 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -2 Query: 262 GDVLLIDNWAVLHSRRSFE 206 GDV+ DNW +LH RRS+E Sbjct: 335 GDVITFDNWRLLHGRRSYE 353
>CAS2_STRCL (Q05582) Clavaminate synthase 2 (EC 1.14.11.21) (Clavaminic acid| synthetase 2) (CAS2) (CS2) Length = 324 Score = 33.1 bits (74), Expect = 0.33 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = -2 Query: 337 PLPADVIEACGKILEEECVAVPWQQGDVLLIDNWAVLHSRRSFEP 203 P + + + L++ V V GDVL+IDN+ H+R F P Sbjct: 242 PADKEAVAHLSQALDDVTVGVKLVPGDVLIIDNFRTTHARTPFSP 286
>TMLH_RAT (Q91ZW6) Trimethyllysine dioxygenase, mitochondrial precursor (EC| 1.14.11.8) (Epsilon-trimethyllysine 2-oxoglutarate dioxygenase) (TML-alpha-ketoglutarate dioxygenase) (TML hydroxylase) (TML dioxygenase) (TMLD) Length = 405 Score = 32.3 bits (72), Expect = 0.56 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = -2 Query: 277 VPWQQGDVLLIDNWAVLHSRRSFEPPRRV 191 V + G VL IDNW VLH R SF R++ Sbjct: 356 VKLKPGKVLFIDNWRVLHGRESFTGYRQL 384
>TMLH_MOUSE (Q91ZE0) Trimethyllysine dioxygenase, mitochondrial precursor (EC| 1.14.11.8) (Epsilon-trimethyllysine 2-oxoglutarate dioxygenase) (TML-alpha-ketoglutarate dioxygenase) (TML hydroxylase) (TML dioxygenase) (TMLD) Length = 421 Score = 32.3 bits (72), Expect = 0.56 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = -2 Query: 277 VPWQQGDVLLIDNWAVLHSRRSFEPPRRV 191 V + G VL IDNW VLH R SF R++ Sbjct: 372 VKLKPGKVLFIDNWRVLHGRESFTGYRQL 400
>TMLH_NEUCR (Q96UB1) Trimethyllysine dioxygenase (EC 1.14.11.8)| (Epsilon-trimethyllysine 2-oxoglutarate dioxygenase) (TML-alpha-ketoglutarate dioxygenase) (TML hydroxylase) (TML dioxygenase) (TMLD) Length = 471 Score = 32.0 bits (71), Expect = 0.73 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 5/67 (7%) Frame = -2 Query: 376 NDPVKAVTFGDGSPLPADVIEACGK---ILEEEC--VAVPWQQGDVLLIDNWAVLHSRRS 212 ND V FG+ P++ EA K IL + + V + G L+ DNW VLH R + Sbjct: 376 NDDRGVVPFGEKYS-PSEWYEAARKWDGILRRKSSELWVQLEPGKPLIFDNWRVLHGRSA 434 Query: 211 FEPPRRV 191 F RR+ Sbjct: 435 FSGIRRI 441
>WNK4_MOUSE (Q80UE6) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1)| (Protein kinase with no lysine 4) (Protein kinase, lysine-deficient 4) Length = 1222 Score = 31.2 bits (69), Expect = 1.2 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Frame = -3 Query: 408 LPPTRGGRTPVTIQLRPSPSAMARPCP--PMS*RHAARSWKRNVSRSHGSKVTSFSSTTG 235 LPP G P T+ L P P + P P P + +H + ++ S+SSTT Sbjct: 530 LPPD-SGPPPATVSLAPGPPSAFPPEPEEPEADQHQSFLFRH----------ASYSSTTS 578 Query: 234 QCCTHGGLSS 205 C T G LSS Sbjct: 579 DCETDGYLSS 588
>VL2_HPV45 (P36761) Minor capsid protein L2| Length = 463 Score = 30.4 bits (67), Expect = 2.1 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 1/103 (0%) Frame = -3 Query: 438 GGGRYGSTAWLPPTRGGRTPVTIQLRPS-PSAMARPCPPMS*RHAARSWKRNVSRSHGSK 262 G G G T ++P GGR+ + + P+ P + P P +V S G+ Sbjct: 62 GSGSGGRTGYVP--LGGRSNTVVDVGPTRPPVVIEPVGPTDPSIVTLVEDSSVVAS-GAP 118 Query: 261 VTSFSSTTGQCCTHGGLSSLHGAYLLPSVNSVNVRH*SLRDKA 133 V +F+ T+G T G ++ + P+V+SV++ S + A Sbjct: 119 VPTFTGTSGFEITSSGTTTPAVLDITPTVDSVSISSTSFTNPA 161
>WNK4_RAT (Q7TPK6) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1)| (Protein kinase with no lysine 4) (Protein kinase, lysine-deficient 4) Length = 1222 Score = 30.4 bits (67), Expect = 2.1 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Frame = -3 Query: 408 LPPTRGGRTPVTIQLRPSPSAMARPCP--PMS*RHAARSWKRNVSRSHGSKVTSFSSTTG 235 LPP G P T+ + P P + P P P + +H + ++ S+SSTT Sbjct: 530 LPPD-SGPPPATVSMTPGPPSAFPPEPEEPEADQHQSFLFRH----------ASYSSTTS 578 Query: 234 QCCTHGGLSS 205 C T G LSS Sbjct: 579 DCETDGYLSS 588
>TMLH_HUMAN (Q9NVH6) Trimethyllysine dioxygenase, mitochondrial precursor (EC| 1.14.11.8) (Epsilon-trimethyllysine 2-oxoglutarate dioxygenase) (TML-alpha-ketoglutarate dioxygenase) (TML hydroxylase) (TML dioxygenase) (TMLD) Length = 421 Score = 30.0 bits (66), Expect = 2.8 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -2 Query: 277 VPWQQGDVLLIDNWAVLHSRRSFEPPRRV 191 V + G VL IDNW VLH R F R++ Sbjct: 372 VKLKPGRVLFIDNWRVLHGRECFTGYRQL 400
>WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1)| (Protein kinase with no lysine 4) (Protein kinase, lysine-deficient 4) Length = 1243 Score = 29.6 bits (65), Expect = 3.6 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Frame = -3 Query: 402 PTRGGRTPVTIQLRPSPSAMARPCP--PMS*RHAARSWKRNVSRSHGSKVTSFSSTTGQC 229 P G P T+ + P P ++ P P P + +H ++ S+SSTT C Sbjct: 534 PPEPGPPPATVPMAPGPPSVFPPEPEEPEADQHQPFLFRH----------ASYSSTTSDC 583 Query: 228 CTHGGLSS 205 T G LSS Sbjct: 584 ETDGYLSS 591
>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related mesenchymal modulator) (CReMM) (Chromatin remodeling factor CHROM1) (Peroxisomal proliferator-activated receptor A-inter Length = 2897 Score = 29.6 bits (65), Expect = 3.6 Identities = 19/79 (24%), Positives = 32/79 (40%) Frame = +3 Query: 150 SNDEHLHYLQREASTRRGGSKDRRECSTAQLSMRRTSPCCHGTATHSSSRILPHASMTSA 329 S +H E+S+ +R CS+ S +S C H + SSS +S +S+ Sbjct: 2118 SKKPRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSS 2177 Query: 330 GKGEPSPKVTALTGSLRAS 386 S ++ + S S Sbjct: 2178 SSSSTSSSSSSSSSSSEES 2196
>PQQE_SILPO (Q5LTB4) Coenzyme PQQ synthesis protein E (Pyrroloquinoline quinone| biosynthesis protein E) Length = 374 Score = 29.3 bits (64), Expect = 4.7 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Frame = +3 Query: 237 QLSMRRTSPCC---HGTATHSSSRILPHASMTSAGKGEPSPKVTALTGSLRASFHP 395 +L RR C HG AT + + +LP + T A K + L G+L F P Sbjct: 181 ELGARRLEVACVQFHGWATRNRAALLPSRAQTEAAKRIVAEAEARLRGTLAFDFVP 236
>ATL4D_ARATH (Q9M0R4) Putative RING-H2 finger protein ATL4D precursor| Length = 357 Score = 29.3 bits (64), Expect = 4.7 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Frame = +3 Query: 225 CSTAQLSMRRTSPCCHGTATHSSSRILPHASMT----SAGKG-EPSPKVTALTGS 374 C LS R T P C + S PH SM +A +G + SP +LTGS Sbjct: 147 CIDEWLSSRSTCPVCRANLSLKSGDSFPHPSMDVETGNAQRGVQESPDERSLTGS 201
>SSPO_BOVIN (P98167) SCO-spondin (Fragment)| Length = 867 Score = 28.9 bits (63), Expect = 6.2 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -3 Query: 405 PPTRGGRTPVTIQLRPSPSAMARPCP 328 PP GGRT T+ P + RPCP Sbjct: 57 PPQNGGRTCATLPGGPPSTRETRPCP 82
>U327_CAEEL (Q9N4K0) Hypothetical UPF0327 protein F54A3.5| Length = 105 Score = 28.9 bits (63), Expect = 6.2 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -2 Query: 445 ESRGRKIWFNSMVAAYTGWKDARND 371 +SR IWF S V TGW + R+D Sbjct: 48 KSRSWPIWFGSGVGLGTGWSNCRHD 72
>TRUB_SYNP7 (Q8KIY0) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 294 Score = 28.9 bits (63), Expect = 6.2 Identities = 16/32 (50%), Positives = 18/32 (56%) Frame = +2 Query: 338 RAIAEGDGLNWIVTGVLPPRVGGNHAVEPYLP 433 R I G L+ VTGVLP VG + PYLP Sbjct: 31 RRIGHGGTLDPAVTGVLPIAVGRATRLLPYLP 62
>TRUB_SYNP6 (Q5N5A0) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 294 Score = 28.9 bits (63), Expect = 6.2 Identities = 16/32 (50%), Positives = 18/32 (56%) Frame = +2 Query: 338 RAIAEGDGLNWIVTGVLPPRVGGNHAVEPYLP 433 R I G L+ VTGVLP VG + PYLP Sbjct: 31 RRIGHGGTLDPAVTGVLPIAVGRATRLLPYLP 62
>SDHD_VIBPA (Q87QA2) Probable D-serine dehydratase (EC 4.3.1.18) (D-serine| deaminase) (DSD) Length = 443 Score = 28.5 bits (62), Expect = 8.1 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = -3 Query: 306 ARSWKRNVSRSHGSKVTSFSSTTGQCCTHG 217 AR WK+N RSHG V + G G Sbjct: 194 AREWKKNKLRSHGVNVVEYEQDYGVAVEQG 223 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,259,777 Number of Sequences: 219361 Number of extensions: 1535656 Number of successful extensions: 5478 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 5158 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5471 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
