Clone Information

BLAST Search Result

Clone Name	rbast21a02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|Y18625.1\|TAE18625 Triticum aestivum mRNA for amylogenin	692	0.0
2	ref\|XM_474209.1\| Oryza sativa (japonica cultivar-group), predic...	163	6e-37
3	emb\|AL606608.3\|OSJN00056 Oryza sativa genomic DNA, chromosome 4,...	163	6e-37
4	gb\|AF480497.1\| Oryza sativa clone BAC 24K23, complete sequence	163	6e-37
5	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	163	6e-37
6	emb\|AJ011079.1\|OSP011079 Oryza sativa mRNA for RGP2 protein, par...	163	6e-37
7	dbj\|AK104316.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	163	6e-37
8	dbj\|AK071012.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	163	6e-37
9	dbj\|AK058644.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	163	6e-37
10	gb\|BT017433.1\| Zea mays clone EL01N0403E12.c mRNA sequence	161	2e-36
11	emb\|Y18623.1\|OSA18623 Oryza sativa mRNA for amylogenin	157	4e-35
12	gb\|AC124218.17\| Medicago truncatula clone mth2-30b20, complete s...	48	0.026
13	gb\|AC148994.3\| Medicago truncatula chromosome 7 BAC clone mth2-3...	48	0.026
14	gb\|AC142308.3\| Pan troglodytes BAC clone RP43-135J9 from Y, comp...	44	0.40
15	dbj\|BS000606.1\| Pan troglodytes chromosome Y clone:PTBY-009G03, ...	44	0.40
16	gb\|DP000054.1\| Pan troglodytes chromosome Y, partial sequence	44	0.40
17	gb\|AC009233.3\|AC009233 Homo sapiens BAC clone RP11-356K22 from Y...	44	0.40
18	gb\|AC149635.1\| Genomic sequence for broccoli [Brassica oleracea ...	42	1.6
19	gb\|AC091296.3\| Pan troglodytes clone RP43-109G19, complete sequence	42	1.6
20	emb\|AL670543.1\|NCB7K22 Neurospora crassa DNA linkage group II BA...	42	1.6
21	gb\|AC005231.3\| Homo sapiens PAC clone RP5-1186P10 from 7, comple...	42	1.6
22	gb\|AC015974.10\| Homo sapiens BAC clone RP11-467A18 from 2, compl...	42	1.6
23	gb\|AC012352.7\| Homo sapiens BAC clone RP11-12M21 from 2, complet...	42	1.6
24	tpd\|BR000100.1\| TPA: TPA_exp: Ciona intestinalis Ci-ZF(MATRIN)-3...	42	1.6
25	ref\|XM_420196.1\| PREDICTED: Gallus gallus similar to ACRC protei...	40	6.3
26	gb\|AC069503.25\| Homo sapiens 12 BAC RP11-87C12 (Roswell Park Can...	40	6.3
27	gb\|AC083890.4\| Mus musculus strain C57BL6/J chromosome 5 clone R...	40	6.3
28	emb\|AL451065.13\| Human DNA sequence from clone RP11-274J16 on ch...	40	6.3
29	emb\|AL360176.22\| Human DNA sequence from clone RP11-124H7 on chr...	40	6.3
30	emb\|AL359085.14\| Human DNA sequence from clone RP11-113J24 on ch...	40	6.3
31	emb\|AL359704.9\| Human DNA sequence from clone RP11-118H4 on chro...	40	6.3
32	emb\|AL158216.16\| Human DNA sequence from clone RP1-21K4 on chrom...	40	6.3
33	gb\|AF311103.5\| Homo sapiens chromosome 8 clone SCb-212E3 map p21...	40	6.3
34	emb\|AJ551423.1\|TTH551423 Thermus thermophilus cat gene for manga...	40	6.3
35	gb\|AC108163.3\| Homo sapiens BAC clone RP11-694K14 from 4, comple...	40	6.3
36	gb\|CP000254.1\| Methanospirillum hungatei JF-1, complete genome	40	6.3
37	gb\|AC010629.8\| Homo sapiens chromosome 5 clone CTD-2213L16, comp...	40	6.3
38	ref\|XM_340852.2\| PREDICTED: Rattus norvegicus kinase suppressor ...	40	6.3
39	gb\|AC016945.22\| Homo sapiens 3 BAC RP11-31L6 (Roswell Park Cance...	40	6.3
40	gb\|AC002479.1\|AC002479 Human BAC clone GS1-9G13 from 5p15.2, com...	40	6.3
41	gb\|AC154727.2\| Mus musculus BAC clone RP24-375I15 from 14, compl...	40	6.3
42	emb\|AL157955.5\|CNS01RGE Human chromosome 14 DNA sequence BAC R-3...	40	6.3
43	gb\|AC124825.8\| Mus musculus chromosome 5, clone RP24-248M2, comp...	40	6.3
44	gb\|AC172026.3\| Gallus gallus BAC clone CH261-126J23 from chromos...	40	6.3
45	emb\|AL928890.6\| Mouse DNA sequence from clone RP24-314D20 on chr...	40	6.3
46	dbj\|AB258404.1\| Streptococcus criceti dex gene for hypothetical ...	40	6.3
47	dbj\|AB008786.1\| Thermus sp. gene for pseudocatalase, complete cds	40	6.3

>emb|Y18625.1|TAE18625 Triticum aestivum mRNA for amylogenin
          Length = 1903

 Score =  692 bits (349), Expect = 0.0
 Identities = 435/461 (94%), Gaps = 2/461 (0%)
 Strand = Plus / Minus

                                                                        
Query: 7    aaatcatgcaagtctttttgatctggtatacacggttcttgagcatacacaaaccgaacg 66
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| 
Sbjct: 1812 aaatcatgcaagtctttttgatttggtatacacggttcttgagcatacacaaaccgaaca 1753

                                                                        
Query: 67   cctggttcactaaatg-tctacatcacaaattcccctcacacggaaatactgtttattca 125
            |||||   |||| ||| |||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 1752 cctgg-caactacatgttctacatcacaaattcccctcacacggaaacattgtttattca 1694

                                                                        
Query: 126  gctgcatcataacagtgcatatggaaattttaaagtccaagaagaagaaaaataagtatc 185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1693 gctgcatcataacagtgcatatggaaattttaaagtccaagaagaagaaaaataagtatc 1634

                                                                        
Query: 186  ttgatggataaaatggacacagtccagtattaggcgttctgagctccatgagattcccag 245
            |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 1633 ttgatggataaaatggacgcagtccagtattacgcgttctgagctccatgagatttccag 1574

                                                                        
Query: 246  agcttggtccattcctccatggcatcggcggctttggagaagattgcattcttcggcgcc 305
            ||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||||
Sbjct: 1573 agcttggtccattcctccatgacatcggcagctttggcgaagattgcattctttggcgcc 1514

                                                                        
Query: 306  agcttctgcctcacaatgccggctagctccttaatgcaatcatcgacagtaactgcggtc 365
            ||||||||| |||||||||| ||||||||||||| ||| |||||||||||||||||||||
Sbjct: 1513 agcttctgcttcacaatgccagctagctccttaacgcagtcatcgacagtaactgcggtc 1454

                                                                        
Query: 366  ctcgaaagcttgagcgactcgaagaagggaaggacgtcgtccatcactttcaccccttcc 425
            || || |||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct: 1453 cttgatagcttgagcgactcaaagaagggaaggacatcatccatcactttcaccccttcc 1394

                                                     
Query: 426  cactctttcaggctctccaaggccttgcctgcctctgcatc 466
            |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1393 cactctttgaggctctccaaggccttgcctgcctctgcatc 1353

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>ref|XM_474209.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1044

 Score =  163 bits (82), Expect = 6e-37
 Identities = 202/242 (83%)
 Strand = Plus / Minus

                                                                        
Query: 225  tgagctccatgagattcccagagcttggtccattcctccatggcatcggcggctttggag 284
            |||||||| ||||||| |||||| ||||||||||||||||| ||||| || ||||| | |
Sbjct: 1034 tgagctccgtgagatttccagagtttggtccattcctccattgcatcagcagctttagcg 975

                                                                        
Query: 285  aagattgcattcttcggcgccagcttctgcctcacaatgccggctagctccttaatgcaa 344
            ||||||||||||| |||  |||| |||| | | ||||||| || ||| |||||||  || 
Sbjct: 974  aagattgcattctgcggtcccagtttctccttgacaatgctggttagttccttaacacag 915

                                                                        
Query: 345  tcatcgacagtaactgcggtcctcgaaagcttgagcgactcgaagaagggaaggacgtcg 404
            || || ||||||||||  || ||||| ||||| || || |||||||||||||| ||| ||
Sbjct: 914  tcttcaacagtaactgaagtactcgatagcttcagagattcgaagaagggaagaacgacg 855

                                                                        
Query: 405  tccatcactttcaccccttcccactctttcaggctctccaaggccttgcctgcctctgca 464
            ||||| ||||||||||||||||| ||||||| |||||| |  ||||| ||||| ||||||
Sbjct: 854  tccatgactttcaccccttcccattctttcaagctctcgagagccttacctgcttctgca 795

              
Query: 465  tc 466
            ||
Sbjct: 794  tc 793

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>emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0015K02,
             complete sequence
          Length = 153623

 Score =  163 bits (82), Expect = 6e-37
 Identities = 202/242 (83%)
 Strand = Plus / Minus

                                                                         
Query: 225   tgagctccatgagattcccagagcttggtccattcctccatggcatcggcggctttggag 284
             |||||||| ||||||| |||||| ||||||||||||||||| ||||| || ||||| | |
Sbjct: 91246 tgagctccgtgagatttccagagtttggtccattcctccattgcatcagcagctttagcg 91187

                                                                         
Query: 285   aagattgcattcttcggcgccagcttctgcctcacaatgccggctagctccttaatgcaa 344
             ||||||||||||| |||  |||| |||| | | ||||||| || ||| |||||||  || 
Sbjct: 91186 aagattgcattctgcggtcccagtttctccttgacaatgctggttagttccttaacacag 91127

                                                                         
Query: 345   tcatcgacagtaactgcggtcctcgaaagcttgagcgactcgaagaagggaaggacgtcg 404
             || || ||||||||||  || ||||| ||||| || || |||||||||||||| ||| ||
Sbjct: 91126 tcttcaacagtaactgaagtactcgatagcttcagagattcgaagaagggaagaacgacg 91067

                                                                         
Query: 405   tccatcactttcaccccttcccactctttcaggctctccaaggccttgcctgcctctgca 464
             ||||| ||||||||||||||||| ||||||| |||||| |  ||||| ||||| ||||||
Sbjct: 91066 tccatgactttcaccccttcccattctttcaagctctcgagagccttacctgcttctgca 91007

               
Query: 465   tc 466
             ||
Sbjct: 91006 tc 91005

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>gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence
          Length = 181577

 Score =  163 bits (82), Expect = 6e-37
 Identities = 202/242 (83%)
 Strand = Plus / Minus

                                                                          
Query: 225    tgagctccatgagattcccagagcttggtccattcctccatggcatcggcggctttggag 284
              |||||||| ||||||| |||||| ||||||||||||||||| ||||| || ||||| | |
Sbjct: 171990 tgagctccgtgagatttccagagtttggtccattcctccattgcatcagcagctttagcg 171931

                                                                          
Query: 285    aagattgcattcttcggcgccagcttctgcctcacaatgccggctagctccttaatgcaa 344
              ||||||||||||| |||  |||| |||| | | ||||||| || ||| |||||||  || 
Sbjct: 171930 aagattgcattctgcggtcccagtttctccttgacaatgctggttagttccttaacacag 171871

                                                                          
Query: 345    tcatcgacagtaactgcggtcctcgaaagcttgagcgactcgaagaagggaaggacgtcg 404
              || || ||||||||||  || ||||| ||||| || || |||||||||||||| ||| ||
Sbjct: 171870 tcttcaacagtaactgaagtactcgatagcttcagagattcgaagaagggaagaacgacg 171811

                                                                          
Query: 405    tccatcactttcaccccttcccactctttcaggctctccaaggccttgcctgcctctgca 464
              ||||| ||||||||||||||||| ||||||| |||||| |  ||||| ||||| ||||||
Sbjct: 171810 tccatgactttcaccccttcccattctttcaagctctcgagagccttacctgcttctgca 171751

                
Query: 465    tc 466
              ||
Sbjct: 171750 tc 171749

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  163 bits (82), Expect = 6e-37
 Identities = 202/242 (83%)
 Strand = Plus / Minus

                                                                            
Query: 225      tgagctccatgagattcccagagcttggtccattcctccatggcatcggcggctttggag 284
                |||||||| ||||||| |||||| ||||||||||||||||| ||||| || ||||| | |
Sbjct: 33740803 tgagctccgtgagatttccagagtttggtccattcctccattgcatcagcagctttagcg 33740744

                                                                            
Query: 285      aagattgcattcttcggcgccagcttctgcctcacaatgccggctagctccttaatgcaa 344
                ||||||||||||| |||  |||| |||| | | ||||||| || ||| |||||||  || 
Sbjct: 33740743 aagattgcattctgcggtcccagtttctccttgacaatgctggttagttccttaacacag 33740684

                                                                            
Query: 345      tcatcgacagtaactgcggtcctcgaaagcttgagcgactcgaagaagggaaggacgtcg 404
                || || ||||||||||  || ||||| ||||| || || |||||||||||||| ||| ||
Sbjct: 33740683 tcttcaacagtaactgaagtactcgatagcttcagagattcgaagaagggaagaacgacg 33740624

                                                                            
Query: 405      tccatcactttcaccccttcccactctttcaggctctccaaggccttgcctgcctctgca 464
                ||||| ||||||||||||||||| ||||||| |||||| |  ||||| ||||| ||||||
Sbjct: 33740623 tccatgactttcaccccttcccattctttcaagctctcgagagccttacctgcttctgca 33740564

                  
Query: 465      tc 466
                ||
Sbjct: 33740563 tc 33740562

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>emb|AJ011079.1|OSP011079 Oryza sativa mRNA for RGP2 protein, partial
          Length = 1238

 Score =  163 bits (82), Expect = 6e-37
 Identities = 202/242 (83%)
 Strand = Plus / Minus

                                                                        
Query: 225  tgagctccatgagattcccagagcttggtccattcctccatggcatcggcggctttggag 284
            |||||||| ||||||| |||||| ||||||||||||||||| ||||| || ||||| | |
Sbjct: 1045 tgagctccgtgagatttccagagtttggtccattcctccattgcatcagcagctttagcg 986

                                                                        
Query: 285  aagattgcattcttcggcgccagcttctgcctcacaatgccggctagctccttaatgcaa 344
            ||||||||||||| |||  |||| |||| | | ||||||| || ||| |||||||  || 
Sbjct: 985  aagattgcattctgcggtcccagtttctccttgacaatgctggttagttccttaacacag 926

                                                                        
Query: 345  tcatcgacagtaactgcggtcctcgaaagcttgagcgactcgaagaagggaaggacgtcg 404
            || || ||||||||||  || ||||| ||||| || || |||||||||||||| ||| ||
Sbjct: 925  tcttcaacagtaactgaagtactcgatagcttcagagattcgaagaagggaagaacgacg 866

                                                                        
Query: 405  tccatcactttcaccccttcccactctttcaggctctccaaggccttgcctgcctctgca 464
            ||||| ||||||||||||||||| ||||||| |||||| |  ||||| ||||| ||||||
Sbjct: 865  tccatgactttcaccccttcccattctttcaagctctcgagagccttacctgcttctgca 806

              
Query: 465  tc 466
            ||
Sbjct: 805  tc 804

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>dbj|AK104316.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H07, full
            insert sequence
          Length = 1616

 Score =  163 bits (82), Expect = 6e-37
 Identities = 202/242 (83%)
 Strand = Plus / Minus

                                                                        
Query: 225  tgagctccatgagattcccagagcttggtccattcctccatggcatcggcggctttggag 284
            |||||||| ||||||| |||||| ||||||||||||||||| ||||| || ||||| | |
Sbjct: 1430 tgagctccgtgagatttccagagtttggtccattcctccattgcatcagcagctttagcg 1371

                                                                        
Query: 285  aagattgcattcttcggcgccagcttctgcctcacaatgccggctagctccttaatgcaa 344
            ||||||||||||| |||  |||| |||| | | ||||||| || ||| |||||||  || 
Sbjct: 1370 aagattgcattctgcggtcccagtttctccttgacaatgctggttagttccttaacacag 1311

                                                                        
Query: 345  tcatcgacagtaactgcggtcctcgaaagcttgagcgactcgaagaagggaaggacgtcg 404
            || || ||||||||||  || ||||| ||||| || || |||||||||||||| ||| ||
Sbjct: 1310 tcttcaacagtaactgaagtactcgatagcttcagagattcgaagaagggaagaacgacg 1251

                                                                        
Query: 405  tccatcactttcaccccttcccactctttcaggctctccaaggccttgcctgcctctgca 464
            ||||| ||||||||||||||||| ||||||| |||||| |  ||||| ||||| ||||||
Sbjct: 1250 tccatgactttcaccccttcccattctttcaagctctcgagagccttacctgcttctgca 1191

              
Query: 465  tc 466
            ||
Sbjct: 1190 tc 1189

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>dbj|AK071012.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079O10, full
            insert sequence
          Length = 1745

 Score =  163 bits (82), Expect = 6e-37
 Identities = 202/242 (83%)
 Strand = Plus / Minus

                                                                        
Query: 225  tgagctccatgagattcccagagcttggtccattcctccatggcatcggcggctttggag 284
            |||||||| ||||||| |||||| ||||||||||||||||| ||||| || ||||| | |
Sbjct: 1514 tgagctccgtgagatttccagagtttggtccattcctccattgcatcagcagctttagcg 1455

                                                                        
Query: 285  aagattgcattcttcggcgccagcttctgcctcacaatgccggctagctccttaatgcaa 344
            ||||||||||||| |||  |||| |||| | | ||||||| || ||| |||||||  || 
Sbjct: 1454 aagattgcattctgcggtcccagtttctccttgacaatgctggttagttccttaacacag 1395

                                                                        
Query: 345  tcatcgacagtaactgcggtcctcgaaagcttgagcgactcgaagaagggaaggacgtcg 404
            || || ||||||||||  || ||||| ||||| || || |||||||||||||| ||| ||
Sbjct: 1394 tcttcaacagtaactgaagtactcgatagcttcagagattcgaagaagggaagaacgacg 1335

                                                                        
Query: 405  tccatcactttcaccccttcccactctttcaggctctccaaggccttgcctgcctctgca 464
            ||||| ||||||||||||||||| ||||||| |||||| |  ||||| ||||| ||||||
Sbjct: 1334 tccatgactttcaccccttcccattctttcaagctctcgagagccttacctgcttctgca 1275

              
Query: 465  tc 466
            ||
Sbjct: 1274 tc 1273

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>dbj|AK058644.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-E07, full
            insert sequence
          Length = 1422

 Score =  163 bits (82), Expect = 6e-37
 Identities = 202/242 (83%)
 Strand = Plus / Minus

                                                                        
Query: 225  tgagctccatgagattcccagagcttggtccattcctccatggcatcggcggctttggag 284
            |||||||| ||||||| |||||| ||||||||||||||||| ||||| || ||||| | |
Sbjct: 1236 tgagctccgtgagatttccagagtttggtccattcctccattgcatcagcagctttagcg 1177

                                                                        
Query: 285  aagattgcattcttcggcgccagcttctgcctcacaatgccggctagctccttaatgcaa 344
            ||||||||||||| |||  |||| |||| | | ||||||| || ||| |||||||  || 
Sbjct: 1176 aagattgcattctgcggtcccagtttctccttgacaatgctggttagttccttaacacag 1117

                                                                        
Query: 345  tcatcgacagtaactgcggtcctcgaaagcttgagcgactcgaagaagggaaggacgtcg 404
            || || ||||||||||  || ||||| ||||| || || |||||||||||||| ||| ||
Sbjct: 1116 tcttcaacagtaactgaagtactcgatagcttcagagattcgaagaagggaagaacgacg 1057

                                                                        
Query: 405  tccatcactttcaccccttcccactctttcaggctctccaaggccttgcctgcctctgca 464
            ||||| ||||||||||||||||| ||||||| |||||| |  ||||| ||||| ||||||
Sbjct: 1056 tccatgactttcaccccttcccattctttcaagctctcgagagccttacctgcttctgca 997

              
Query: 465  tc 466
            ||
Sbjct: 996  tc 995

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>gb|BT017433.1| Zea mays clone EL01N0403E12.c mRNA sequence
          Length = 1110

 Score =  161 bits (81), Expect = 2e-36
 Identities = 189/225 (84%)
 Strand = Plus / Minus

                                                                       
Query: 242 ccagagcttggtccattcctccatggcatcggcggctttggagaagattgcattcttcgg 301
           |||||| ||| |||||||| ||||||||||||| ||||||| ||||||||||||||| ||
Sbjct: 831 ccagagattgttccattccaccatggcatcggctgctttggtgaagattgcattcttagg 772

                                                                       
Query: 302 cgccagcttctgcctcacaatgccggctagctccttaatgcaatcatcgacagtaactgc 361
             | || ||||  |  ||||| || || ||||||||||  ||||| || |||||||||||
Sbjct: 771 tcctagtttctcacggacaattccagcaagctccttaacacaatcgtcaacagtaactgc 712

                                                                       
Query: 362 ggtcctcgaaagcttgagcgactcgaagaagggaaggacgtcgtccatcactttcacccc 421
            |||||||| ||||||||||||| |||||| || || || |||||||| ||||| |||||
Sbjct: 711 agtcctcgatagcttgagcgactggaagaatgggagaacatcgtccatgacttttacccc 652

                                                        
Query: 422 ttcccactctttcaggctctccaaggccttgcctgcctctgcatc 466
           |||||||||||||| ||||||||  || || ||||| ||||||||
Sbjct: 651 ttcccactctttcaagctctccagagctttacctgcttctgcatc 607

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>emb|Y18623.1|OSA18623 Oryza sativa mRNA for amylogenin
          Length = 1157

 Score =  157 bits (79), Expect = 4e-35
 Identities = 199/239 (83%)
 Strand = Plus / Minus

                                                                        
Query: 228  gctccatgagattcccagagcttggtccattcctccatggcatcggcggctttggagaag 287
            ||||| ||||||| |||||| ||||||||||||||||| ||||| || ||||| | ||||
Sbjct: 1045 gctccgtgagatttccagagtttggtccattcctccattgcatcagcagctttagcgaag 986

                                                                        
Query: 288  attgcattcttcggcgccagcttctgcctcacaatgccggctagctccttaatgcaatca 347
            |||||||||| |||  |||| |||| | | ||||||| || ||| |||||||  || || 
Sbjct: 985  attgcattctgcggtcccagtttctccttgacaatgctggttagttccttaacacagtct 926

                                                                        
Query: 348  tcgacagtaactgcggtcctcgaaagcttgagcgactcgaagaagggaaggacgtcgtcc 407
            || ||||||||||  || ||||| ||||| || || |||||||||||||| ||| |||||
Sbjct: 925  tcaacagtaactgaagtactcgatagcttcagagattcgaagaagggaagaacgacgtcc 866

                                                                       
Query: 408  atcactttcaccccttcccactctttcaggctctccaaggccttgcctgcctctgcatc 466
            || ||||||||||||||||| ||||||| |||||| |  ||||| ||||| ||||||||
Sbjct: 865  atgactttcaccccttcccattctttcaagctctcgagagccttacctgcttctgcatc 807

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>gb|AC124218.17| Medicago truncatula clone mth2-30b20, complete sequence
          Length = 120761

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 399   acgtcgtccatcactttcaccccttcccactctttc 434
             ||||| ||||||| ||||||||||||||| ||||||
Sbjct: 15753 acgtcctccatcaatttcaccccttcccattctttc 15788

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>gb|AC148994.3| Medicago truncatula chromosome 7 BAC clone mth2-3c7, complete
            sequence
          Length = 109093

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 399  acgtcgtccatcactttcaccccttcccactctttc 434
            ||||| ||||||| ||||||||||||||| ||||||
Sbjct: 9872 acgtcctccatcaatttcaccccttcccattctttc 9837

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>gb|AC142308.3| Pan troglodytes BAC clone RP43-135J9 from Y, complete sequence
          Length = 148521

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 74    cactaaatgtctacatcacaaa 95
             ||||||||||||||||||||||
Sbjct: 32093 cactaaatgtctacatcacaaa 32072

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>dbj|BS000606.1| Pan troglodytes chromosome Y clone:PTBY-009G03, complete sequences
          Length = 113454

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 74    cactaaatgtctacatcacaaa 95
             ||||||||||||||||||||||
Sbjct: 27339 cactaaatgtctacatcacaaa 27360

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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 74       cactaaatgtctacatcacaaa 95
                ||||||||||||||||||||||
Sbjct: 15583532 cactaaatgtctacatcacaaa 15583511

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>gb|AC009233.3|AC009233 Homo sapiens BAC clone RP11-356K22 from Y, complete sequence
          Length = 195439

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 74    cactaaatgtctacatcacaaa 95
             ||||||||||||||||||||||
Sbjct: 16684 cactaaatgtctacatcacaaa 16705

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>gb|AC149635.1| Genomic sequence for broccoli [Brassica oleracea L. (Italica group)]
             BAC clone B19N3, complete sequence
          Length = 96718

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 157   aaagtccaagaagaagaaaaa 177
             |||||||||||||||||||||
Sbjct: 18973 aaagtccaagaagaagaaaaa 18953

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>gb|AC091296.3| Pan troglodytes clone RP43-109G19, complete sequence
          Length = 185979

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 190    tggataaaatggacacagtcc 210
              |||||||||||||||||||||
Sbjct: 157387 tggataaaatggacacagtcc 157367

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>emb|AL670543.1|NCB7K22 Neurospora crassa DNA linkage group II BAC clone B7K22
          Length = 88306

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 157   aaagtccaagaagaagaaaaa 177
             |||||||||||||||||||||
Sbjct: 36276 aaagtccaagaagaagaaaaa 36256

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>gb|AC005231.3| Homo sapiens PAC clone RP5-1186P10 from 7, complete sequence
          Length = 102112

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 190   tggataaaatggacacagtcc 210
             |||||||||||||||||||||
Sbjct: 71223 tggataaaatggacacagtcc 71243

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>gb|AC015974.10| Homo sapiens BAC clone RP11-467A18 from 2, complete sequence
          Length = 196544

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 167  aagaagaaaaataagtatctt 187
            |||||||||||||||||||||
Sbjct: 8813 aagaagaaaaataagtatctt 8793



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 167  aagaagaaaaataagtatctt 187
            |||||||||||||||||||||
Sbjct: 7037 aagaagaaaaataagtatctt 7057

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>gb|AC012352.7| Homo sapiens BAC clone RP11-12M21 from 2, complete sequence
          Length = 168142

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 433   tcaggctctccaaggccttgc 453
             |||||||||||||||||||||
Sbjct: 21996 tcaggctctccaaggccttgc 21976

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>tpd|BR000100.1| TPA: TPA_exp: Ciona intestinalis Ci-ZF(MATRIN)-3 mRNA for zinc
           finger protein, partial cds
          Length = 2501

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 158 aagtccaagaagaagaaaaataagt 182
           |||||||||||||||||||| ||||
Sbjct: 894 aagtccaagaagaagaaaaagaagt 918

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>ref|XM_420196.1| PREDICTED: Gallus gallus similar to ACRC protein; putative nuclear
           protein (LOC422202), mRNA
          Length = 1578

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 152 attttaaagtccaagaagaa 171
           ||||||||||||||||||||
Sbjct: 209 attttaaagtccaagaagaa 190

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>gb|AC069503.25| Homo sapiens 12 BAC RP11-87C12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 186580

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 437   gctctccaaggccttgcctgcctc 460
             ||||||||||||||| ||||||||
Sbjct: 94968 gctctccaaggccttccctgcctc 94991

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>gb|AC083890.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-284P20, complete
             sequence
          Length = 203967

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   cgccagcttctgcctcacaa 321
             ||||||||||||||||||||
Sbjct: 10668 cgccagcttctgcctcacaa 10687

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>emb|AL451065.13| Human DNA sequence from clone RP11-274J16 on chromosome 9 Contains the
             3' end of the FGD3 gene for FGD1 family, member 3
             (FLJ00004), a novel gene, a novel gene (MGC26847), a novel
             gene (MGC11115), the NINJ1 gene for ninjurin 1 and three
             CpG islands, complete sequence
          Length = 163689

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   taaaatggacacagtccagt 213
             ||||||||||||||||||||
Sbjct: 80252 taaaatggacacagtccagt 80233

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>emb|AL360176.22| Human DNA sequence from clone RP11-124H7 on chromosome 10 Contains the
             5' end of the MMP21 gene for matrix metalloproteinase 21,
             the UROS gene for uroporphyrinogen III synthase
             (congenital erythropoietic porphyria), the BCCIP gene for
             BRCA2 and CDKN1A interacting protein (TOK-1), the DDX32
             gene for DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32
             (FLJ10694, FLJ10889), the 5' UTR of a novel gene
             (LOC92565) and three CpG islands, complete sequence
          Length = 155699

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    ggttcactaaatgtctacat 89
             ||||||||||||||||||||
Sbjct: 21871 ggttcactaaatgtctacat 21852

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>emb|AL359085.14| Human DNA sequence from clone RP11-113J24 on chromosome 13 Contains the
             5' end of a novel gene, a novel gene (FLJ14624 FLJ31847),
             the 5' end of a novel gene (FLJ22153), COX5B (cytochrome c
             oxidase subunit Vb) pseudogene and two CpG islands,
             complete sequence
          Length = 152794

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 446   ggccttgcctgcctctgcat 465
             ||||||||||||||||||||
Sbjct: 80886 ggccttgcctgcctctgcat 80905

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>emb|AL359704.9| Human DNA sequence from clone RP11-118H4 on chromosome 1 Contains the
             5' end of the ADPRT gene for ADP-ribosyltransferase (NAD+;
             poly (ADP-ribose) polymerase), a ribosomal protein S3A
             (RPS3A) pseudogene, a novel pseudogene, the 5' end of a
             novel gene (DKFZp761P211) and a CpG island, complete
             sequence
          Length = 171501

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   cccagagcttggtccattcc 260
             ||||||||||||||||||||
Sbjct: 63673 cccagagcttggtccattcc 63692

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>emb|AL158216.16| Human DNA sequence from clone RP1-21K4 on chromosome 1p33-34.3
            Contains the 5' end of a variant of the HIVEP3 gene for
            human immunodeficiency virus type I enhancer binding
            protein 3, a heterogeneous nuclear ribonucleoprotein F
            (HNRPF) pseudogene and a CpG island, complete sequence
          Length = 51692

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 187  tgatggataaaatggacacagtcc 210
            ||||| ||||||||||||||||||
Sbjct: 9796 tgatgaataaaatggacacagtcc 9819

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>gb|AF311103.5| Homo sapiens chromosome 8 clone SCb-212E3 map p21-p11, complete
             sequence
          Length = 234429

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 415   tcaccccttcccactctttc 434
             ||||||||||||||||||||
Sbjct: 31340 tcaccccttcccactctttc 31359

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>emb|AJ551423.1|TTH551423 Thermus thermophilus cat gene for manganese catalase
          Length = 909

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 435 aggctctccaaggccttgcc 454
           ||||||||||||||||||||
Sbjct: 596 aggctctccaaggccttgcc 577

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>gb|AC108163.3| Homo sapiens BAC clone RP11-694K14 from 4, complete sequence
          Length = 95304

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 164   aagaagaagaaaaataagtatctt 187
             |||||||||||| |||||||||||
Sbjct: 82604 aagaagaagaaagataagtatctt 82581

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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 158     aagtccaagaagaagaaaaa 177
               ||||||||||||||||||||
Sbjct: 3375533 aagtccaagaagaagaaaaa 3375552

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>gb|AC010629.8| Homo sapiens chromosome 5 clone CTD-2213L16, complete sequence
          Length = 82882

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 415   tcaccccttcccactctttc 434
             ||||||||||||||||||||
Sbjct: 50486 tcaccccttcccactctttc 50467

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>ref|XM_340852.2| PREDICTED: Rattus norvegicus kinase suppressor of ras (predicted)
            (Ksr_predicted), mRNA
          Length = 6282

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 268  catcggcggctttggagaag 287
            ||||||||||||||||||||
Sbjct: 5533 catcggcggctttggagaag 5514

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>gb|AC016945.22| Homo sapiens 3 BAC RP11-31L6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 96001

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   tgcatatggaaattttaaag 160
             ||||||||||||||||||||
Sbjct: 82701 tgcatatggaaattttaaag 82682

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>gb|AC002479.1|AC002479 Human BAC clone GS1-9G13 from 5p15.2, complete sequence
          Length = 88682

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 415   tcaccccttcccactctttc 434
             ||||||||||||||||||||
Sbjct: 14895 tcaccccttcccactctttc 14876

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>gb|AC154727.2| Mus musculus BAC clone RP24-375I15 from 14, complete sequence
          Length = 189907

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 175    aaataagtatcttgatggataaaa 198
              ||||||||||||||||| ||||||
Sbjct: 138603 aaataagtatcttgatgaataaaa 138580

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>emb|AL157955.5|CNS01RGE Human chromosome 14 DNA sequence BAC R-300J18 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 177169

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   tccaagaagaagaaaaataa 180
             ||||||||||||||||||||
Sbjct: 31397 tccaagaagaagaaaaataa 31416

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>gb|AC124825.8| Mus musculus chromosome 5, clone RP24-248M2, complete sequence
          Length = 188127

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   aagaagaagaaaaataagta 183
             ||||||||||||||||||||
Sbjct: 73102 aagaagaagaaaaataagta 73083

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>gb|AC172026.3| Gallus gallus BAC clone CH261-126J23 from chromosome ul, complete
              sequence
          Length = 179661

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    attttaaagtccaagaagaa 171
              ||||||||||||||||||||
Sbjct: 102302 attttaaagtccaagaagaa 102321

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>emb|AL928890.6| Mouse DNA sequence from clone RP24-314D20 on chromosome 2, complete
              sequence
          Length = 132135

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 411    actttcaccccttcccactc 430
              ||||||||||||||||||||
Sbjct: 101628 actttcaccccttcccactc 101609

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>dbj|AB258404.1| Streptococcus criceti dex gene for hypothetical protein, complete cds
          Length = 3960

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 443  caaggccttgcctgcctctgcatc 466
            |||||||||||| |||||||||||
Sbjct: 1959 caaggccttgccagcctctgcatc 1936

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>dbj|AB008786.1| Thermus sp. gene for pseudocatalase, complete cds
          Length = 1393

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 435 aggctctccaaggccttgcc 454
           ||||||||||||||||||||
Sbjct: 982 aggctctccaaggccttgcc 963


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,825,193
Number of Sequences: 3902068
Number of extensions: 5825193
Number of successful extensions: 134534
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134358
Number of HSP's gapped (non-prelim): 176
length of query: 466
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 444
effective length of database: 17,147,199,772
effective search space: 7613356698768
effective search space used: 7613356698768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result