ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast19g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF366565.1| Triticum aestivum aquaporin PIP2 (Pip2) mRNA, com... 80 3e-12
2ref|XM_420676.1| PREDICTED: Gallus gallus similar to CDNA sequen... 42 0.56
3emb|BX935566.2| Gallus gallus finished cDNA, clone ChEST85p4 42 0.56
4emb|CR388054.11| Zebrafish DNA sequence from clone CH211-82E18 i... 40 2.2
5emb|AL356096.11| Human DNA sequence from clone RP11-366K1 on chr... 40 2.2
6gb|AC084357.23| Homo sapiens 12q BAC RP11-415I12 (Roswell Park C... 40 2.2
7dbj|AB023034.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 2.2
8gb|AC139025.9| Mus musculus chromosome 8, clone RP23-426K13, com... 38 8.7
9gb|AC109140.6| Mus musculus chromosome 5, clone RP23-153N23, com... 38 8.7
10gb|AC138175.10| Mus musculus chromosome 5, clone RP23-4L6, compl... 38 8.7
11gb|AC182587.5| Pan troglodytes BAC clone CH251-207G3 from chromo... 38 8.7
12ref|NM_031374.1| Mus musculus testis expressed gene 15 (Tex15), ... 38 8.7
13emb|BX936358.10| Zebrafish DNA sequence from clone CH211-159A10 ... 38 8.7
14emb|AL731849.5| Mouse DNA sequence from clone RP23-208A2 on chro... 38 8.7
15emb|AL845328.7| Zebrafish DNA sequence from clone DKEY-16K6 in l... 38 8.7
16emb|BX663525.6| Zebrafish DNA sequence from clone DKEY-97A13 in ... 38 8.7
17ref|NM_137243.2| Drosophila melanogaster Cysteinyl-tRNA syntheta... 38 8.7
18dbj|AK132667.1| Mus musculus adult male testis cDNA, RIKEN full-... 38 8.7
19gb|AC104612.1| Drosophila melanogaster, chromosome 2R, region 52... 38 8.7
20dbj|AK039768.1| Mus musculus adult male spinal cord cDNA, RIKEN ... 38 8.7
21gb|AF285589.1|AF285589 Mus musculus testis protein TEX15 (Tex15)... 38 8.7
22gb|AC007038.6| Homo sapiens BAC clone RP11-260M2 from 2, complet... 38 8.7
23gb|AC007572.5|AC007572 Drosophila melanogaster, chromosome 2R, r... 38 8.7
24gb|AC068600.5| Homo sapiens BAC clone RP11-567N20 from 2, comple... 38 8.7
25gb|AC154378.2| Mus musculus BAC clone RP23-64O5 from 17, complet... 38 8.7
26emb|BX005161.6| Zebrafish DNA sequence from clone CH211-168N16 i... 38 8.7
27gb|AF132160.1|AF132160 Drosophila melanogaster clone LD21177 unk... 38 8.7
28gb|AE003808.4| Drosophila melanogaster chromosome 2R, section 42... 38 8.7
29emb|CT033750.18| Mouse DNA sequence from clone RP23-263M5 on chr... 38 8.7
30emb|CR792434.8| Zebrafish DNA sequence from clone CH211-219O9 in... 38 8.7
31gb|AC004320.1|AC004320 Drosophila melanogaster (P1 DS07424 (D214... 38 8.7
32dbj|AP004896.1| Lotus japonicus genomic DNA, chromosome 5, clone... 38 8.7
33emb|AL773567.16| Mouse DNA sequence from clone RP23-204P1 on chr... 38 8.7

>gb|AF366565.1| Triticum aestivum aquaporin PIP2 (Pip2) mRNA, complete cds
          Length = 1071

 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 64/72 (88%)
 Strand = Plus / Minus

                                                                        
Query: 52   aactagcgaacaatgtaaagccaacactaacatacaatacaactcatacgttcagtaacg 111
            ||||||| |||| |||||| |||||||||||||||||| |||  ||||||||||||||| 
Sbjct: 1049 aactagcaaacactgtaaacccaacactaacatacaatgcaatacatacgttcagtaaca 990

                        
Query: 112  aaacaacatact 123
             |||||||||||
Sbjct: 989  caacaacatact 978



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>ref|XM_420676.1| PREDICTED: Gallus gallus similar to CDNA sequence BC035537
            (LOC422721), mRNA
          Length = 1972

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 86   caatacaactcatacgttcag 106
            |||||||||||||||||||||
Sbjct: 1656 caatacaactcatacgttcag 1676



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>emb|BX935566.2| Gallus gallus finished cDNA, clone ChEST85p4
          Length = 1345

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 86   caatacaactcatacgttcag 106
            |||||||||||||||||||||
Sbjct: 1029 caatacaactcatacgttcag 1049



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>emb|CR388054.11| Zebrafish DNA sequence from clone CH211-82E18 in linkage group 1,
            complete sequence
          Length = 162569

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 80   aacatacaatacaactcata 99
            ||||||||||||||||||||
Sbjct: 6272 aacatacaatacaactcata 6291



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>emb|AL356096.11| Human DNA sequence from clone RP11-366K1 on chromosome 13 Contains a
             novel gene and a CpG island, complete sequence
          Length = 190101

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 27    agaaattcatctcttgcattaact 50
             |||||||| |||||||||||||||
Sbjct: 62921 agaaattcttctcttgcattaact 62898



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>gb|AC084357.23| Homo sapiens 12q BAC RP11-415I12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 188527

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    caatagaaattcatctcttg 42
             ||||||||||||||||||||
Sbjct: 64828 caatagaaattcatctcttg 64809



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>dbj|AB023034.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K7J8
          Length = 56963

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 13    tggtttctctcaatagaaattcat 36
             ||||||||||| ||||||||||||
Sbjct: 21944 tggtttctctcgatagaaattcat 21967



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>gb|AC139025.9| Mus musculus chromosome 8, clone RP23-426K13, complete sequence
          Length = 203230

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 65    tgtaaagccaacactaacataca 87
             ||||||||||||||| |||||||
Sbjct: 48584 tgtaaagccaacactgacataca 48562



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>gb|AC109140.6| Mus musculus chromosome 5, clone RP23-153N23, complete sequence
          Length = 228663

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 85     acaatacaactcatacgtt 103
              |||||||||||||||||||
Sbjct: 174749 acaatacaactcatacgtt 174767



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>gb|AC138175.10| Mus musculus chromosome 5, clone RP23-4L6, complete sequence
          Length = 211333

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 85     acaatacaactcatacgtt 103
              |||||||||||||||||||
Sbjct: 132540 acaatacaactcatacgtt 132522



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>gb|AC182587.5| Pan troglodytes BAC clone CH251-207G3 from chromosome 18, complete
              sequence
          Length = 195115

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 68     aaagccaacactaacatacaata 90
              |||||||| ||||||||||||||
Sbjct: 189144 aaagccaagactaacatacaata 189122



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>ref|NM_031374.1| Mus musculus testis expressed gene 15 (Tex15), mRNA
          Length = 8422

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 65   tgtaaagccaacactaacataca 87
            ||||||||||||||| |||||||
Sbjct: 4045 tgtaaagccaacactgacataca 4067



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>emb|BX936358.10| Zebrafish DNA sequence from clone CH211-159A10 in linkage group 3,
             complete sequence
          Length = 165674

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 72    ccaacactaacatacaata 90
             |||||||||||||||||||
Sbjct: 27351 ccaacactaacatacaata 27333



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>emb|AL731849.5| Mouse DNA sequence from clone RP23-208A2 on chromosome 11 Contains part
             of the Car10 gene for carbonic anhydrase 10, complete
             sequence
          Length = 114636

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 65    tgtaaagccaacactaaca 83
             |||||||||||||||||||
Sbjct: 98614 tgtaaagccaacactaaca 98632



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>emb|AL845328.7| Zebrafish DNA sequence from clone DKEY-16K6 in linkage group 8 Contains
             the 3' part of a novel gene similar to human and mouse
             CAPZA (capping protein (actin filament) muscle Z-line,
             alpha), a novel gene and two CpG islands, complete
             sequence
          Length = 196248

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 131   aacaatggattttagcagc 149
             |||||||||||||||||||
Sbjct: 61333 aacaatggattttagcagc 61351



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>emb|BX663525.6| Zebrafish DNA sequence from clone DKEY-97A13 in linkage group 2, complete
              sequence
          Length = 261927

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 62     caatgtaaagccaacactaacat 84
              ||||| |||||||||||||||||
Sbjct: 177441 caatggaaagccaacactaacat 177419



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>ref|NM_137243.2| Drosophila melanogaster Cysteinyl-tRNA synthetase CG8431-RA
            (Aats-cys), mRNA
          Length = 2454

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 35   atctcttgcattaactaaa 53
            |||||||||||||||||||
Sbjct: 2401 atctcttgcattaactaaa 2383



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>dbj|AK132667.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4921517C14 product:testis expressed gene
           15, full insert sequence
          Length = 2112

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 65  tgtaaagccaacactaacataca 87
           ||||||||||||||| |||||||
Sbjct: 791 tgtaaagccaacactgacataca 813



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>gb|AC104612.1| Drosophila melanogaster, chromosome 2R, region 52F-53A, BAC clone
              BACR29I14, complete sequence
          Length = 169877

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 35     atctcttgcattaactaaa 53
              |||||||||||||||||||
Sbjct: 118153 atctcttgcattaactaaa 118171



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>dbj|AK039768.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched
            library, clone:A330105L03 product:unclassifiable, full
            insert sequence
          Length = 3742

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 65   tgtaaagccaacactaaca 83
            |||||||||||||||||||
Sbjct: 2668 tgtaaagccaacactaaca 2686



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>gb|AF285589.1|AF285589 Mus musculus testis protein TEX15 (Tex15) mRNA, complete cds
          Length = 8422

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 65   tgtaaagccaacactaacataca 87
            ||||||||||||||| |||||||
Sbjct: 4045 tgtaaagccaacactgacataca 4067



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>gb|AC007038.6| Homo sapiens BAC clone RP11-260M2 from 2, complete sequence
          Length = 99031

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 68    aaagccaacactaacatac 86
             |||||||||||||||||||
Sbjct: 24300 aaagccaacactaacatac 24318



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>gb|AC007572.5|AC007572 Drosophila melanogaster, chromosome 2R, region 53A-53B, BAC clone
           BACR21B04, complete sequence
          Length = 156823

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 35  atctcttgcattaactaaa 53
           |||||||||||||||||||
Sbjct: 615 atctcttgcattaactaaa 597



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>gb|AC068600.5| Homo sapiens BAC clone RP11-567N20 from 2, complete sequence
          Length = 136657

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 4     gtaataacttggtttctct 22
             |||||||||||||||||||
Sbjct: 32845 gtaataacttggtttctct 32827



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>gb|AC154378.2| Mus musculus BAC clone RP23-64O5 from 17, complete sequence
          Length = 232701

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 7      ataacttggtttctctcaa 25
              |||||||||||||||||||
Sbjct: 175074 ataacttggtttctctcaa 175056



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>emb|BX005161.6| Zebrafish DNA sequence from clone CH211-168N16 in linkage group 20,
             complete sequence
          Length = 150884

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 136   tggattttagcagccacac 154
             |||||||||||||||||||
Sbjct: 95632 tggattttagcagccacac 95614



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>gb|AF132160.1|AF132160 Drosophila melanogaster clone LD21177 unknown mRNA
          Length = 2448

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 35   atctcttgcattaactaaa 53
            |||||||||||||||||||
Sbjct: 2376 atctcttgcattaactaaa 2358



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>gb|AE003808.4| Drosophila melanogaster chromosome 2R, section 42 of 73 of the complete
              sequence
          Length = 260367

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 35     atctcttgcattaactaaa 53
              |||||||||||||||||||
Sbjct: 203119 atctcttgcattaactaaa 203101



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>emb|CT033750.18| Mouse DNA sequence from clone RP23-263M5 on chromosome 17, complete
             sequence
          Length = 268616

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 7     ataacttggtttctctcaa 25
             |||||||||||||||||||
Sbjct: 20757 ataacttggtttctctcaa 20739



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>emb|CR792434.8| Zebrafish DNA sequence from clone CH211-219O9 in linkage group 3,
             complete sequence
          Length = 69225

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 72    ccaacactaacatacaata 90
             |||||||||||||||||||
Sbjct: 61565 ccaacactaacatacaata 61583



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>gb|AC004320.1|AC004320 Drosophila melanogaster (P1 DS07424 (D214)) DNA sequence, complete
             sequence
          Length = 63433

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 35    atctcttgcattaactaaa 53
             |||||||||||||||||||
Sbjct: 47821 atctcttgcattaactaaa 47839



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>dbj|AP004896.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT16I07, TM0040,
             complete sequence
          Length = 92281

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 32    ttcatctcttgcattaact 50
             |||||||||||||||||||
Sbjct: 10254 ttcatctcttgcattaact 10236



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>emb|AL773567.16| Mouse DNA sequence from clone RP23-204P1 on chromosome 4, complete
             sequence
          Length = 189970

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 113   aacaacatactcgtactta 131
             |||||||||||||||||||
Sbjct: 54177 aacaacatactcgtactta 54159


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,370,186
Number of Sequences: 3902068
Number of extensions: 1370186
Number of successful extensions: 93298
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93236
Number of HSP's gapped (non-prelim): 62
length of query: 177
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 155
effective length of database: 17,147,199,772
effective search space: 2657815964660
effective search space used: 2657815964660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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