| Clone Name | rbast19g08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF366565.1| Triticum aestivum aquaporin PIP2 (Pip2) mRNA, complete cds Length = 1071 Score = 79.8 bits (40), Expect = 3e-12 Identities = 64/72 (88%) Strand = Plus / Minus Query: 52 aactagcgaacaatgtaaagccaacactaacatacaatacaactcatacgttcagtaacg 111 ||||||| |||| |||||| |||||||||||||||||| ||| ||||||||||||||| Sbjct: 1049 aactagcaaacactgtaaacccaacactaacatacaatgcaatacatacgttcagtaaca 990 Query: 112 aaacaacatact 123 ||||||||||| Sbjct: 989 caacaacatact 978
>ref|XM_420676.1| PREDICTED: Gallus gallus similar to CDNA sequence BC035537 (LOC422721), mRNA Length = 1972 Score = 42.1 bits (21), Expect = 0.56 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 caatacaactcatacgttcag 106 ||||||||||||||||||||| Sbjct: 1656 caatacaactcatacgttcag 1676
>emb|BX935566.2| Gallus gallus finished cDNA, clone ChEST85p4 Length = 1345 Score = 42.1 bits (21), Expect = 0.56 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 caatacaactcatacgttcag 106 ||||||||||||||||||||| Sbjct: 1029 caatacaactcatacgttcag 1049
>emb|CR388054.11| Zebrafish DNA sequence from clone CH211-82E18 in linkage group 1, complete sequence Length = 162569 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 aacatacaatacaactcata 99 |||||||||||||||||||| Sbjct: 6272 aacatacaatacaactcata 6291
>emb|AL356096.11| Human DNA sequence from clone RP11-366K1 on chromosome 13 Contains a novel gene and a CpG island, complete sequence Length = 190101 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 agaaattcatctcttgcattaact 50 |||||||| ||||||||||||||| Sbjct: 62921 agaaattcttctcttgcattaact 62898
>gb|AC084357.23| Homo sapiens 12q BAC RP11-415I12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 188527 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 caatagaaattcatctcttg 42 |||||||||||||||||||| Sbjct: 64828 caatagaaattcatctcttg 64809
>dbj|AB023034.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K7J8 Length = 56963 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 tggtttctctcaatagaaattcat 36 ||||||||||| |||||||||||| Sbjct: 21944 tggtttctctcgatagaaattcat 21967
>gb|AC139025.9| Mus musculus chromosome 8, clone RP23-426K13, complete sequence Length = 203230 Score = 38.2 bits (19), Expect = 8.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 65 tgtaaagccaacactaacataca 87 ||||||||||||||| ||||||| Sbjct: 48584 tgtaaagccaacactgacataca 48562
>gb|AC109140.6| Mus musculus chromosome 5, clone RP23-153N23, complete sequence Length = 228663 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 85 acaatacaactcatacgtt 103 ||||||||||||||||||| Sbjct: 174749 acaatacaactcatacgtt 174767
>gb|AC138175.10| Mus musculus chromosome 5, clone RP23-4L6, complete sequence Length = 211333 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 acaatacaactcatacgtt 103 ||||||||||||||||||| Sbjct: 132540 acaatacaactcatacgtt 132522
>gb|AC182587.5| Pan troglodytes BAC clone CH251-207G3 from chromosome 18, complete sequence Length = 195115 Score = 38.2 bits (19), Expect = 8.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 68 aaagccaacactaacatacaata 90 |||||||| |||||||||||||| Sbjct: 189144 aaagccaagactaacatacaata 189122
>ref|NM_031374.1| Mus musculus testis expressed gene 15 (Tex15), mRNA Length = 8422 Score = 38.2 bits (19), Expect = 8.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 65 tgtaaagccaacactaacataca 87 ||||||||||||||| ||||||| Sbjct: 4045 tgtaaagccaacactgacataca 4067
>emb|BX936358.10| Zebrafish DNA sequence from clone CH211-159A10 in linkage group 3, complete sequence Length = 165674 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 72 ccaacactaacatacaata 90 ||||||||||||||||||| Sbjct: 27351 ccaacactaacatacaata 27333
>emb|AL731849.5| Mouse DNA sequence from clone RP23-208A2 on chromosome 11 Contains part of the Car10 gene for carbonic anhydrase 10, complete sequence Length = 114636 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 tgtaaagccaacactaaca 83 ||||||||||||||||||| Sbjct: 98614 tgtaaagccaacactaaca 98632
>emb|AL845328.7| Zebrafish DNA sequence from clone DKEY-16K6 in linkage group 8 Contains the 3' part of a novel gene similar to human and mouse CAPZA (capping protein (actin filament) muscle Z-line, alpha), a novel gene and two CpG islands, complete sequence Length = 196248 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 131 aacaatggattttagcagc 149 ||||||||||||||||||| Sbjct: 61333 aacaatggattttagcagc 61351
>emb|BX663525.6| Zebrafish DNA sequence from clone DKEY-97A13 in linkage group 2, complete sequence Length = 261927 Score = 38.2 bits (19), Expect = 8.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 62 caatgtaaagccaacactaacat 84 ||||| ||||||||||||||||| Sbjct: 177441 caatggaaagccaacactaacat 177419
>ref|NM_137243.2| Drosophila melanogaster Cysteinyl-tRNA synthetase CG8431-RA (Aats-cys), mRNA Length = 2454 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atctcttgcattaactaaa 53 ||||||||||||||||||| Sbjct: 2401 atctcttgcattaactaaa 2383
>dbj|AK132667.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4921517C14 product:testis expressed gene 15, full insert sequence Length = 2112 Score = 38.2 bits (19), Expect = 8.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 65 tgtaaagccaacactaacataca 87 ||||||||||||||| ||||||| Sbjct: 791 tgtaaagccaacactgacataca 813
>gb|AC104612.1| Drosophila melanogaster, chromosome 2R, region 52F-53A, BAC clone BACR29I14, complete sequence Length = 169877 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atctcttgcattaactaaa 53 ||||||||||||||||||| Sbjct: 118153 atctcttgcattaactaaa 118171
>dbj|AK039768.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330105L03 product:unclassifiable, full insert sequence Length = 3742 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 tgtaaagccaacactaaca 83 ||||||||||||||||||| Sbjct: 2668 tgtaaagccaacactaaca 2686
>gb|AF285589.1|AF285589 Mus musculus testis protein TEX15 (Tex15) mRNA, complete cds Length = 8422 Score = 38.2 bits (19), Expect = 8.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 65 tgtaaagccaacactaacataca 87 ||||||||||||||| ||||||| Sbjct: 4045 tgtaaagccaacactgacataca 4067
>gb|AC007038.6| Homo sapiens BAC clone RP11-260M2 from 2, complete sequence Length = 99031 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 aaagccaacactaacatac 86 ||||||||||||||||||| Sbjct: 24300 aaagccaacactaacatac 24318
>gb|AC007572.5|AC007572 Drosophila melanogaster, chromosome 2R, region 53A-53B, BAC clone BACR21B04, complete sequence Length = 156823 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atctcttgcattaactaaa 53 ||||||||||||||||||| Sbjct: 615 atctcttgcattaactaaa 597
>gb|AC068600.5| Homo sapiens BAC clone RP11-567N20 from 2, complete sequence Length = 136657 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 gtaataacttggtttctct 22 ||||||||||||||||||| Sbjct: 32845 gtaataacttggtttctct 32827
>gb|AC154378.2| Mus musculus BAC clone RP23-64O5 from 17, complete sequence Length = 232701 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 ataacttggtttctctcaa 25 ||||||||||||||||||| Sbjct: 175074 ataacttggtttctctcaa 175056
>emb|BX005161.6| Zebrafish DNA sequence from clone CH211-168N16 in linkage group 20, complete sequence Length = 150884 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 136 tggattttagcagccacac 154 ||||||||||||||||||| Sbjct: 95632 tggattttagcagccacac 95614
>gb|AF132160.1|AF132160 Drosophila melanogaster clone LD21177 unknown mRNA Length = 2448 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atctcttgcattaactaaa 53 ||||||||||||||||||| Sbjct: 2376 atctcttgcattaactaaa 2358
>gb|AE003808.4| Drosophila melanogaster chromosome 2R, section 42 of 73 of the complete sequence Length = 260367 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 atctcttgcattaactaaa 53 ||||||||||||||||||| Sbjct: 203119 atctcttgcattaactaaa 203101
>emb|CT033750.18| Mouse DNA sequence from clone RP23-263M5 on chromosome 17, complete sequence Length = 268616 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 ataacttggtttctctcaa 25 ||||||||||||||||||| Sbjct: 20757 ataacttggtttctctcaa 20739
>emb|CR792434.8| Zebrafish DNA sequence from clone CH211-219O9 in linkage group 3, complete sequence Length = 69225 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 ccaacactaacatacaata 90 ||||||||||||||||||| Sbjct: 61565 ccaacactaacatacaata 61583
>gb|AC004320.1|AC004320 Drosophila melanogaster (P1 DS07424 (D214)) DNA sequence, complete sequence Length = 63433 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 atctcttgcattaactaaa 53 ||||||||||||||||||| Sbjct: 47821 atctcttgcattaactaaa 47839
>dbj|AP004896.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT16I07, TM0040, complete sequence Length = 92281 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 ttcatctcttgcattaact 50 ||||||||||||||||||| Sbjct: 10254 ttcatctcttgcattaact 10236
>emb|AL773567.16| Mouse DNA sequence from clone RP23-204P1 on chromosome 4, complete sequence Length = 189970 Score = 38.2 bits (19), Expect = 8.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 113 aacaacatactcgtactta 131 ||||||||||||||||||| Sbjct: 54177 aacaacatactcgtactta 54159 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,370,186 Number of Sequences: 3902068 Number of extensions: 1370186 Number of successful extensions: 93298 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93236 Number of HSP's gapped (non-prelim): 62 length of query: 177 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 155 effective length of database: 17,147,199,772 effective search space: 2657815964660 effective search space used: 2657815964660 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)