| Clone Name | rbast19f06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U32624.1|SBU32624 Sorghum bicolor N-hydroxylating, multifunctional cytochrome P-450 (CYP79) mRNA, complete cds Length = 2099 Score = 119 bits (60), Expect = 8e-24 Identities = 108/124 (87%) Strand = Plus / Minus Query: 256 ccaggtgaagccatggaggagcctgccgaaaagcatgacggtcatggccgtgccgagcat 315 ||||||||| || || |||||||| ||||| ||||||||| ||||||| ||||||||| Sbjct: 1731 ccaggtgaacccctgcaggagccttccgaagagcatgacgctcatggcggtgccgagcga 1672 Query: 316 gggggcgacgcagccgcggcggcctgtactgaaggagatgaagcgcagctcgttctcggt 375 | ||||| ||||||||||||||| || |||||||||||||| ||||| ||||||||||| Sbjct: 1671 cgcggcgatgcagccgcggcggccggtgctgaaggagatgaaccgcaggtcgttctcggt 1612 Query: 376 gagc 379 |||| Sbjct: 1611 gagc 1608
>gb|DQ409175.1| Bambusa ventricosa cytochrome P450 mRNA, complete cds Length = 1913 Score = 95.6 bits (48), Expect = 1e-16 Identities = 105/124 (84%) Strand = Plus / Minus Query: 256 ccaggtgaagccatggaggagcctgccgaaaagcatgacggtcatggccgtgccgagcat 315 |||||||||||| || |||||||||||||| ||||| ||| |||| ||||| |||||| Sbjct: 1629 ccaggtgaagccctgcaggagcctgccgaagagcatcacgctcatcgccgtcccgagcga 1570 Query: 316 gggggcgacgcagccgcggcggcctgtactgaaggagatgaagcgcagctcgttctcggt 375 | |||| ||| |||||||| || || |||||||||||||| |||||||||||||| || Sbjct: 1569 cgccgcgatgcacccgcggcgcccggtgctgaaggagatgaaccgcagctcgttctccgt 1510 Query: 376 gagc 379 |||| Sbjct: 1509 gagc 1506 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Minus Query: 144 ggtagaggtgcagcggcaggcgtggcttggcgtgcagcaccagcggcttagcca 197 |||||||||||| ||||||||| |||| ||||||||||||||||||||| |||| Sbjct: 1741 ggtagaggtgcaccggcaggcgcggctgggcgtgcagcaccagcggcttggcca 1688
>gb|AC121119.12| Mus musculus chromosome 1, clone RP23-395D10, complete sequence Length = 221436 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 acttattaatggatcaatat 28 |||||||||||||||||||| Sbjct: 145210 acttattaatggatcaatat 145191
>gb|AC099589.12| Mus musculus chromosome 1, clone RP23-337A19, complete sequence Length = 264062 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 catggacatgagcagtagca 67 |||||||||||||||||||| Sbjct: 158347 catggacatgagcagtagca 158328
>gb|AC129190.3| Mus musculus BAC clone RP24-79D2 from chromosome 1, complete sequence Length = 236342 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 catggacatgagcagtagca 67 |||||||||||||||||||| Sbjct: 135086 catggacatgagcagtagca 135067
>gb|AC154119.8| Mus musculus chromosome 1, clone RP24-103A6, complete sequence Length = 159230 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 aacttattaatggatcaata 27 |||||||||||||||||||| Sbjct: 15355 aacttattaatggatcaata 15374
>ref|XM_565547.1| Anopheles gambiae str. PEST ENSANGP00000028531 (ENSANGG00000004749), partial mRNA Length = 3024 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 ccgcctgctccttccagatg 408 |||||||||||||||||||| Sbjct: 2362 ccgcctgctccttccagatg 2343
>ref|XM_307919.2| Anopheles gambiae str. PEST ENSANGP00000006240 (ENSANGG00000004749), partial mRNA Length = 3897 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 ccgcctgctccttccagatg 408 |||||||||||||||||||| Sbjct: 2755 ccgcctgctccttccagatg 2736 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,805,367 Number of Sequences: 3902068 Number of extensions: 2805367 Number of successful extensions: 57918 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57907 Number of HSP's gapped (non-prelim): 10 length of query: 422 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 400 effective length of database: 17,147,199,772 effective search space: 6858879908800 effective search space used: 6858879908800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)