ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast19f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U32624.1|SBU32624 Sorghum bicolor N-hydroxylating, multifunct... 119 8e-24
2gb|DQ409175.1| Bambusa ventricosa cytochrome P450 mRNA, complete... 96 1e-16
3gb|AC121119.12| Mus musculus chromosome 1, clone RP23-395D10, co... 40 5.7
4gb|AC099589.12| Mus musculus chromosome 1, clone RP23-337A19, co... 40 5.7
5gb|AC129190.3| Mus musculus BAC clone RP24-79D2 from chromosome ... 40 5.7
6gb|AC154119.8| Mus musculus chromosome 1, clone RP24-103A6, comp... 40 5.7
7ref|XM_565547.1| Anopheles gambiae str. PEST ENSANGP00000028531 ... 40 5.7
8ref|XM_307919.2| Anopheles gambiae str. PEST ENSANGP00000006240 ... 40 5.7

>gb|U32624.1|SBU32624 Sorghum bicolor N-hydroxylating, multifunctional cytochrome P-450
            (CYP79) mRNA, complete cds
          Length = 2099

 Score =  119 bits (60), Expect = 8e-24
 Identities = 108/124 (87%)
 Strand = Plus / Minus

                                                                        
Query: 256  ccaggtgaagccatggaggagcctgccgaaaagcatgacggtcatggccgtgccgagcat 315
            ||||||||| || || |||||||| ||||| ||||||||| ||||||| |||||||||  
Sbjct: 1731 ccaggtgaacccctgcaggagccttccgaagagcatgacgctcatggcggtgccgagcga 1672

                                                                        
Query: 316  gggggcgacgcagccgcggcggcctgtactgaaggagatgaagcgcagctcgttctcggt 375
             | ||||| ||||||||||||||| || |||||||||||||| ||||| |||||||||||
Sbjct: 1671 cgcggcgatgcagccgcggcggccggtgctgaaggagatgaaccgcaggtcgttctcggt 1612

                
Query: 376  gagc 379
            ||||
Sbjct: 1611 gagc 1608



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>gb|DQ409175.1| Bambusa ventricosa cytochrome P450 mRNA, complete cds
          Length = 1913

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 105/124 (84%)
 Strand = Plus / Minus

                                                                        
Query: 256  ccaggtgaagccatggaggagcctgccgaaaagcatgacggtcatggccgtgccgagcat 315
            |||||||||||| || |||||||||||||| ||||| ||| |||| ||||| ||||||  
Sbjct: 1629 ccaggtgaagccctgcaggagcctgccgaagagcatcacgctcatcgccgtcccgagcga 1570

                                                                        
Query: 316  gggggcgacgcagccgcggcggcctgtactgaaggagatgaagcgcagctcgttctcggt 375
             |  |||| ||| |||||||| || || |||||||||||||| |||||||||||||| ||
Sbjct: 1569 cgccgcgatgcacccgcggcgcccggtgctgaaggagatgaaccgcagctcgttctccgt 1510

                
Query: 376  gagc 379
            ||||
Sbjct: 1509 gagc 1506



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                  
Query: 144  ggtagaggtgcagcggcaggcgtggcttggcgtgcagcaccagcggcttagcca 197
            |||||||||||| ||||||||| |||| ||||||||||||||||||||| ||||
Sbjct: 1741 ggtagaggtgcaccggcaggcgcggctgggcgtgcagcaccagcggcttggcca 1688



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>gb|AC121119.12| Mus musculus chromosome 1, clone RP23-395D10, complete sequence
          Length = 221436

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      acttattaatggatcaatat 28
              ||||||||||||||||||||
Sbjct: 145210 acttattaatggatcaatat 145191



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>gb|AC099589.12| Mus musculus chromosome 1, clone RP23-337A19, complete sequence
          Length = 264062

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     catggacatgagcagtagca 67
              ||||||||||||||||||||
Sbjct: 158347 catggacatgagcagtagca 158328



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>gb|AC129190.3| Mus musculus BAC clone RP24-79D2 from chromosome 1, complete sequence
          Length = 236342

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     catggacatgagcagtagca 67
              ||||||||||||||||||||
Sbjct: 135086 catggacatgagcagtagca 135067



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>gb|AC154119.8| Mus musculus chromosome 1, clone RP24-103A6, complete sequence
          Length = 159230

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     aacttattaatggatcaata 27
             ||||||||||||||||||||
Sbjct: 15355 aacttattaatggatcaata 15374



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>ref|XM_565547.1| Anopheles gambiae str. PEST ENSANGP00000028531 (ENSANGG00000004749),
            partial mRNA
          Length = 3024

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 389  ccgcctgctccttccagatg 408
            ||||||||||||||||||||
Sbjct: 2362 ccgcctgctccttccagatg 2343



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>ref|XM_307919.2| Anopheles gambiae str. PEST ENSANGP00000006240 (ENSANGG00000004749),
            partial mRNA
          Length = 3897

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 389  ccgcctgctccttccagatg 408
            ||||||||||||||||||||
Sbjct: 2755 ccgcctgctccttccagatg 2736


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,805,367
Number of Sequences: 3902068
Number of extensions: 2805367
Number of successful extensions: 57918
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57907
Number of HSP's gapped (non-prelim): 10
length of query: 422
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 400
effective length of database: 17,147,199,772
effective search space: 6858879908800
effective search space used: 6858879908800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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