| Clone Name | rbast19d12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY108012.1| Zea mays PCO073700 mRNA sequence Length = 471 Score = 75.8 bits (38), Expect = 8e-11 Identities = 68/78 (87%) Strand = Plus / Minus Query: 250 cccgaccttgttgacaagcgccagggcgttgctggtgacctgggcgacctccacgacctt 309 ||||||||||||||| || || || ||||||||||||||||| |||||||| |||||| | Sbjct: 201 cccgaccttgttgacgagtgcgagcgcgttgctggtgacctgcgcgacctcgacgaccct 142 Query: 310 gctccggatggcggcgcg 327 || |||| ||||||||| Sbjct: 141 gccgcggacggcggcgcg 124
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 65.9 bits (33), Expect = 8e-08 Identities = 57/65 (87%) Strand = Plus / Plus Query: 259 gttgacaagcgccagggcgttgctggtgacctgggcgacctccacgaccttgctccggat 318 |||||| || || ||||||||||||||||||||||||||||| |||| ||| | ||||| Sbjct: 29590272 gttgacgagggcgagggcgttgctggtgacctgggcgacctcgacgatcttaccgcggat 29590331 Query: 319 ggcgg 323 ||||| Sbjct: 29590332 ggcgg 29590336
>dbj|AP004329.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1663_H12 Length = 125422 Score = 65.9 bits (33), Expect = 8e-08 Identities = 57/65 (87%) Strand = Plus / Plus Query: 259 gttgacaagcgccagggcgttgctggtgacctgggcgacctccacgaccttgctccggat 318 |||||| || || ||||||||||||||||||||||||||||| |||| ||| | ||||| Sbjct: 33857 gttgacgagggcgagggcgttgctggtgacctgggcgacctcgacgatcttaccgcggat 33916 Query: 319 ggcgg 323 ||||| Sbjct: 33917 ggcgg 33921
>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0655A07 Length = 172473 Score = 65.9 bits (33), Expect = 8e-08 Identities = 57/65 (87%) Strand = Plus / Plus Query: 259 gttgacaagcgccagggcgttgctggtgacctgggcgacctccacgaccttgctccggat 318 |||||| || || ||||||||||||||||||||||||||||| |||| ||| | ||||| Sbjct: 154778 gttgacgagggcgagggcgttgctggtgacctgggcgacctcgacgatcttaccgcggat 154837 Query: 319 ggcgg 323 ||||| Sbjct: 154838 ggcgg 154842
>dbj|AK069642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026F11, full insert sequence Length = 895 Score = 65.9 bits (33), Expect = 8e-08 Identities = 57/65 (87%) Strand = Plus / Minus Query: 259 gttgacaagcgccagggcgttgctggtgacctgggcgacctccacgaccttgctccggat 318 |||||| || || ||||||||||||||||||||||||||||| |||| ||| | ||||| Sbjct: 662 gttgacgagggcgagggcgttgctggtgacctgggcgacctcgacgatcttaccgcggat 603 Query: 319 ggcgg 323 ||||| Sbjct: 602 ggcgg 598
>ref|NM_195208.1| Oryza sativa (japonica cultivar-group) putative ripening-related protein (OSJNBa0029P16.10), mRNA Length = 657 Score = 46.1 bits (23), Expect = 0.070 Identities = 26/27 (96%) Strand = Plus / Minus Query: 260 ttgacaagcgccagggcgttgctggtg 286 ||||||||||| ||||||||||||||| Sbjct: 641 ttgacaagcgcaagggcgttgctggtg 615
>gb|AC093568.2| Oryza sativa chromosome 10 clone OSJNBa0029P16, complete sequence Length = 173644 Score = 46.1 bits (23), Expect = 0.070 Identities = 26/27 (96%) Strand = Plus / Minus Query: 260 ttgacaagcgccagggcgttgctggtg 286 ||||||||||| ||||||||||||||| Sbjct: 59331 ttgacaagcgcaagggcgttgctggtg 59305
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.070 Identities = 26/27 (96%) Strand = Plus / Plus Query: 260 ttgacaagcgccagggcgttgctggtg 286 ||||||||||| ||||||||||||||| Sbjct: 5484317 ttgacaagcgcaagggcgttgctggtg 5484343
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.070 Identities = 26/27 (96%) Strand = Plus / Plus Query: 260 ttgacaagcgccagggcgttgctggtg 286 ||||||||||| ||||||||||||||| Sbjct: 5485104 ttgacaagcgcaagggcgttgctggtg 5485130
>gb|AC004802.1| Homo sapiens 12p13.3 RPCI4-773N5 (Roswell Park Cancer Institute Human PAC library) complete sequence Length = 57304 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 32 tcttcattgattgtcttagcta 53 |||||||||||||||||||||| Sbjct: 14291 tcttcattgattgtcttagcta 14270
>gb|AC010188.29| Homo sapiens 12 BAC RP11-225E24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158591 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 291 gggcgacctccacgaccttgct 312 |||||||||||||||||||||| Sbjct: 27474 gggcgacctccacgaccttgct 27495
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 269 gccagggcgttgctggtgacct 290 |||||||||||||||||||||| Sbjct: 4931813 gccagggcgttgctggtgacct 4931792
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 266 agcgccagggcgttgctggtga 287 |||||||||||||||||||||| Sbjct: 15868537 agcgccagggcgttgctggtga 15868558
>gb|AC046135.15| Homo sapiens 12 BAC RP11-295B8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175833 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 291 gggcgacctccacgaccttgct 312 |||||||||||||||||||||| Sbjct: 139961 gggcgacctccacgaccttgct 139940
>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1081_G10 Length = 107955 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 266 agcgccagggcgttgctggtga 287 |||||||||||||||||||||| Sbjct: 31663 agcgccagggcgttgctggtga 31684
>dbj|AK072369.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064J16, full insert sequence Length = 2346 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 266 agcgccagggcgttgctggtga 287 |||||||||||||||||||||| Sbjct: 852 agcgccagggcgttgctggtga 831
>ref|XM_470980.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 642 Score = 42.1 bits (21), Expect = 1.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 257 ttgttgacaagcgccagggcgttgctggtgacctggg 293 |||||||| || || ||||||||||||||| |||||| Sbjct: 617 ttgttgacgagggcgagggcgttgctggtggcctggg 581
>gb|AC183274.3| Pan troglodytes BAC clone CH251-156F5 from chromosome 7, complete sequence Length = 163934 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 cttcattgattgtcttagcta 53 ||||||||||||||||||||| Sbjct: 102 cttcattgattgtcttagcta 82
>gb|AC069152.5| Homo sapiens BAC clone RP11-331L17 from UL, complete sequence Length = 191433 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 cttcattgattgtcttagcta 53 ||||||||||||||||||||| Sbjct: 115172 cttcattgattgtcttagcta 115192
>gb|AC006015.5| Homo sapiens PAC clone RP5-965K10 from 7, complete sequence Length = 112417 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 cttcattgattgtcttagcta 53 ||||||||||||||||||||| Sbjct: 80795 cttcattgattgtcttagcta 80815
>gb|AC161579.4| Mus musculus chromosome 19, clone RP23-298M4, complete sequence Length = 188366 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 140 cagagtacatgacccaagattaaag 164 |||||||||| |||||||||||||| Sbjct: 106034 cagagtacataacccaagattaaag 106010
>gb|AY032678.1| Toxoplasma gondii membrane skeletal protein IMC1 (IMC1) mRNA, complete cds Length = 2720 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 285 tgacctgggcgacctccacgacctt 309 |||||||||||||||| |||||||| Sbjct: 943 tgacctgggcgacctcaacgacctt 919
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 257 ttgttgacaagcgccagggcgttgctggtgacctggg 293 |||||||| || || ||||||||||||||| |||||| Sbjct: 376908 ttgttgacgagggcgagggcgttgctggtggcctggg 376944
>gb|AC122133.4| Homo sapiens BAC clone RP11-220H4 from 7, complete sequence Length = 191103 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 cttcattgattgtcttagcta 53 ||||||||||||||||||||| Sbjct: 102 cttcattgattgtcttagcta 82
>dbj|AK111054.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-C11, full insert sequence Length = 668 Score = 42.1 bits (21), Expect = 1.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 257 ttgttgacaagcgccagggcgttgctggtgacctggg 293 |||||||| || || ||||||||||||||| |||||| Sbjct: 509 ttgttgacgagggcgagggcgttgctggtggcctggg 473
>emb|AL662992.3|OSJN00193 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004G23, complete sequence Length = 115972 Score = 42.1 bits (21), Expect = 1.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 257 ttgttgacaagcgccagggcgttgctggtgacctggg 293 |||||||| || || ||||||||||||||| |||||| Sbjct: 61567 ttgttgacgagggcgagggcgttgctggtggcctggg 61603
>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13, complete sequence Length = 130249 Score = 42.1 bits (21), Expect = 1.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 257 ttgttgacaagcgccagggcgttgctggtgacctggg 293 |||||||| || || ||||||||||||||| |||||| Sbjct: 15660 ttgttgacgagggcgagggcgttgctggtggcctggg 15696
>gb|AC154326.1| Mus musculus chromosome 16 clone RP24-496J3, complete sequence Length = 167679 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aagaacacatggaaactgaa 90 |||||||||||||||||||| Sbjct: 12623 aagaacacatggaaactgaa 12642
>gb|AY739095.1| Takifugu rubripes frMCM8, frQ9UJA2, frPLCB1, frAL834445, frCDC5L, and frSUPTH3 genes, complete sequence; frRUNT (frRUNT) gene, complete cds; and frFSTL6 gene, complete sequence Length = 109075 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 cattaattacactcttcatt 39 |||||||||||||||||||| Sbjct: 30211 cattaattacactcttcatt 30192
>gb|AC132484.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0038E22, complete sequence Length = 150766 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 cagaagaacatgagcagagt 145 |||||||||||||||||||| Sbjct: 74046 cagaagaacatgagcagagt 74065
>emb|Z93015.9|HS169I5 Human DNA sequence from clone RP1-169I5 on chromosome Xp11 Contains the 3' end of the DDX3 gene for DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, the NYX gene for nyctalopin, a gem (nuclear organelle) associated protein 7 (GEMIN7) pseudogene and two CpG islands, complete sequence Length = 133568 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 gaacacatggaaactgaaat 92 |||||||||||||||||||| Sbjct: 124287 gaacacatggaaactgaaat 124306
>emb|BX890620.9| Zebrafish DNA sequence from clone DKEY-48C14 in linkage group 14, complete sequence Length = 214857 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 47 ttagctacattttacaggcacatc 70 ||||||||||||||||| |||||| Sbjct: 17546 ttagctacattttacagccacatc 17569
>gb|AC096645.2| Homo sapiens chromosome 1 clone RP11-450D21, complete sequence Length = 167878 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ttaattacactcttcattga 41 |||||||||||||||||||| Sbjct: 6740 ttaattacactcttcattga 6759
>gb|AC060773.10| Homo sapiens chromosome 15, clone RP11-741G21, complete sequence Length = 200814 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 cattaattacactcttcatt 39 |||||||||||||||||||| Sbjct: 62107 cattaattacactcttcatt 62088
>gb|AC118554.2| Homo sapiens chromosome 1 clone RP11-61E2, complete sequence Length = 34319 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ttaattacactcttcattga 41 |||||||||||||||||||| Sbjct: 32417 ttaattacactcttcattga 32436
>gb|AC090984.5| Homo sapiens chromosome 15, clone RP11-500C12, complete sequence Length = 190664 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 cattaattacactcttcatt 39 |||||||||||||||||||| Sbjct: 25916 cattaattacactcttcatt 25935
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 cagaagaacatgagcagagt 145 |||||||||||||||||||| Sbjct: 9710954 cagaagaacatgagcagagt 9710973
>gb|AC154678.2| Mus musculus BAC clone RP24-302G10 from chromosome 16, complete sequence Length = 198982 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aagaacacatggaaactgaa 90 |||||||||||||||||||| Sbjct: 28283 aagaacacatggaaactgaa 28264
>ref|XM_308358.2| Anopheles gambiae str. PEST ENSANGP00000019092 (ENSANGG00000016603), partial mRNA Length = 528 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 aagcgccagggcgttgctgg 284 |||||||||||||||||||| Sbjct: 466 aagcgccagggcgttgctgg 485 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,458,224 Number of Sequences: 3902068 Number of extensions: 2458224 Number of successful extensions: 63791 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63568 Number of HSP's gapped (non-prelim): 223 length of query: 327 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 305 effective length of database: 17,147,199,772 effective search space: 5229895930460 effective search space used: 5229895930460 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)