ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast19d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1M3K14_MOUSE (Q9WUL6) Mitogen-activated protein kinase kinase kin... 33 0.18
2ADEC2_BRAJA (Q89H53) Adenine deaminase 2 (EC 3.5.4.2) (Adenase 2... 30 1.2
3QCRB_STRLI (Q9ZFB6) Ubiquinol-cytochrome c reductase cytochrome ... 28 5.9
4SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine pr... 28 7.7

>M3K14_MOUSE (Q9WUL6) Mitogen-activated protein kinase kinase kinase 14 (EC|
           2.7.11.25) (NF-kappa beta-inducing kinase)
           (Serine/threonine-protein kinase NIK)
          Length = 942

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 193 AIHAMANMRPPWTGDGMDGRPPRQPRATRHHTRTEP 300
           A+  +  ++ PW G+  + RPP Q +AT H T   P
Sbjct: 656 ALQEVGGLKSPWKGEYKEPRPPPQDQATCHQTLPTP 691



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>ADEC2_BRAJA (Q89H53) Adenine deaminase 2 (EC 3.5.4.2) (Adenase 2) (Adenine|
           aminase 2)
          Length = 625

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -1

Query: 300 WFSARVMSRGPRLPRWPAVHSVSCPRRPHISHGMYGRDER---KADMLVVTGVE 148
           WF AR   RG  L  +P   S   P       G YGRDE+    A+ L+VTG++
Sbjct: 142 WFEAR--RRGSPLKIFPQPGSAVPPTAYEWGGGWYGRDEQARFMAESLMVTGLD 193



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>QCRB_STRLI (Q9ZFB6) Ubiquinol-cytochrome c reductase cytochrome b subunit|
          Length = 549

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 112 NTAELTTLPLFAFDAGDY*HICLPLVSAIHAMANMRPPWTGDGMDGRPPRQPRA 273
           N   +  LP++   AG +  +   ++S + A+A + P W   G  G P R P A
Sbjct: 255 NVVGMPLLPVYTAKAGGFFFLVFGVISVVSAIATINPIWP-SGPTG-PTRSPPA 306



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>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase|
           (EC 2.7.11.1) (Aortic preferentially expressed protein
           1) (APEG-1)
          Length = 3262

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 193 AIHAMANMRPPWTGDGMDGRPPRQPRATRHHTRTEP 300
           A+   A   PP +G G  G  P +PR+     RTEP
Sbjct: 552 AVSPAATQPPPPSGAGKSGDEPGRPRSRGPVGRTEP 587


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,151,707
Number of Sequences: 219361
Number of extensions: 740294
Number of successful extensions: 2132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2132
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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