ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast19d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL035653.12|HS67E13 Human DNA sequence from clone RP1-67E13 ... 42 1.0
2emb|AJ251438.1|STE251438 Streptomyces tendae Tue901 nikI gene, n... 42 1.0
3ref|NM_125803.3| Arabidopsis thaliana 1-phosphatidylinositol 4-k... 40 4.0
4gb|AC166902.2| Mus musculus BAC clone RP24-425L9 from chromosome... 40 4.0
5emb|AJ002685.1|ATPI4KG Arabidopsis thaliana mRNA for Phosphatidy... 40 4.0
6gb|AY139795.1| Arabidopsis thaliana At5g64070/MHJ24_5 mRNA, comp... 40 4.0
7gb|AF462854.1|AF462854 Arabidopsis thaliana phosphatidylinositol... 40 4.0
8dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 4.0
9emb|BX005304.8| Mouse DNA sequence from clone RP23-328P5 on chro... 40 4.0
10dbj|AB008266.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 4.0

>emb|AL035653.12|HS67E13 Human DNA sequence from clone RP1-67E13 on chromosome 6p24.3-25.3
             Contains a novel pseudogene, part of a novel gene and CpG
             islands, complete sequence
          Length = 133765

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 99    acagaagcagatgaacacagc 119
             |||||||||||||||||||||
Sbjct: 77231 acagaagcagatgaacacagc 77251



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>emb|AJ251438.1|STE251438 Streptomyces tendae Tue901 nikI gene, nikJ gene, nikK gene, nikL
            gene, nikM gene, nikN gene, nikO gene, ORF1 and ORF2
          Length = 11591

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 246  cggccggccaccgcggcaacc 266
            |||||||||||||||||||||
Sbjct: 9514 cggccggccaccgcggcaacc 9534



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>ref|NM_125803.3| Arabidopsis thaliana 1-phosphatidylinositol 4-kinase AT5G64070 mRNA,
            complete cds
          Length = 4426

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 50   cattcctgatccatcagtcc 69
            ||||||||||||||||||||
Sbjct: 2848 cattcctgatccatcagtcc 2867



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>gb|AC166902.2| Mus musculus BAC clone RP24-425L9 from chromosome 9, complete sequence
          Length = 184017

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 113    acacagctgagctaactaca 132
              ||||||||||||||||||||
Sbjct: 160463 acacagctgagctaactaca 160444



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>emb|AJ002685.1|ATPI4KG Arabidopsis thaliana mRNA for Phosphatidylinositol 4-Kinase
          Length = 4349

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 50   cattcctgatccatcagtcc 69
            ||||||||||||||||||||
Sbjct: 2808 cattcctgatccatcagtcc 2827



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>gb|AY139795.1| Arabidopsis thaliana At5g64070/MHJ24_5 mRNA, complete cds
          Length = 3366

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 50   cattcctgatccatcagtcc 69
            ||||||||||||||||||||
Sbjct: 2304 cattcctgatccatcagtcc 2323



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>gb|AF462854.1|AF462854 Arabidopsis thaliana phosphatidylinositol 4-kinase mRNA, complete cds
          Length = 4351

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 50   cattcctgatccatcagtcc 69
            ||||||||||||||||||||
Sbjct: 2848 cattcctgatccatcagtcc 2867



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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 141    cttcgccttcgacgccggtg 160
              ||||||||||||||||||||
Sbjct: 300168 cttcgccttcgacgccggtg 300149



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>emb|BX005304.8| Mouse DNA sequence from clone RP23-328P5 on chromosome 2, complete
             sequence
          Length = 200574

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    aaaaacaagattactacatt 53
             ||||||||||||||||||||
Sbjct: 84228 aaaaacaagattactacatt 84247



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>dbj|AB008266.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHJ24
          Length = 48622

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    cattcctgatccatcagtcc 69
             ||||||||||||||||||||
Sbjct: 14013 cattcctgatccatcagtcc 13994


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,041,470
Number of Sequences: 3902068
Number of extensions: 2041470
Number of successful extensions: 37250
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37214
Number of HSP's gapped (non-prelim): 36
length of query: 303
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 281
effective length of database: 17,147,199,772
effective search space: 4818363135932
effective search space used: 4818363135932
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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