ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast19a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC074124.4| Homo sapiens BAC clone RP11-763F8 from 4, complet... 38 1.6
2gb|AC170425.1| Rhesus Macaque BAC CH250-10K16 (Children's Hospi... 36 6.2
3gb|AC025366.11| Homo sapiens chromosome 8, clone RP11-238I10, co... 36 6.2
4dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 36 6.2
5gb|AC084290.15| Homo sapiens 12 BAC RP11-568G5 (Roswell Park Can... 36 6.2
6gb|AC154572.2| Mus musculus BAC clone RP23-392G15 from chromosom... 36 6.2
7gb|AC157528.2| Pan troglodytes BAC clone CH251-422M6 from chromo... 36 6.2
8gb|AC161620.5| Pan troglodytes BAC clone CH251-232H7 from chromo... 36 6.2
9gb|AY116500.1| Sterkiella histriomuscorum macronuclear telomeras... 36 6.2
10gb|AF060230.1|AF060230 Oxytricha trifallax telomerase reverse tr... 36 6.2

>gb|AC074124.4| Homo sapiens BAC clone RP11-763F8 from 4, complete sequence
          Length = 165723

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    tgtatctaaaactcatcaa 38
             |||||||||||||||||||
Sbjct: 17639 tgtatctaaaactcatcaa 17621



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>gb|AC170425.1| Rhesus Macaque  BAC CH250-10K16 (Children's Hospital Oakland Research
              Institute Rhesus macaque Adult Male BAC Library) complete
              sequence
          Length = 153799

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 26     taaaactcatcaaatcac 43
              ||||||||||||||||||
Sbjct: 147988 taaaactcatcaaatcac 147971



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>gb|AC025366.11| Homo sapiens chromosome 8, clone RP11-238I10, complete sequence
          Length = 157390

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 20     tgtatctaaaactcatca 37
              ||||||||||||||||||
Sbjct: 106129 tgtatctaaaactcatca 106146



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>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence
          Length = 1877212

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 26     taaaactcatcaaatcac 43
              ||||||||||||||||||
Sbjct: 658796 taaaactcatcaaatcac 658813



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>gb|AC084290.15| Homo sapiens 12 BAC RP11-568G5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 55001

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 26    taaaactcatcaaatcac 43
             ||||||||||||||||||
Sbjct: 22121 taaaactcatcaaatcac 22138



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>gb|AC154572.2| Mus musculus BAC clone RP23-392G15 from chromosome 13, complete
             sequence
          Length = 185090

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 17    ccatgtatctaaaactca 34
             ||||||||||||||||||
Sbjct: 13890 ccatgtatctaaaactca 13907



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>gb|AC157528.2| Pan troglodytes BAC clone CH251-422M6 from chromosome unknown, complete
              sequence
          Length = 154857

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 26     taaaactcatcaaatcac 43
              ||||||||||||||||||
Sbjct: 149030 taaaactcatcaaatcac 149013



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>gb|AC161620.5| Pan troglodytes BAC clone CH251-232H7 from chromosome unknown, complete
              sequence
          Length = 204271

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 26     taaaactcatcaaatcac 43
              ||||||||||||||||||
Sbjct: 109369 taaaactcatcaaatcac 109352



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>gb|AY116500.1| Sterkiella histriomuscorum macronuclear telomerase gene, complete
          cds
          Length = 3642

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                
Query: 26 taaaactcatcaaatcactcaa 47
          |||||||||||| |||||||||
Sbjct: 39 taaaactcatcatatcactcaa 18



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>gb|AF060230.1|AF060230 Oxytricha trifallax telomerase reverse transciptase (TERT) gene,
          complete cds
          Length = 3642

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                
Query: 26 taaaactcatcaaatcactcaa 47
          |||||||||||| |||||||||
Sbjct: 39 taaaactcatcatatcactcaa 18


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 284,574
Number of Sequences: 3902068
Number of extensions: 284574
Number of successful extensions: 72389
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72358
Number of HSP's gapped (non-prelim): 31
length of query: 48
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 28
effective length of database: 17,155,003,908
effective search space: 480340109424
effective search space used: 480340109424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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