ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast19a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467477.1| Oryza sativa (japonica cultivar-group), mRNA 349 5e-93
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 349 5e-93
3dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic D... 349 5e-93
4dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic D... 349 5e-93
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
6dbj|AP004750.2| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
7ref|XM_754026.1| Ustilago maydis 521 hypothetical protein (UM029... 46 0.100
8ref|NM_184319.2| Oryza sativa (japonica cultivar-group), mRNA 46 0.100
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.100
10dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.100
11dbj|AP002483.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.100
12dbj|AK105664.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.100
13dbj|AK102216.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.100
14dbj|AK070036.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.100
15dbj|AK058745.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.100
16gb|AY106418.1| Zea mays PCO154787 mRNA sequence 46 0.100
17gb|AF023472.1|AF023472 Hordeum vulgare peptide transporter (ptr1... 46 0.100
18gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 44 0.39
19ref|XM_969871.1| PREDICTED: Tribolium castaneum similar to Later... 44 0.39
20emb|BX324216.9| Zebrafish DNA sequence from clone CH211-222K6 in... 44 0.39
21gb|AC150866.2| Bos taurus BAC CH240-290G4 (Children's Hospital ... 42 1.6
22ref|XM_956565.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.6
23ref|XM_326538.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.6
24emb|AL670006.1|NCG15G9 Neurospora crassa DNA linkage group V cos... 42 1.6
25gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 1.6
26dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 42 1.6
27dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.6
28gb|AE005033.1| Halobacterium sp. NRC-1 section 64 of 170 of the ... 42 1.6
29dbj|AB026655.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 1.6
30ref|XM_480011.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.2
31ref|XM_467231.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.2
32ref|XM_592827.2| PREDICTED: Bos taurus similar to TNF receptor-a... 40 6.2
33ref|XM_581195.2| PREDICTED: Bos taurus similar to TNF receptor-a... 40 6.2
34gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 6.2
35gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 6.2
36gb|AC132421.4| Mus musculus BAC clone RP23-294G5 from chromosome... 40 6.2
37ref|XM_843962.1| PREDICTED: Canis familiaris similar to TNF rece... 40 6.2
38ref|XM_810687.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 6.2
39emb|AJ011500.1|SVI011500 Streptomyces violaceoruber Tu22 granati... 40 6.2
40emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.2
41dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 6.2
42gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 6.2
43dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
44gb|AF218267.1|AF218267 Pseudomonas putida glycine betaine/L-prol... 40 6.2
45dbj|AP003876.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
46dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
47dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
48gb|AC153537.4| Mus musculus 10 BAC RP23-283A2 (Roswell Park Canc... 40 6.2
49dbj|AK065840.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
50gb|AF123462.1|DJ526N18 Homo sapiens BAC526N18 neurexin III gene,... 40 6.2
51gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 6.2
52gb|L37334.1|STMSVIDEOX Streptomyces violaceoruber Tu22 dTDP-gluc... 40 6.2 
>ref|XM_467477.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1755

 Score =  349 bits (176), Expect = 5e-93
 Identities = 233/252 (92%)
 Strand = Plus / Minus

                                                                        
Query: 206  ccttctcctcgttgctgtcgagcttgatgcccttgtaccacatcgcgcaggccacgtaca 265
            ||||||||||||||||||||||||||||||||||||||||||  ||||| || |||||||
Sbjct: 1729 ccttctcctcgttgctgtcgagcttgatgcccttgtaccacacggcgcacgcgacgtaca 1670

                                                                        
Query: 266  cggcgaggtcgacgagcgagagcgccgcgaggaggaagtagaacctgtcgaggtggccgg 325
            ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1669 cggcgaggtcgaccagcgagagcgcggcgaggaggaagtagaacctgtcgaggtggccgg 1610

                                                                        
Query: 326  agttgaggttacccgggatccacccaggcctcttgtccccggcggtcagggtggtcacca 385
            |||||||||| || ||||||||||| |||| | |||| |||||||| ||| |||| ||||
Sbjct: 1609 agttgaggttcccggggatccacccgggccgcctgtcgccggcggtgaggctggtgacca 1550

                                                                        
Query: 386  cgctgaccagcatgatgctcacgtagttcccgagcgagatggacgccatgcacaacgagc 445
            |||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 1549 cgctcaccagcatgatgctcacgtagttccccagcgagatggacgccatgcacagcgagc 1490

                        
Query: 446  tgccgaagctct 457
            | ||||||||||
Sbjct: 1489 tcccgaagctct 1478
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  349 bits (176), Expect = 5e-93
 Identities = 233/252 (92%)
 Strand = Plus / Plus

                                                                            
Query: 206      ccttctcctcgttgctgtcgagcttgatgcccttgtaccacatcgcgcaggccacgtaca 265
                ||||||||||||||||||||||||||||||||||||||||||  ||||| || |||||||
Sbjct: 29755033 ccttctcctcgttgctgtcgagcttgatgcccttgtaccacacggcgcacgcgacgtaca 29755092

                                                                            
Query: 266      cggcgaggtcgacgagcgagagcgccgcgaggaggaagtagaacctgtcgaggtggccgg 325
                ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 29755093 cggcgaggtcgaccagcgagagcgcggcgaggaggaagtagaacctgtcgaggtggccgg 29755152

                                                                            
Query: 326      agttgaggttacccgggatccacccaggcctcttgtccccggcggtcagggtggtcacca 385
                |||||||||| || ||||||||||| |||| | |||| |||||||| ||| |||| ||||
Sbjct: 29755153 agttgaggttcccggggatccacccgggccgcctgtcgccggcggtgaggctggtgacca 29755212

                                                                            
Query: 386      cgctgaccagcatgatgctcacgtagttcccgagcgagatggacgccatgcacaacgagc 445
                |||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 29755213 cgctcaccagcatgatgctcacgtagttccccagcgagatggacgccatgcacagcgagc 29755272

                            
Query: 446      tgccgaagctct 457
                | ||||||||||
Sbjct: 29755273 tcccgaagctct 29755284



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 292      gcgaggaggaagtagaacctgtcgaggtggcc 323
                ||||| |||||| ||||| |||||||||||||
Sbjct: 28331615 gcgagcaggaagaagaacttgtcgaggtggcc 28331646
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>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ2056_H01
          Length = 123428

 Score =  349 bits (176), Expect = 5e-93
 Identities = 233/252 (92%)
 Strand = Plus / Plus

                                                                         
Query: 206   ccttctcctcgttgctgtcgagcttgatgcccttgtaccacatcgcgcaggccacgtaca 265
             ||||||||||||||||||||||||||||||||||||||||||  ||||| || |||||||
Sbjct: 11378 ccttctcctcgttgctgtcgagcttgatgcccttgtaccacacggcgcacgcgacgtaca 11437

                                                                         
Query: 266   cggcgaggtcgacgagcgagagcgccgcgaggaggaagtagaacctgtcgaggtggccgg 325
             ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 11438 cggcgaggtcgaccagcgagagcgcggcgaggaggaagtagaacctgtcgaggtggccgg 11497

                                                                         
Query: 326   agttgaggttacccgggatccacccaggcctcttgtccccggcggtcagggtggtcacca 385
             |||||||||| || ||||||||||| |||| | |||| |||||||| ||| |||| ||||
Sbjct: 11498 agttgaggttcccggggatccacccgggccgcctgtcgccggcggtgaggctggtgacca 11557

                                                                         
Query: 386   cgctgaccagcatgatgctcacgtagttcccgagcgagatggacgccatgcacaacgagc 445
             |||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 11558 cgctcaccagcatgatgctcacgtagttccccagcgagatggacgccatgcacagcgagc 11617

                         
Query: 446   tgccgaagctct 457
             | ||||||||||
Sbjct: 11618 tcccgaagctct 11629
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>dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1191_G08
          Length = 172832

 Score =  349 bits (176), Expect = 5e-93
 Identities = 233/252 (92%)
 Strand = Plus / Plus

                                                                          
Query: 206    ccttctcctcgttgctgtcgagcttgatgcccttgtaccacatcgcgcaggccacgtaca 265
              ||||||||||||||||||||||||||||||||||||||||||  ||||| || |||||||
Sbjct: 124012 ccttctcctcgttgctgtcgagcttgatgcccttgtaccacacggcgcacgcgacgtaca 124071

                                                                          
Query: 266    cggcgaggtcgacgagcgagagcgccgcgaggaggaagtagaacctgtcgaggtggccgg 325
              ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 124072 cggcgaggtcgaccagcgagagcgcggcgaggaggaagtagaacctgtcgaggtggccgg 124131

                                                                          
Query: 326    agttgaggttacccgggatccacccaggcctcttgtccccggcggtcagggtggtcacca 385
              |||||||||| || ||||||||||| |||| | |||| |||||||| ||| |||| ||||
Sbjct: 124132 agttgaggttcccggggatccacccgggccgcctgtcgccggcggtgaggctggtgacca 124191

                                                                          
Query: 386    cgctgaccagcatgatgctcacgtagttcccgagcgagatggacgccatgcacaacgagc 445
              |||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 124192 cgctcaccagcatgatgctcacgtagttccccagcgagatggacgccatgcacagcgagc 124251

                          
Query: 446    tgccgaagctct 457
              | ||||||||||
Sbjct: 124252 tcccgaagctct 124263
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                        
Query: 407      cgtagttcccgagcgagatggacgccatgcacaacgagct 446
                |||||||||| |||||||||||||||||||||| ||||||
Sbjct: 12501643 cgtagttccccagcgagatggacgccatgcacagcgagct 12501604



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 197     gcacctttcccttctcctcgttgc 220
               ||||||| ||||||||||||||||
Sbjct: 9747542 gcaccttccccttctcctcgttgc 9747519
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>dbj|AP004750.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0421H01
          Length = 142638

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                     
Query: 407   cgtagttcccgagcgagatggacgccatgcacaacgagct 446
             |||||||||| |||||||||||||||||||||| ||||||
Sbjct: 75377 cgtagttccccagcgagatggacgccatgcacagcgagct 75338
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>ref|XM_754026.1| Ustilago maydis 521 hypothetical protein (UM02972.1) partial mRNA
          Length = 1743

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 260 cgtacacggcgaggtcgacgagc 282
           |||||||||||||||||||||||
Sbjct: 412 cgtacacggcgaggtcgacgagc 434
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>ref|NM_184319.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1984

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 312  gtcgaggtggccggagttgaggttacccgggatccaccc 350
            |||||||||||||  |||||||||  |||||||||||||
Sbjct: 1714 gtcgaggtggccgcggttgaggttgtccgggatccaccc 1676
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                      
Query: 312     gtcgaggtggccggagttgaggttacccgggatccaccc 350
               |||||||||||||  |||||||||  |||||||||||||
Sbjct: 2296838 gtcgaggtggccgcggttgaggttgtccgggatccaccc 2296800
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>dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0024G09
          Length = 175565

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 312   gtcgaggtggccggagttgaggttacccgggatccaccc 350
             |||||||||||||  |||||||||  |||||||||||||
Sbjct: 25888 gtcgaggtggccgcggttgaggttgtccgggatccaccc 25850
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>dbj|AP002483.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0019D06
          Length = 167405

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 312   gtcgaggtggccggagttgaggttacccgggatccaccc 350
             |||||||||||||  |||||||||  |||||||||||||
Sbjct: 80422 gtcgaggtggccgcggttgaggttgtccgggatccaccc 80384
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>dbj|AK105664.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-H07, full
            insert sequence
          Length = 2189

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 312  gtcgaggtggccggagttgaggttacccgggatccaccc 350
            |||||||||||||  |||||||||  |||||||||||||
Sbjct: 1815 gtcgaggtggccgcggttgaggttgtccgggatccaccc 1777
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>dbj|AK102216.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087L04, full
            insert sequence
          Length = 3090

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 312  gtcgaggtggccggagttgaggttacccgggatccaccc 350
            |||||||||||||  |||||||||  |||||||||||||
Sbjct: 2833 gtcgaggtggccgcggttgaggttgtccgggatccaccc 2795
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>dbj|AK070036.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036E09, full
            insert sequence
          Length = 2307

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 312  gtcgaggtggccggagttgaggttacccgggatccaccc 350
            |||||||||||||  |||||||||  |||||||||||||
Sbjct: 1816 gtcgaggtggccgcggttgaggttgtccgggatccaccc 1778
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>dbj|AK058745.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-H02, full
            insert sequence
          Length = 1984

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 312  gtcgaggtggccggagttgaggttacccgggatccaccc 350
            |||||||||||||  |||||||||  |||||||||||||
Sbjct: 1714 gtcgaggtggccgcggttgaggttgtccgggatccaccc 1676
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>gb|AY106418.1| Zea mays PCO154787 mRNA sequence
          Length = 2101

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 312  gtcgaggtggccggagttgaggttacccgggatccaccc 350
            |||||||||||||  |||||||||  |||||||||||||
Sbjct: 1824 gtcgaggtggccgcggttgaggttctccgggatccaccc 1786
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>gb|AF023472.1|AF023472 Hordeum vulgare peptide transporter (ptr1) mRNA, complete cds
          Length = 2260

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 312  gtcgaggtggccggagttgaggttacccgggatccaccc 350
            |||||||||||||  |||||||||  |||||||||||||
Sbjct: 1883 gtcgaggtggccgacgttgaggttgtccgggatccaccc 1845
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 210     ctcctcgttgctgtcgagcttg 231
               ||||||||||||||||||||||
Sbjct: 1953916 ctcctcgttgctgtcgagcttg 1953937
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>ref|XM_969871.1| PREDICTED: Tribolium castaneum similar to Lateral Signaling Target
           family member (lst-2) (LOC663837), mRNA
          Length = 2322

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 213 ctcgttgctgtcgagcttgatg 234
           ||||||||||||||||||||||
Sbjct: 732 ctcgttgctgtcgagcttgatg 711
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>emb|BX324216.9| Zebrafish DNA sequence from clone CH211-222K6 in linkage group 22,
            complete sequence
          Length = 84816

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 75   tgacacacttattctttttact 96
            ||||||||||||||||||||||
Sbjct: 8729 tgacacacttattctttttact 8750
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>gb|AC150866.2| Bos taurus  BAC CH240-290G4 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 170911

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 294    gaggaggaagtagaacctgtcgagg 318
              ||||||| |||||||||||||||||
Sbjct: 145572 gaggagggagtagaacctgtcgagg 145596
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>ref|XM_956565.1| Neurospora crassa OR74A hypothetical protein (NCU01046.1) partial
           mRNA
          Length = 1557

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 203 ttcccttctcctcgttgctgt 223
           |||||||||||||||||||||
Sbjct: 607 ttcccttctcctcgttgctgt 587
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>ref|XM_326538.1| Neurospora crassa OR74A hypothetical protein (NCU01046.1) partial
           mRNA
          Length = 1557

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 203 ttcccttctcctcgttgctgt 223
           |||||||||||||||||||||
Sbjct: 607 ttcccttctcctcgttgctgt 587
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>emb|AL670006.1|NCG15G9 Neurospora crassa DNA linkage group V cosmid contig G15G9
          Length = 92230

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 203   ttcccttctcctcgttgctgt 223
             |||||||||||||||||||||
Sbjct: 32294 ttcccttctcctcgttgctgt 32274
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 211     tcctcgttgctgtcgagcttg 231
               |||||||||||||||||||||
Sbjct: 4268189 tcctcgttgctgtcgagcttg 4268169
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 376    gtggtcaccacgctgaccagc 396
              |||||||||||||||||||||
Sbjct: 258337 gtggtcaccacgctgaccagc 258317
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 262     tacacggcgaggtcgacgagc 282
               |||||||||||||||||||||
Sbjct: 2537842 tacacggcgaggtcgacgagc 2537822
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>gb|AE005033.1| Halobacterium sp. NRC-1 section 64 of 170 of the complete genome
          Length = 12891

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 398  tgatgctcacgtagttcccga 418
            |||||||||||||||||||||
Sbjct: 3563 tgatgctcacgtagttcccga 3543
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>dbj|AB026655.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MXC7
          Length = 79284

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 148   cacttatatagatacctcaaa 168
             |||||||||||||||||||||
Sbjct: 42152 cacttatatagatacctcaaa 42132
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>ref|XM_480011.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1086

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 266 cggcgaggtcgacgagcgagagcgccgc 293
           |||||||||||||||||| | |||||||
Sbjct: 781 cggcgaggtcgacgagcgcgggcgccgc 754
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>ref|XM_467231.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2240

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 292  gcgaggaggaagtagaacctgtcgaggtggcc 323
            ||||| |||||| ||||| |||||||||||||
Sbjct: 1814 gcgagcaggaagaagaacttgtcgaggtggcc 1783
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>ref|XM_592827.2| PREDICTED: Bos taurus similar to TNF receptor-associated factor 3
            interacting protein 1 (predicted) (LOC514909), mRNA
          Length = 2305

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 425  tggacgccatgcacaacgagctgc 448
            ||||||||||||| ||||||||||
Sbjct: 1166 tggacgccatgcagaacgagctgc 1189
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>ref|XM_581195.2| PREDICTED: Bos taurus similar to TNF receptor-associated factor 3
            interacting protein 1 (LOC504984), partial mRNA
          Length = 1895

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 425  tggacgccatgcacaacgagctgc 448
            ||||||||||||| ||||||||||
Sbjct: 1817 tggacgccatgcagaacgagctgc 1840
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 278    cgagcgagagcgccgcgagg 297
              ||||||||||||||||||||
Sbjct: 377499 cgagcgagagcgccgcgagg 377518
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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 193     accggcacctttcccttctcctcg 216
               |||||| |||||||||||||||||
Sbjct: 4277047 accggcccctttcccttctcctcg 4277070
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>gb|AC132421.4| Mus musculus BAC clone RP23-294G5 from chromosome 18, complete sequence
          Length = 229447

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 25     aattgaaactaggacagaaagcaa 48
              ||||||||||||||||| ||||||
Sbjct: 154316 aattgaaactaggacagcaagcaa 154293
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>ref|XM_843962.1| PREDICTED: Canis familiaris similar to TNF receptor-associated factor
            3 interacting protein 1 (LOC607339), mRNA
          Length = 1896

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 425  tggacgccatgcacaacgagctgc 448
            ||||||||||||| ||||||||||
Sbjct: 1652 tggacgccatgcagaacgagctgc 1675
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>ref|XM_810687.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053507615.90) partial mRNA
          Length = 6372

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 202  tttcccttctcctcgttgctgtcg 225
            |||||||||||| |||||||||||
Sbjct: 3092 tttcccttctccacgttgctgtcg 3069
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>emb|AJ011500.1|SVI011500 Streptomyces violaceoruber Tu22 granaticin biosynthetic gene cluster
          Length = 39250

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   cgtacacggcgaggtcgacg 279
             ||||||||||||||||||||
Sbjct: 13634 cgtacacggcgaggtcgacg 13653
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 278     cgagcgagagcgccgcgagg 297
               ||||||||||||||||||||
Sbjct: 1696682 cgagcgagagcgccgcgagg 1696701
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 221     tgtcgagcttgatgcccttg 240
               ||||||||||||||||||||
Sbjct: 3663089 tgtcgagcttgatgcccttg 3663070
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 278     cgagcgagagcgccgcgagg 297
               ||||||||||||||||||||
Sbjct: 1147029 cgagcgagagcgccgcgagg 1147048
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 266     cggcgaggtcgacgagcgagagcgccgc 293
               |||||||||||||||||| | |||||||
Sbjct: 2189787 cggcgaggtcgacgagcgcgggcgccgc 2189814
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>gb|AF218267.1|AF218267 Pseudomonas putida glycine betaine/L-proline transport system permease
             protein (proW) gene, partial cds; glycine
             betaine/L-proline-binding periplasmic protein (proX),
             ArgR-like transcriptional regulator (argR) genes, complete
             cds; benzoate utilization gene cluster, complete sequence;
             and YhfP-like protein (yhfP) gene, partial cds
          Length = 13462

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   tgctgtcgagcttgatgccc 237
             ||||||||||||||||||||
Sbjct: 11526 tgctgtcgagcttgatgccc 11507
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>dbj|AP003876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1119_D01
          Length = 97862

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 266   cggcgaggtcgacgagcgagagcgccgc 293
             |||||||||||||||||| | |||||||
Sbjct: 68049 cggcgaggtcgacgagcgcgggcgccgc 68076
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>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0456E06
          Length = 164353

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 197   gcacctttcccttctcctcgttgc 220
             ||||||| ||||||||||||||||
Sbjct: 37784 gcaccttccccttctcctcgttgc 37761
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>dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1743_B12
          Length = 175645

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 292    gcgaggaggaagtagaacctgtcgaggtggcc 323
              ||||| |||||| ||||| |||||||||||||
Sbjct: 123372 gcgagcaggaagaagaacttgtcgaggtggcc 123403
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>gb|AC153537.4| Mus musculus 10 BAC RP23-283A2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 221267

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     tgaaagtactctttgtcttc 23
             ||||||||||||||||||||
Sbjct: 79690 tgaaagtactctttgtcttc 79671
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>dbj|AK065840.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036C22, full
            insert sequence
          Length = 2240

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 292  gcgaggaggaagtagaacctgtcgaggtggcc 323
            ||||| |||||| ||||| |||||||||||||
Sbjct: 1814 gcgagcaggaagaagaacttgtcgaggtggcc 1783
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>gb|AF123462.1|DJ526N18 Homo sapiens BAC526N18 neurexin III gene, partial cds
          Length = 180104

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     gcagcaaacacaggatgaca 79
              ||||||||||||||||||||
Sbjct: 134861 gcagcaaacacaggatgaca 134842
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 275    cgacgagcgagagcgccgcg 294
              ||||||||||||||||||||
Sbjct: 179054 cgacgagcgagagcgccgcg 179073
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>gb|L37334.1|STMSVIDEOX Streptomyces violaceoruber Tu22 dTDP-glucose dehydrtatase (graE)
            gene, complete cds, dTDP-glucose synthetase (graD) gene,
            complete cds, ORF4 (Streptomyces coelicolor mmr homolog),
            complete cds
          Length = 7365

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 260  cgtacacggcgaggtcgacg 279
            ||||||||||||||||||||
Sbjct: 2190 cgtacacggcgaggtcgacg 2171


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,186,272
Number of Sequences: 3902068
Number of extensions: 3186272
Number of successful extensions: 58642
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57960
Number of HSP's gapped (non-prelim): 682
length of query: 457
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 435
effective length of database: 17,147,199,772
effective search space: 7459031900820
effective search space used: 7459031900820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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