ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast18g07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009509.1| Triticum aestivum clone wr1.pk0091.g6:fis, full i... 375 e-101
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 70 4e-09
3dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic D... 70 4e-09
4dbj|AK119521.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 4e-09
5ref|NM_185694.1| Oryza sativa (japonica cultivar-group), Ozsa804... 66 6e-08
6ref|NM_185684.1| Oryza sativa (japonica cultivar-group), Ozsa803... 66 6e-08
7gb|AF082890.1|AF082890 Solanum tuberosum cystathionine beta-lyas... 48 0.015
8gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 44 0.24
9gb|AF259812.1|AF259812 Aedes aegypti Pony-Aa-B15 MITE repeat region 44 0.24
10gb|AF208680.1|AF208680 Aedes aegypti clone p510, Pony-Aa-B8 MITE... 44 0.24
11emb|AL935184.16| Zebrafish DNA sequence from clone DKEY-30K22 in... 42 0.93
12emb|BX255954.13| Zebrafish DNA sequence from clone CH211-275D2 i... 42 0.93
13ref|XM_951888.1| Neurospora crassa OR74A hypothetical protein (N... 40 3.7
14ref|XM_327970.1| Neurospora crassa OR74A hypothetical protein (N... 40 3.7
15gb|AY814814.1| Schistosoma japonicum SJCHGC04922 protein mRNA, c... 40 3.7
16gb|AC123854.3| Mus musculus BAC clone RP23-328J8 from chromosome... 40 3.7
17gb|AC122872.3| Mus musculus BAC clone RP23-110E8 from 1, complet... 40 3.7
18emb|AL670003.1|NCB9G16 Neurospora crassa DNA linkage group II BA... 40 3.7
19emb|AL670002.1|NCB24G3 Neurospora crassa DNA linkage group II BA... 40 3.7
20gb|AC139698.6| Homo sapiens 3 BAC RP11-766K19 (Roswell Park Canc... 40 3.7 
>gb|BT009509.1| Triticum aestivum clone wr1.pk0091.g6:fis, full insert mRNA sequence
          Length = 1699

 Score =  375 bits (189), Expect = e-101
 Identities = 258/281 (91%)
 Strand = Plus / Minus

                                                                        
Query: 3    aaatactcatgcagaagtttattattactgtagcagtttaacaaatgaatcaccaattca 62
            |||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| ||
Sbjct: 1268 aaatactcgtgcagaagtttattattactgttgcagcttaacaaatgaatcaccaatgca 1209

                                                                        
Query: 63   aatcgcatctacaacttgatgaaccggaaccctgagcgccaaagtgcagattttgtatgc 122
             ||| ||||||||||||||| |||  ||||||  ||||||| ||| ||||||||||||| 
Sbjct: 1208 tatcacatctacaacttgattaactagaacccgaagcgccatagtccagattttgtatga 1149

                                                                        
Query: 123  tctatgctgggccggacctgagcgcgtaatcaagatcagctatgaggtcgtccacgtcct 182
            |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 1148 tctatgctggaccggacctgagcgcgtaatcaagatcagctatgaggtcatccacatcct 1089

                                                                        
Query: 183  caatgcccacggatatccgcactagatcatcagtcaacccacgctcctttcgtaccaagg 242
            |||| ||||| |||||||| |||||||||||||||||||||||||||| ||| ||| |||
Sbjct: 1088 caatacccaccgatatccgtactagatcatcagtcaacccacgctcctctcgcaccgagg 1029

                                                     
Query: 243  aagggatgctcgcgtgcgacatgaagcagggcaagcttatg 283
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 aagggatgctcgcgtgcgacatgaagcagggcaagcttatg 988
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 125/155 (80%)
 Strand = Plus / Minus

                                                                           
Query: 121     gctctatgctgggccggacctgagcgcgtaatcaagatcagctatgaggtcgtccacgtc 180
               |||||| ||||| || |||| ||| || | ||||||||| ||||||||||||||  | ||
Sbjct: 3864174 gctctaagctggaccagaccggagagcatgatcaagatccgctatgaggtcgtcggcatc 3864115

                                                                           
Query: 181     ctcaatgcccacggatatccgcactagatcatcagtcaacccacgctcctttcgtaccaa 240
               |||||| || || |||||||  |||||||| || ||||  || |||||||  || |||  
Sbjct: 3864114 ctcaattccaaccgatatcctgactagatcgtctgtcaggccgcgctcctcgcgaaccgc 3864055

                                                  
Query: 241     ggaagggatgctcgcgtgcgacatgaagcagggca 275
                ||||||||||| ||||| ||||||||||| ||||
Sbjct: 3864054 agaagggatgctggcgtgtgacatgaagcatggca 3864020



 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 125/155 (80%)
 Strand = Plus / Minus

                                                                           
Query: 121     gctctatgctgggccggacctgagcgcgtaatcaagatcagctatgaggtcgtccacgtc 180
               |||||| ||||| || |||| ||| || | ||||||||| ||||||||||||||  | ||
Sbjct: 3826118 gctctaagctggaccagaccggagagcatgatcaagatccgctatgaggtcgtcggcatc 3826059

                                                                           
Query: 181     ctcaatgcccacggatatccgcactagatcatcagtcaacccacgctcctttcgtaccaa 240
               |||||| || || |||||||  |||||||| || ||||  || |||||||  || |||  
Sbjct: 3826058 ctcaattccaaccgatatcctgactagatcgtctgtcaggccgcgctcctcgcgaaccgc 3825999

                                                  
Query: 241     ggaagggatgctcgcgtgcgacatgaagcagggca 275
                ||||||||||| ||||| ||||||||||| ||||
Sbjct: 3825998 agaagggatgctggcgtgtgacatgaagcatggca 3825964
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>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0015E04
          Length = 152046

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 125/155 (80%)
 Strand = Plus / Minus

                                                                          
Query: 121    gctctatgctgggccggacctgagcgcgtaatcaagatcagctatgaggtcgtccacgtc 180
              |||||| ||||| || |||| ||| || | ||||||||| ||||||||||||||  | ||
Sbjct: 122128 gctctaagctggaccagaccggagagcatgatcaagatccgctatgaggtcgtcggcatc 122069

                                                                          
Query: 181    ctcaatgcccacggatatccgcactagatcatcagtcaacccacgctcctttcgtaccaa 240
              |||||| || || |||||||  |||||||| || ||||  || |||||||  || |||  
Sbjct: 122068 ctcaattccaaccgatatcctgactagatcgtctgtcaggccgcgctcctcgcgaaccgc 122009

                                                 
Query: 241    ggaagggatgctcgcgtgcgacatgaagcagggca 275
               ||||||||||| ||||| ||||||||||| ||||
Sbjct: 122008 agaagggatgctggcgtgtgacatgaagcatggca 121974



 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 125/155 (80%)
 Strand = Plus / Minus

                                                                         
Query: 121   gctctatgctgggccggacctgagcgcgtaatcaagatcagctatgaggtcgtccacgtc 180
             |||||| ||||| || |||| ||| || | ||||||||| ||||||||||||||  | ||
Sbjct: 84072 gctctaagctggaccagaccggagagcatgatcaagatccgctatgaggtcgtcggcatc 84013

                                                                         
Query: 181   ctcaatgcccacggatatccgcactagatcatcagtcaacccacgctcctttcgtaccaa 240
             |||||| || || |||||||  |||||||| || ||||  || |||||||  || |||  
Sbjct: 84012 ctcaattccaaccgatatcctgactagatcgtctgtcaggccgcgctcctcgcgaaccgc 83953

                                                
Query: 241   ggaagggatgctcgcgtgcgacatgaagcagggca 275
              ||||||||||| ||||| ||||||||||| ||||
Sbjct: 83952 agaagggatgctggcgtgtgacatgaagcatggca 83918
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>dbj|AK119521.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D09, full
            insert sequence
          Length = 1679

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 125/155 (80%)
 Strand = Plus / Minus

                                                                        
Query: 121  gctctatgctgggccggacctgagcgcgtaatcaagatcagctatgaggtcgtccacgtc 180
            |||||| ||||| || |||| ||| || | ||||||||| ||||||||||||||  | ||
Sbjct: 1469 gctctaagctggaccagaccggagagcatgatcaagatccgctatgaggtcgtcggcatc 1410

                                                                        
Query: 181  ctcaatgcccacggatatccgcactagatcatcagtcaacccacgctcctttcgtaccaa 240
            |||||| || || |||||||  |||||||| || ||||  || |||||||  || |||  
Sbjct: 1409 ctcaattccaaccgatatcctgactagatcgtctgtcaggccgcgctcctcgcgaaccgc 1350

                                               
Query: 241  ggaagggatgctcgcgtgcgacatgaagcagggca 275
             ||||||||||| ||||| ||||||||||| ||||
Sbjct: 1349 agaagggatgctggcgtgtgacatgaagcatggca 1315
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>ref|NM_185694.1| Oryza sativa (japonica cultivar-group), Ozsa8045 predicted mRNA
          Length = 1152

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 102/125 (81%)
 Strand = Plus / Minus

                                                                        
Query: 151  atcaagatcagctatgaggtcgtccacgtcctcaatgcccacggatatccgcactagatc 210
            ||||||||| ||||||||||||||  | |||||||| || || |||||||  ||||||||
Sbjct: 1125 atcaagatccgctatgaggtcgtcggcatcctcaattccaaccgatatcctgactagatc 1066

                                                                        
Query: 211  atcagtcaacccacgctcctttcgtaccaaggaagggatgctcgcgtgcgacatgaagca 270
             || ||||  || |||||||  || |||   ||||||||||| ||||| |||||||||||
Sbjct: 1065 gtctgtcaggccgcgctcctcgcgaaccgcagaagggatgctggcgtgtgacatgaagca 1006

                 
Query: 271  gggca 275
             ||||
Sbjct: 1005 tggca 1001
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>ref|NM_185684.1| Oryza sativa (japonica cultivar-group), Ozsa8035 predicted mRNA
          Length = 1428

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 102/125 (81%)
 Strand = Plus / Minus

                                                                        
Query: 151  atcaagatcagctatgaggtcgtccacgtcctcaatgcccacggatatccgcactagatc 210
            ||||||||| ||||||||||||||  | |||||||| || || |||||||  ||||||||
Sbjct: 1401 atcaagatccgctatgaggtcgtcggcatcctcaattccaaccgatatcctgactagatc 1342

                                                                        
Query: 211  atcagtcaacccacgctcctttcgtaccaaggaagggatgctcgcgtgcgacatgaagca 270
             || ||||  || |||||||  || |||   ||||||||||| ||||| |||||||||||
Sbjct: 1341 gtctgtcaggccgcgctcctcgcgaaccgcagaagggatgctggcgtgtgacatgaagca 1282

                 
Query: 271  gggca 275
             ||||
Sbjct: 1281 tggca 1277
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>gb|AF082890.1|AF082890 Solanum tuberosum cystathionine beta-lyase (CbL) mRNA, complete cds;
            chloroplast gene for chloroplast product
          Length = 1626

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 248  atgctcgcgtgcgacatgaagcagggcaagcttatg 283
            |||||||| || ||||||||||| ||||||||||||
Sbjct: 1298 atgctcgcatgggacatgaagcaaggcaagcttatg 1263
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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 164     atgaggtcgtccacgtcctcaatgcc 189
               |||||||| |||||||||||||||||
Sbjct: 2955494 atgaggtcttccacgtcctcaatgcc 2955519
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>gb|AF259812.1|AF259812 Aedes aegypti Pony-Aa-B15 MITE repeat region
          Length = 511

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 112 attttgtatgctctatgctggg 133
           ||||||||||||||||||||||
Sbjct: 71  attttgtatgctctatgctggg 50
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>gb|AF208680.1|AF208680 Aedes aegypti clone p510, Pony-Aa-B8 MITE repeat region
          Length = 2142

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 112 attttgtatgctctatgctggg 133
           ||||||||||||||||||||||
Sbjct: 205 attttgtatgctctatgctggg 226
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>emb|AL935184.16| Zebrafish DNA sequence from clone DKEY-30K22 in linkage group 1,
             complete sequence
          Length = 255909

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 21    ttattattactgtagcagttt 41
             |||||||||||||||||||||
Sbjct: 62475 ttattattactgtagcagttt 62455
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>emb|BX255954.13| Zebrafish DNA sequence from clone CH211-275D2 in linkage group 20,
              complete sequence
          Length = 164972

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 21     ttattattactgtagcagttt 41
              |||||||||||||||||||||
Sbjct: 109518 ttattattactgtagcagttt 109498
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>ref|XM_951888.1| Neurospora crassa OR74A hypothetical protein (NCU01532.1) partial
           mRNA
          Length = 837

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 gaggtcgtccacgtcctcaa 185
           ||||||||||||||||||||
Sbjct: 801 gaggtcgtccacgtcctcaa 782
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>ref|XM_327970.1| Neurospora crassa OR74A hypothetical protein (NCU01532.1) partial
           mRNA
          Length = 837

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 gaggtcgtccacgtcctcaa 185
           ||||||||||||||||||||
Sbjct: 801 gaggtcgtccacgtcctcaa 782
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>gb|AY814814.1| Schistosoma japonicum SJCHGC04922 protein mRNA, complete cds
          Length = 1381

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 31  tgtagcagtttaacaaatga 50
           ||||||||||||||||||||
Sbjct: 111 tgtagcagtttaacaaatga 92
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>gb|AC123854.3| Mus musculus BAC clone RP23-328J8 from chromosome 1, complete sequence
          Length = 187979

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 17    aagtttattattactgtagcagtt 40
             |||||||||||||||||| |||||
Sbjct: 81875 aagtttattattactgtaacagtt 81898
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>gb|AC122872.3| Mus musculus BAC clone RP23-110E8 from 1, complete sequence
          Length = 190644

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 17     aagtttattattactgtagcagtt 40
              |||||||||||||||||| |||||
Sbjct: 162284 aagtttattattactgtaacagtt 162307
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>emb|AL670003.1|NCB9G16 Neurospora crassa DNA linkage group II BAC clone B9G16
          Length = 69187

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   gaggtcgtccacgtcctcaa 185
             ||||||||||||||||||||
Sbjct: 58136 gaggtcgtccacgtcctcaa 58155
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>emb|AL670002.1|NCB24G3 Neurospora crassa DNA linkage group II BAC clone B24G3
          Length = 77166

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 166  gaggtcgtccacgtcctcaa 185
            ||||||||||||||||||||
Sbjct: 7550 gaggtcgtccacgtcctcaa 7569
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>gb|AC139698.6| Homo sapiens 3 BAC RP11-766K19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 35402

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    ttattattactgtagcagtt 40
             ||||||||||||||||||||
Sbjct: 18374 ttattattactgtagcagtt 18393


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,000,720
Number of Sequences: 3902068
Number of extensions: 2000720
Number of successful extensions: 34647
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34592
Number of HSP's gapped (non-prelim): 48
length of query: 283
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 261
effective length of database: 17,147,199,772
effective search space: 4475419140492
effective search space used: 4475419140492
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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