ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast18c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RNC_STRMU (Q8DT66) Ribonuclease III (EC 3.1.26.3) (RNase III) 32 0.56
2HIS3_CHLTE (Q8KF68) Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.... 29 3.6
3BIR1G_MOUSE (Q9JIB3) Baculoviral IAP repeat-containing protein 1... 28 6.1
4BIR1F_MOUSE (Q9JIB6) Baculoviral IAP repeat-containing protein 1... 28 6.1
5GPRS_DROME (O61366) Serine-enriched protein 28 6.1

>RNC_STRMU (Q8DT66) Ribonuclease III (EC 3.1.26.3) (RNase III)|
          Length = 231

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = -2

Query: 178 LRALLMRKPLLEGFSRNFHVSRFLKL 101
           +R++++R+  L GFSRN H  R++KL
Sbjct: 77  MRSMIVREESLAGFSRNCHFDRYIKL 102



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>HIS3_CHLTE (Q8KF68) Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (PRA-CH)|
          Length = 137

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +3

Query: 33  TWRHHEAWLWHRSLTKLWLASQQSFRNRET*KFLENPSNKGLRIKRARRGFGRHLIPCSC 212
           T    +A  W RS  KLWL  + S   +E    L +     L +K +++G   H+   SC
Sbjct: 49  TLEKKKACYWSRSRNKLWLKGESSGNMQEVHDILIDCDGDTLLLKVSQKGGACHVGYHSC 108



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>BIR1G_MOUSE (Q9JIB3) Baculoviral IAP repeat-containing protein 1g (Neuronal|
           apoptosis inhibitory protein 7)
          Length = 1402

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 6   KGVHNNSGYTWRHHEAWLWHRSLTKLWLASQQSF 107
           + +  N  Y   H + +LW + +  LWL S +SF
Sbjct: 823 ENMSENEDYMKLHPQTFLWFQFVRGLWLVSPESF 856



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>BIR1F_MOUSE (Q9JIB6) Baculoviral IAP repeat-containing protein 1f (Neuronal|
           apoptosis inhibitory protein 6)
          Length = 1403

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 6   KGVHNNSGYTWRHHEAWLWHRSLTKLWLASQQSF 107
           + +  N  Y   H + +LW + +  LWL S +SF
Sbjct: 823 ENMSENEDYMKLHPQTFLWFQFVRGLWLVSPESF 856



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>GPRS_DROME (O61366) Serine-enriched protein|
          Length = 1302

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 39  RHHEAWLWHRSLTKLWLASQQSFRNRET*KFLENPSN 149
           +HH     H+SL K+  A  QSFR R +     +P+N
Sbjct: 338 QHHRHRHHHQSLPKIRKAKSQSFRTRRSPSERRSPNN 374


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,574,828
Number of Sequences: 219361
Number of extensions: 499185
Number of successful extensions: 1403
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 80,573,946
effective HSP length: 64
effective length of database: 66,534,842
effective search space used: 1596836208
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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