ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast18b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TESK1_HUMAN (Q15569) Dual specificity testis-specific protein ki... 30 1.3
2ILVD1_BURS3 (Q394V3) Dihydroxy-acid dehydratase 1 (EC 4.2.1.9) (... 29 2.9
3ATT_APLFA (Q7M459) Attractin 29 3.8
4ATT_APLCA (O96910) Attractin precursor 28 4.9
5TESK1_RAT (Q63572) Dual specificity testis-specific protein kina... 28 6.4
6NDK_HELAN (Q96559) Nucleoside diphosphate kinase (EC 2.7.4.6) (N... 28 6.4
7CORIN_HUMAN (Q9Y5Q5) Atrial natriuteric peptide-converting enzym... 28 8.4
8NIPBL_HUMAN (Q6KC79) Nipped-B-like protein (Delangin) (SCC2 homo... 28 8.4
9FOXQ1_MOUSE (O70220) Forkhead box protein Q1 (Hepatocyte nuclear... 28 8.4
10NPBL_MOUSE (Q6KCD5) Nipped-B-like protein (Delangin homolog) (SC... 28 8.4

>TESK1_HUMAN (Q15569) Dual specificity testis-specific protein kinase 1 (EC|
           2.7.12.1) (Testicular protein kinase 1)
          Length = 626

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 134 PLVRTSSESTVSCSGKAPEGAIPGPSP 214
           P V  S+E  + C G +PE   PGP+P
Sbjct: 458 PAVGPSAEEKMECEGSSPEPEPPGPAP 484



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>ILVD1_BURS3 (Q394V3) Dihydroxy-acid dehydratase 1 (EC 4.2.1.9) (DAD 1)|
          Length = 619

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -3

Query: 179 SPSMKQSTQNWSGQGESDCLIKTKHCDGPRGC*RNVIFAQCSECQSEEIQPSAGKRREY 3
           +PS+K +   W      D  ++T +  GP G    V F+Q +   S ++  + G  R Y
Sbjct: 359 TPSLKDALDQWDIVRTQDDAVRTFYQAGPAGVPTQVAFSQNTRWPSLDLDRAEGCIRSY 417



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>ATT_APLFA (Q7M459) Attractin|
          Length = 58

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 143 GQGESDCLIKTKHCDGPRGC*RNVIFAQC-----SECQSEEIQPSAG 18
           G   S C ++ ++CD   GC  N I  +C       CQ++E + ++G
Sbjct: 7   GNITSQCEMQHQNCDDANGC--NTIIEECKTSMVERCQNQEFESASG 51



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>ATT_APLCA (O96910) Attractin precursor|
          Length = 76

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 143 GQGESDCLIKTKHCDGPRGC*RNVIFAQC-----SECQSEEIQPSAG 18
           G   S C ++ K+C+   GC  + I  +C       CQ++E + +AG
Sbjct: 25  GNITSQCQMQHKNCEDANGC--DTIIEECKTSMVERCQNQEFESAAG 69



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>TESK1_RAT (Q63572) Dual specificity testis-specific protein kinase 1 (EC|
           2.7.12.1) (Testicular protein kinase 1)
          Length = 628

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 140 VRTSSESTVSCSGKAPEGAIPGPSP 214
           V  S+E  + C G +PE   PGP+P
Sbjct: 462 VGPSTEERMDCEGSSPEPEPPGPAP 486



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>NDK_HELAN (Q96559) Nucleoside diphosphate kinase (EC 2.7.4.6) (NDK) (NDP|
           kinase)
          Length = 148

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = +3

Query: 15  FTRAWLNFFTLTFRALGKNHIASASARTIAMLCFN*TVGFPLSGPVLSRLFHARGKLPKG 194
           FT   L   T+  +A  + H A  SA+      FN  V + +SGPV++ ++  +  +  G
Sbjct: 30  FTLKGLKLLTVD-QAFAEKHYADLSAKPF----FNGLVEYIISGPVVAMVWEGKNVVTTG 84

Query: 195 R------FPVRPPAGT 224
           R       P   P GT
Sbjct: 85  RKIIGATNPAESPPGT 100



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>CORIN_HUMAN (Q9Y5Q5) Atrial natriuteric peptide-converting enzyme (EC 3.4.21.-)|
           (pro-ANP-converting enzyme) (Corin) (Heart-specific
           serine proteinase ATC2) (Transmembrane protease, serine
           10)
          Length = 1042

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -3

Query: 149 WSGQGESDCLIKTKHCDGPRGC*RNVIFAQCSECQSEEIQ 30
           W       CL  T  CDG   C   +    CS CQ +E++
Sbjct: 622 WECPSNKQCLKHTVICDGFPDCPDYMDEKNCSFCQDDELE 661



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>NIPBL_HUMAN (Q6KC79) Nipped-B-like protein (Delangin) (SCC2 homolog)|
          Length = 2804

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 21/56 (37%), Positives = 29/56 (51%)
 Frame = +3

Query: 12   PFTRAWLNFFTLTFRALGKNHIASASARTIAMLCFN*TVGFPLSGPVLSRLFHARG 179
            PF +++  + T   R LG+N IA    RT AM C +  V    S  +L+RL   RG
Sbjct: 1765 PFAQSFDIYLTQILRVLGENAIA---VRTKAMKCLSEVVAVDPS--ILARLDMQRG 1815



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>FOXQ1_MOUSE (O70220) Forkhead box protein Q1 (Hepatocyte nuclear factor 3|
           forkhead homolog 1) (HNF-3/forkhead-like protein 1)
           (HFH-1) (HFH-1l)
          Length = 400

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 143 RTSSESTVSCSGKAPEGAIPGPS 211
           R S  +TVS SG  PE A PGP+
Sbjct: 211 RLSHRTTVSASGLRPEEAPPGPA 233



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>NPBL_MOUSE (Q6KCD5) Nipped-B-like protein (Delangin homolog) (SCC2 homolog)|
          Length = 2798

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 21/56 (37%), Positives = 29/56 (51%)
 Frame = +3

Query: 12   PFTRAWLNFFTLTFRALGKNHIASASARTIAMLCFN*TVGFPLSGPVLSRLFHARG 179
            PF +++  + T   R LG+N IA    RT AM C +  V    S  +L+RL   RG
Sbjct: 1759 PFAQSFDIYLTQILRVLGENAIA---VRTKAMKCLSEVVAVDPS--ILARLDMQRG 1809


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,769,462
Number of Sequences: 219361
Number of extensions: 700011
Number of successful extensions: 1962
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1962
length of database: 80,573,946
effective HSP length: 50
effective length of database: 69,605,896
effective search space used: 1670541504
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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