ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast18b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GOX1_ARATH (Q9LRS0) Probable peroxisomal (S)-2-hydroxy-acid oxid... 44 8e-05
2GOX_SPIOL (P05414) Peroxisomal (S)-2-hydroxy-acid oxidase (EC 1.... 43 2e-04
3GOX2_ARATH (Q9LRR9) Probable peroxisomal (S)-2-hydroxy-acid oxid... 42 3e-04
4GATD_ARCFU (O29380) Glutamyl-tRNA(Gln) amidotransferase subunit ... 28 6.1
5WECF_PHOLL (Q7MYM4) 4-alpha-L-fucosyltransferase (EC 2.4.1.-) (T... 28 8.0

>GOX1_ARATH (Q9LRS0) Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 (EC|
           1.1.3.15) (Glycolate oxidase 1) (GOX 1) (Short chain
           alpha-hydroxy acid oxidase 1)
          Length = 367

 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = -2

Query: 273 RDELELAMALSGCASLRDITRAHVVTDGD 187
           RDE EL MALSGC SL +ITR H+VT+ D
Sbjct: 331 RDEFELTMALSGCRSLSEITRNHIVTEWD 359



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>GOX_SPIOL (P05414) Peroxisomal (S)-2-hydroxy-acid oxidase (EC 1.1.3.15)|
           (Glycolate oxidase) (GOX) (Short chain alpha-hydroxy
           acid oxidase)
          Length = 369

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 18/29 (62%), Positives = 23/29 (79%)
 Frame = -2

Query: 273 RDELELAMALSGCASLRDITRAHVVTDGD 187
           RDE EL MALSGC SL++I+R+H+  D D
Sbjct: 331 RDEFELTMALSGCRSLKEISRSHIAADWD 359



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>GOX2_ARATH (Q9LRR9) Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 (EC|
           1.1.3.15) (Glycolate oxidase 2) (GOX 2) (Short chain
           alpha-hydroxy acid oxidase 2)
          Length = 367

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 18/29 (62%), Positives = 23/29 (79%)
 Frame = -2

Query: 273 RDELELAMALSGCASLRDITRAHVVTDGD 187
           RDE EL MALSGC SL++I+R H+ T+ D
Sbjct: 331 RDEFELTMALSGCRSLKEISRNHITTEWD 359



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>GATD_ARCFU (O29380) Glutamyl-tRNA(Gln) amidotransferase subunit D (EC 6.3.5.-)|
           (Glu-ADT subunit D)
          Length = 418

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 2   CMHPSPIFISTSTNYCQIHRSIKLEE---QERAAFQ 100
           CMH S     TS +YC +HR +K+ +     R AFQ
Sbjct: 223 CMHGS-----TSDDYCLVHRGVKVRKNHTSRRDAFQ 253



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>WECF_PHOLL (Q7MYM4) 4-alpha-L-fucosyltransferase (EC 2.4.1.-)|
           (TDP-Fuc4NAc:lipid II Fuc4NAc transferase) (Fuc4NAc
           transferase)
          Length = 361

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -1

Query: 151 EAPHTASSTICARALVDLKCRSFLFLQFDRSMYLAII--RTRRNKDW 17
           ++  + +  + A+A  D  CR F   QF+ S++LA++  + +R++ W
Sbjct: 61  DSKKSLAQAVIAQACSDRDCRFFFHGQFNVSLWLALLSGKIKRHQFW 107


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,712,178
Number of Sequences: 219361
Number of extensions: 277565
Number of successful extensions: 881
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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