ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast18a12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190249.1| Oryza sativa (japonica cultivar-group), predic... 72 1e-09
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
3dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
4gb|AF429948.1| Oryza sativa putative fructokinase I mRNA, comple... 72 1e-09
5dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
6dbj|AK120887.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
7dbj|AK060500.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
8gb|AY104222.1| Zea mays PCO070293 mRNA sequence 50 0.004
9ref|NM_127294.3| Arabidopsis thaliana protein binding / transcri... 44 0.24
10gb|AC004895.2| Homo sapiens PAC clone RP4-810E6 from 7, complete... 44 0.24
11gb|AY142547.1| Arabidopsis thaliana clone RAFL08-16-B13 (R11303)... 44 0.24
12gb|AC002329.2|AC002329 Arabidopsis thaliana chromosome II sectio... 44 0.24
13gb|AC116501.7| Mus musculus chromosome 5, clone RP24-300D7, comp... 42 0.95
14gb|AC125024.6| Mus musculus chromosome 5, clone RP24-320B23, com... 42 0.95
15gb|AC112030.4| Rattus norvegicus 4 BAC CH230-100K8 (Children's H... 42 0.95
16emb|AL353802.14| Human DNA sequence from clone RP4-662P1 on chro... 42 0.95
17gb|AC055120.5| Homo sapiens BAC clone RP11-336N6 from 4, complet... 42 0.95
18gb|AC118025.18| Mus musculus chromosome 6, clone RP23-461L9, com... 40 3.8
19gb|AC113599.10| Mus musculus chromosome 18, clone RP23-5D23, com... 40 3.8
20emb|BX927068.14| Zebrafish DNA sequence from clone CH211-152F2 i... 40 3.8
21gb|AC113010.10| Mus musculus chromosome 18, clone RP23-172F6, co... 40 3.8
22gb|AC095563.7| Rattus norvegicus 9 BAC CH230-7G11 (Children's Ho... 40 3.8
23emb|AL732372.15| Human DNA sequence from clone RP4-669L17 on chr... 40 3.8
24emb|AL627309.15| Human DNA sequence from clone RP11-34P13 on chr... 40 3.8
25emb|AL672310.3| Human DNA sequence from clone RP11-226I21 on chr... 40 3.8
26emb|CR759923.6| Zebrafish DNA sequence from clone CH211-147L19 i... 40 3.8
27gb|AC091561.4| Homo sapiens chromosome 8, clone RP11-388G22, com... 40 3.8
28emb|BX950205.10| Zebrafish DNA sequence from clone CH211-226H8 i... 40 3.8
29gb|AC092670.2| Homo sapiens BAC clone RP11-586D5 from 4, complet... 40 3.8
30gb|AC010387.5| Homo sapiens chromosome 5 clone CTD-2074D8, compl... 40 3.8
31emb|CR388161.7| Zebrafish DNA sequence from clone CH211-288B17 i... 40 3.8
32dbj|AK032510.1| Mus musculus adult male olfactory brain cDNA, RI... 40 3.8
33dbj|AK043710.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ... 40 3.8
34dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
35gb|AC012005.4|AC012005 Homo sapiens clone RP11-533E23, complete ... 40 3.8
36gb|AC136309.9| Homo sapiens chromosome 11, clone RP11-242C5, com... 40 3.8
37gb|AC006328.5|AC006328 Homo sapiens BAC clone RP11-102O5 from Y,... 40 3.8
38ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P... 40 3.8
39gb|AC131281.7| Homo sapiens chromosome 8, clone RP11-585F1, comp... 40 3.8
40gb|AF281920.1|AF281920 Homo sapiens clone 16qtel_c53bt7 sequence 40 3.8
41gb|AC138033.1| Homo sapiens chromosome 5 clone XXcos-B22C66, com... 40 3.8
42gb|AC137934.1| Homo sapiens chromosome 16 clone XXcos-yA11c16, c... 40 3.8
43gb|AC114498.2| Homo sapiens chromosome 1 clone RP5-857K21, compl... 40 3.8
44gb|AC130223.2| Homo sapiens cosmid clone XXcos-2003C17 from 2, c... 40 3.8
45gb|AC134873.2| Homo sapiens cosmid clone XXcos-2003C15 from 2, c... 40 3.8
46dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome 40 3.8
47dbj|AP005810.4| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
48dbj|AP003863.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
49emb|BX649379.10| Human DNA sequence from clone RP5-1040D10 on ch... 40 3.8
50emb|AL928649.7| Zebrafish DNA sequence from clone DKEY-71J7, com... 40 3.8
51emb|AJ487038.1|CAR487038 Cicer arietinum partial mRNA for fructo... 40 3.8
52gb|AC137743.3| Mus musculus BAC clone RP24-469M15 from 6, comple... 40 3.8
53emb|BX950194.9| Zebrafish DNA sequence from clone CH211-218C6 in... 40 3.8
54emb|CR354607.12| Zebrafish DNA sequence from clone CH211-278G15 ... 40 3.8
55dbj|AP006222.1| Homo sapiens genomic DNA, chromosome Un, clone:C... 40 3.8
56emb|AL929192.16| Zebrafish DNA sequence from clone CH211-250E5 i... 40 3.8
57emb|AL845428.5| Zebrafish DNA sequence from clone CH211-133D24 i... 40 3.8
58emb|AL844530.7| Mouse DNA sequence from clone RP23-248L2 on chro... 40 3.8
59emb|AL136038.5|CNS01DVT Human chromosome 14 DNA sequence BAC C-2... 40 3.8 
>ref|NM_190249.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 972

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                       
Query: 214 tgggcaatgaagggattgcccctttcttcggggcggtgattgctccacatgcgttggcaa 273
           |||||| ||| ||||||||||||||||| | ||||||||||||||| || || |||||||
Sbjct: 934 tgggcagtgatgggattgcccctttctttgtggcggtgattgctccgcacgcattggcaa 875

               
Query: 274 attt 277
           ||||
Sbjct: 874 attt 871
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                            
Query: 214      tgggcaatgaagggattgcccctttcttcggggcggtgattgctccacatgcgttggcaa 273
                |||||| ||| ||||||||||||||||| | ||||||||||||||| || || |||||||
Sbjct: 38878635 tgggcagtgatgggattgcccctttctttgtggcggtgattgctccgcacgcattggcaa 38878694

                    
Query: 274      attt 277
                ||||
Sbjct: 38878695 attt 38878698



 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                    
Query: 106      tgctcctgatccagaacagcgtacaatacaatttgc 141
                ||||||||||||||| |||| |||||||||||||||
Sbjct: 38878523 tgctcctgatccagatcagcatacaatacaatttgc 38878558
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>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1078G07
          Length = 199457

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                          
Query: 214    tgggcaatgaagggattgcccctttcttcggggcggtgattgctccacatgcgttggcaa 273
              |||||| ||| ||||||||||||||||| | ||||||||||||||| || || |||||||
Sbjct: 151517 tgggcagtgatgggattgcccctttctttgtggcggtgattgctccgcacgcattggcaa 151576

                  
Query: 274    attt 277
              ||||
Sbjct: 151577 attt 151580



 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                  
Query: 106    tgctcctgatccagaacagcgtacaatacaatttgc 141
              ||||||||||||||| |||| |||||||||||||||
Sbjct: 151405 tgctcctgatccagatcagcatacaatacaatttgc 151440
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>gb|AF429948.1| Oryza sativa putative fructokinase I mRNA, complete cds
          Length = 1135

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                       
Query: 214 tgggcaatgaagggattgcccctttcttcggggcggtgattgctccacatgcgttggcaa 273
           |||||| ||| ||||||||||||||||| | ||||||||||||||| || || |||||||
Sbjct: 995 tgggcagtgatgggattgcccctttctttgtggcggtgattgctccgcacgcattggcaa 936

               
Query: 274 attt 277
           ||||
Sbjct: 935 attt 932



 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 106  tgctcctgatccagaacagcgtacaatacaatttgc 141
            ||||||||||||||| |||| |||||||||||||||
Sbjct: 1107 tgctcctgatccagatcagcatacaatacaatttgc 1072
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>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0696G06
          Length = 142571

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                         
Query: 214   tgggcaatgaagggattgcccctttcttcggggcggtgattgctccacatgcgttggcaa 273
             |||||| ||| ||||||||||||||||| | ||||||||||||||| || || |||||||
Sbjct: 43421 tgggcagtgatgggattgcccctttctttgtggcggtgattgctccgcacgcattggcaa 43480

                 
Query: 274   attt 277
             ||||
Sbjct: 43481 attt 43484



 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                 
Query: 106   tgctcctgatccagaacagcgtacaatacaatttgc 141
             ||||||||||||||| |||| |||||||||||||||
Sbjct: 43309 tgctcctgatccagatcagcatacaatacaatttgc 43344
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>dbj|AK120887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023029D05, full
           insert sequence
          Length = 1216

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                       
Query: 214 tgggcaatgaagggattgcccctttcttcggggcggtgattgctccacatgcgttggcaa 273
           |||||| ||| ||||||||||||||||| | ||||||||||||||| || || |||||||
Sbjct: 800 tgggcagtgatgggattgcccctttctttgtggcggtgattgctccgcacgcattggcaa 741

               
Query: 274 attt 277
           ||||
Sbjct: 740 attt 737



 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                               
Query: 106 tgctcctgatccagaacagcgtacaatacaatttgc 141
           ||||||||||||||| |||| |||||||||||||||
Sbjct: 912 tgctcctgatccagatcagcatacaatacaatttgc 877
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>dbj|AK060500.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-F08, full
            insert sequence
          Length = 1380

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                        
Query: 214  tgggcaatgaagggattgcccctttcttcggggcggtgattgctccacatgcgttggcaa 273
            |||||| ||| ||||||||||||||||| | ||||||||||||||| || || |||||||
Sbjct: 1156 tgggcagtgatgggattgcccctttctttgtggcggtgattgctccgcacgcattggcaa 1097

                
Query: 274  attt 277
            ||||
Sbjct: 1096 attt 1093



 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 106  tgctcctgatccagaacagcgtacaatacaatttgc 141
            ||||||||||||||| |||| |||||||||||||||
Sbjct: 1268 tgctcctgatccagatcagcatacaatacaatttgc 1233
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>gb|AY104222.1| Zea mays PCO070293 mRNA sequence
          Length = 1331

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 214  tgggcaatgaagggattgcccctttcttcggggcggtgattgctccaca 262
            ||||||| || ||||| || || ||||||| ||||||||||||||||||
Sbjct: 1040 tgggcaaagacgggatcgcacccttcttcgtggcggtgattgctccaca 992
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>ref|NM_127294.3| Arabidopsis thaliana protein binding / transcription regulator
            AT2G17390 mRNA, complete cds
          Length = 1427

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 20   ttgcaatcacaaacaaaaaaccctta 45
            ||||||||||||| ||||||||||||
Sbjct: 1366 ttgcaatcacaaagaaaaaaccctta 1391
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>gb|AC004895.2| Homo sapiens PAC clone RP4-810E6 from 7, complete sequence
          Length = 152927

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 28     acaaacaaaaaacccttagtaa 49
              ||||||||||||||||||||||
Sbjct: 117265 acaaacaaaaaacccttagtaa 117286
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>gb|AY142547.1| Arabidopsis thaliana clone RAFL08-16-B13 (R11303) mRNA sequence
          Length = 1683

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 20   ttgcaatcacaaacaaaaaaccctta 45
            ||||||||||||| ||||||||||||
Sbjct: 1606 ttgcaatcacaaagaaaaaaccctta 1631
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>gb|AC002329.2|AC002329 Arabidopsis thaliana chromosome II section 100 of 255 of the complete
             sequence. Sequence from clones T23A1, F5J6, MJB20
          Length = 76170

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 20    ttgcaatcacaaacaaaaaaccctta 45
             ||||||||||||| ||||||||||||
Sbjct: 58794 ttgcaatcacaaagaaaaaaccctta 58819
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>gb|AC116501.7| Mus musculus chromosome 5, clone RP24-300D7, complete sequence
          Length = 174365

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 28     acaaacaaaaaacccttagta 48
              |||||||||||||||||||||
Sbjct: 131954 acaaacaaaaaacccttagta 131974
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>gb|AC125024.6| Mus musculus chromosome 5, clone RP24-320B23, complete sequence
          Length = 192305

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 28    acaaacaaaaaacccttagta 48
             |||||||||||||||||||||
Sbjct: 28605 acaaacaaaaaacccttagta 28625
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>gb|AC112030.4| Rattus norvegicus 4 BAC CH230-100K8 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 237374

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 60     ggcaaaacaaaaaggcaagca 80
              |||||||||||||||||||||
Sbjct: 114060 ggcaaaacaaaaaggcaagca 114040
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>emb|AL353802.14| Human DNA sequence from clone RP4-662P1 on chromosome 1p31.3-32.3
             Contains part of the gene for InaD-like protein (INADL),
             complete sequence
          Length = 143226

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    acaaacaaaaaacccttagta 48
             |||||||||||||||||||||
Sbjct: 26752 acaaacaaaaaacccttagta 26732
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>gb|AC055120.5| Homo sapiens BAC clone RP11-336N6 from 4, complete sequence
          Length = 178524

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 28     acaaacaaaaaacccttagta 48
              |||||||||||||||||||||
Sbjct: 105081 acaaacaaaaaacccttagta 105061
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>gb|AC118025.18| Mus musculus chromosome 6, clone RP23-461L9, complete sequence
          Length = 198895

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    aacaaaaaacccttagtaaa 50
             ||||||||||||||||||||
Sbjct: 37569 aacaaaaaacccttagtaaa 37588
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>gb|AC113599.10| Mus musculus chromosome 18, clone RP23-5D23, complete sequence
          Length = 217989

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 63     aaaacaaaaaggcaagcaggggta 86
              |||||||||||| |||||||||||
Sbjct: 168178 aaaacaaaaaggaaagcaggggta 168155
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>emb|BX927068.14| Zebrafish DNA sequence from clone CH211-152F2 in linkage group 1,
              complete sequence
          Length = 150851

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    gcatttacgccttctccatc 191
              ||||||||||||||||||||
Sbjct: 100104 gcatttacgccttctccatc 100085
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>gb|AC113010.10| Mus musculus chromosome 18, clone RP23-172F6, complete sequence
          Length = 246921

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 63    aaaacaaaaaggcaagcaggggta 86
             |||||||||||| |||||||||||
Sbjct: 71215 aaaacaaaaaggaaagcaggggta 71192
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>gb|AC095563.7| Rattus norvegicus 9 BAC CH230-7G11 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 237247

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     gcaaaacaaaaaggcaagca 80
              ||||||||||||||||||||
Sbjct: 161972 gcaaaacaaaaaggcaagca 161991
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>emb|AL732372.15| Human DNA sequence from clone RP4-669L17 on chromosome 1 Contains five
             novel genes, two novel pseudogenes and the gene for a
             novel protein similar to the olfactory receptor family,
             complete sequence
          Length = 153649

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    aatagggcaaaacaaaaagg 74
             ||||||||||||||||||||
Sbjct: 96005 aatagggcaaaacaaaaagg 95986
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>emb|AL627309.15| Human DNA sequence from clone RP11-34P13 on chromosome 1 Contains a
             pseudogene similar to part of DEAD/H box polypeptide 11
             (CHL1-like helicase homolog, S. cerevisiae) (DDX11), two
             novel pseudogenes, nine novel genes, two novel proteins
             similar to the olfactory receptor family, a capicua
             homolog (Drosophila) (CIC) pseudogene and two CpG islands,
             complete sequence
          Length = 166904

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    aatagggcaaaacaaaaagg 74
             ||||||||||||||||||||
Sbjct: 84660 aatagggcaaaacaaaaagg 84679
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>emb|AL672310.3| Human DNA sequence from clone RP11-226I21 on chromosome 6 Contains
             putative novel gene, complete sequence
          Length = 53890

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    aatagggcaaaacaaaaagg 74
             ||||||||||||||||||||
Sbjct: 41891 aatagggcaaaacaaaaagg 41872
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>emb|CR759923.6| Zebrafish DNA sequence from clone CH211-147L19 in linkage group 21,
             complete sequence
          Length = 147564

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   gcatttacgccttctccatc 191
             ||||||||||||||||||||
Sbjct: 17368 gcatttacgccttctccatc 17349
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>gb|AC091561.4| Homo sapiens chromosome 8, clone RP11-388G22, complete sequence
          Length = 191037

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    acaaacaaaaaacccttagt 47
             ||||||||||||||||||||
Sbjct: 38768 acaaacaaaaaacccttagt 38787
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>emb|BX950205.10| Zebrafish DNA sequence from clone CH211-226H8 in linkage group 22,
             complete sequence
          Length = 198379

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   gcatttacgccttctccatc 191
             ||||||||||||||||||||
Sbjct: 22228 gcatttacgccttctccatc 22247
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>gb|AC092670.2| Homo sapiens BAC clone RP11-586D5 from 4, complete sequence
          Length = 157951

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 55   aatagggcaaaacaaaaagg 74
            ||||||||||||||||||||
Sbjct: 4496 aatagggcaaaacaaaaagg 4477
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>gb|AC010387.5| Homo sapiens chromosome 5 clone CTD-2074D8, complete sequence
          Length = 173414

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 5      ttattcaaataagaattgcaatca 28
              ||||||||||||||||| ||||||
Sbjct: 160144 ttattcaaataagaattccaatca 160167
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>emb|CR388161.7| Zebrafish DNA sequence from clone CH211-288B17 in linkage group 18,
             complete sequence
          Length = 80508

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   gcatttacgccttctccatc 191
             ||||||||||||||||||||
Sbjct: 52938 gcatttacgccttctccatc 52919
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>dbj|AK032510.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
            enriched library, clone:6430575D21 product:hypothetical
            Microbodies C-terminal targeting signal/CUB domain/Low
            density lipoprotein (LDL)-receptor class A (LDLRA) domain
            containing protein, full insert sequence
          Length = 2399

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 63   aaaacaaaaaggcaagcaggggta 86
            |||||||||||| |||||||||||
Sbjct: 2097 aaaacaaaaaggaaagcaggggta 2074
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>dbj|AK043710.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched
            library, clone:A830022O03 product:hypothetical
            Microbodies C-terminal targeting signal/LDL-receptor
            class A (LDLRA) domain profile/CUB domain/Low density
            lipoprotein (LDL)-receptor class A (LDLRA) domain/CUB
            domain profile containing protein, full insert sequence
          Length = 3803

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 63   aaaacaaaaaggcaagcaggggta 86
            |||||||||||| |||||||||||
Sbjct: 2566 aaaacaaaaaggaaagcaggggta 2543
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 178      acgccttctccatcagccgc 197
                ||||||||||||||||||||
Sbjct: 21091482 acgccttctccatcagccgc 21091501
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>gb|AC012005.4|AC012005 Homo sapiens clone RP11-533E23, complete sequence
          Length = 189557

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     aatagggcaaaacaaaaagg 74
              ||||||||||||||||||||
Sbjct: 126773 aatagggcaaaacaaaaagg 126754
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>gb|AC136309.9| Homo sapiens chromosome 11, clone RP11-242C5, complete sequence
          Length = 150642

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    aatagggcaaaacaaaaagg 74
             ||||||||||||||||||||
Sbjct: 28393 aatagggcaaaacaaaaagg 28412
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>gb|AC006328.5|AC006328 Homo sapiens BAC clone RP11-102O5 from Y, complete sequence
          Length = 177769

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    aatagggcaaaacaaaaagg 74
             ||||||||||||||||||||
Sbjct: 13803 aatagggcaaaacaaaaagg 13822
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>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 55      aatagggcaaaacaaaaagg 74
               ||||||||||||||||||||
Sbjct: 3536154 aatagggcaaaacaaaaagg 3536173



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 55      aatagggcaaaacaaaaagg 74
               ||||||||||||||||||||
Sbjct: 2512224 aatagggcaaaacaaaaagg 2512205
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>gb|AC131281.7| Homo sapiens chromosome 8, clone RP11-585F1, complete sequence
          Length = 120139

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    aatagggcaaaacaaaaagg 74
             ||||||||||||||||||||
Sbjct: 97614 aatagggcaaaacaaaaagg 97595
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>gb|AF281920.1|AF281920 Homo sapiens clone 16qtel_c53bt7 sequence
          Length = 485

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  aatagggcaaaacaaaaagg 74
           ||||||||||||||||||||
Sbjct: 266 aatagggcaaaacaaaaagg 285
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>gb|AC138033.1| Homo sapiens chromosome 5 clone XXcos-B22C66, complete sequence
          Length = 38954

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    aatagggcaaaacaaaaagg 74
             ||||||||||||||||||||
Sbjct: 16751 aatagggcaaaacaaaaagg 16770
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>gb|AC137934.1| Homo sapiens chromosome 16 clone XXcos-yA11c16, complete sequence
          Length = 35141

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    aatagggcaaaacaaaaagg 74
             ||||||||||||||||||||
Sbjct: 18550 aatagggcaaaacaaaaagg 18531
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>gb|AC114498.2| Homo sapiens chromosome 1 clone RP5-857K21, complete sequence
          Length = 121664

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    aatagggcaaaacaaaaagg 74
             ||||||||||||||||||||
Sbjct: 55375 aatagggcaaaacaaaaagg 55394
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>gb|AC130223.2| Homo sapiens cosmid clone XXcos-2003C17 from 2, complete sequence
          Length = 16515

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    aatagggcaaaacaaaaagg 74
             ||||||||||||||||||||
Sbjct: 12598 aatagggcaaaacaaaaagg 12579
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>gb|AC134873.2| Homo sapiens cosmid clone XXcos-2003C15 from 2, complete sequence
          Length = 36966

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  aatagggcaaaacaaaaagg 74
           ||||||||||||||||||||
Sbjct: 898 aatagggcaaaacaaaaagg 917
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>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 207     ttttccttgggcaatgaagg 226
               ||||||||||||||||||||
Sbjct: 1846615 ttttccttgggcaatgaagg 1846634
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>dbj|AP005810.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0696F12
          Length = 165227

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   acgccttctccatcagccgc 197
             ||||||||||||||||||||
Sbjct: 12843 acgccttctccatcagccgc 12862
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>dbj|AP003863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1058_A12
          Length = 152269

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    acgccttctccatcagccgc 197
              ||||||||||||||||||||
Sbjct: 134781 acgccttctccatcagccgc 134800
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>emb|BX649379.10| Human DNA sequence from clone RP5-1040D10 on chromosome 1, complete
             sequence
          Length = 93321

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    aatagggcaaaacaaaaagg 74
             ||||||||||||||||||||
Sbjct: 38056 aatagggcaaaacaaaaagg 38037
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>emb|AL928649.7| Zebrafish DNA sequence from clone DKEY-71J7, complete sequence
          Length = 208129

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 172  gcatttacgccttctccatc 191
            ||||||||||||||||||||
Sbjct: 8890 gcatttacgccttctccatc 8909
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>emb|AJ487038.1|CAR487038 Cicer arietinum partial mRNA for fructokinase-like protein, clone
           CanPFKB
          Length = 972

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 252 attgctccacatgcgttggcaaatttga 279
           |||||||||||||| || ||||||||||
Sbjct: 642 attgctccacatgcatttgcaaatttga 615
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>gb|AC137743.3| Mus musculus BAC clone RP24-469M15 from 6, complete sequence
          Length = 170200

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    aacaaaaaacccttagtaaa 50
             ||||||||||||||||||||
Sbjct: 23883 aacaaaaaacccttagtaaa 23864
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>emb|BX950194.9| Zebrafish DNA sequence from clone CH211-218C6 in linkage group 18,
             complete sequence
          Length = 122061

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 1     ttgcttattcaaataagaattgcaatca 28
             |||||||||||||  |||||||||||||
Sbjct: 87782 ttgcttattcaaaatagaattgcaatca 87809
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>emb|CR354607.12| Zebrafish DNA sequence from clone CH211-278G15 in linkage group 24,
             complete sequence
          Length = 180632

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   gcatttacgccttctccatc 191
             ||||||||||||||||||||
Sbjct: 39449 gcatttacgccttctccatc 39430
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>dbj|AP006222.1| Homo sapiens genomic DNA, chromosome Un, clone:CMC-68E4, telomere
             region, complete sequence
          Length = 40302

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    aatagggcaaaacaaaaagg 74
             ||||||||||||||||||||
Sbjct: 14091 aatagggcaaaacaaaaagg 14110
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>emb|AL929192.16| Zebrafish DNA sequence from clone CH211-250E5 in linkage group 22,
            complete sequence
          Length = 112623

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 172  gcatttacgccttctccatc 191
            ||||||||||||||||||||
Sbjct: 3855 gcatttacgccttctccatc 3874
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>emb|AL845428.5| Zebrafish DNA sequence from clone CH211-133D24 in linkage group 20,
              complete sequence
          Length = 157787

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    gcatttacgccttctccatc 191
              ||||||||||||||||||||
Sbjct: 134031 gcatttacgccttctccatc 134050
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>emb|AL844530.7| Mouse DNA sequence from clone RP23-248L2 on chromosome 2, complete
             sequence
          Length = 169779

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 61    gcaaaacaaaaaggcaagcagggg 84
             |||||||| |||||||||||||||
Sbjct: 77709 gcaaaacagaaaggcaagcagggg 77732
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>emb|AL136038.5|CNS01DVT Human chromosome 14 DNA sequence BAC C-2302E22 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 151930

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     gaaatagggcaaaacaaaaa 72
              ||||||||||||||||||||
Sbjct: 129342 gaaatagggcaaaacaaaaa 129323


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,869,931
Number of Sequences: 3902068
Number of extensions: 3869931
Number of successful extensions: 81311
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81151
Number of HSP's gapped (non-prelim): 160
length of query: 288
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 266
effective length of database: 17,147,199,772
effective search space: 4561155139352
effective search space used: 4561155139352
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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