ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast18a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
15NG4_PINTA (Q6J163) Auxin-induced protein 5NG4 120 1e-27
2YJT3_YEAST (P39542) Hypothetical protein YJL193w 33 0.21

>5NG4_PINTA (Q6J163) Auxin-induced protein 5NG4|
          Length = 410

 Score =  120 bits (302), Expect = 1e-27
 Identities = 54/69 (78%), Positives = 62/69 (89%)
 Frame = -3

Query: 418 YLIGHCLSWSGWLVLQAPVLKKYPAKLSVTSYTCFFGVIQFLIIAAFFERDAGAWVFHSG 239
           YL+G+CL+WSGW+VLQAPVLK+YPA+LSVTS+TCFFGVIQFLIIAAFFE D   W  HSG
Sbjct: 203 YLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQFLIIAAFFETDLEHWKIHSG 262

Query: 238 SEVFTILYA 212
            E+FTILYA
Sbjct: 263 GELFTILYA 271



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>YJT3_YEAST (P39542) Hypothetical protein YJL193w|
          Length = 402

 Score = 33.5 bits (75), Expect = 0.21
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = -3

Query: 415 LIGHCLSWSGWLVLQAPVLKKYPAKLSVTSYTCFFGVIQFLIIAAFFERDAGAWVFHSGS 236
           L+G CLS+  ++ L+ PVL +Y  +++ +S       +   ++   F        FH   
Sbjct: 279 LVGFCLSFGWFITLEFPVLFRYFFQINSSSTVIKAFPVSLFLLNGTFHFIQAMITFHLLG 338

Query: 235 EVFTILYAVS 206
           EV T+ Y+++
Sbjct: 339 EVSTLTYSIA 348


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,299,913
Number of Sequences: 219361
Number of extensions: 721685
Number of successful extensions: 1652
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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