ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast17h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 pr... 30 1.2
2NOTC2_RAT (Q9QW30) Neurogenic locus notch homolog protein 2 prec... 30 2.1
3ATL1E_ARATH (Q9C7E9) Putative RING-H2 finger protein ATL1E 30 2.1

>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch 2)|
            (Motch B) [Contains: Notch 2 extracellular truncation;
            Notch 2 intracellular domain]
          Length = 2470

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 151  HRRSAPACCCWNLKDCSMACLSYLC 77
            H  S P C C N KDC   C S  C
Sbjct: 1357 HTDSGPRCFCLNPKDCESGCASNPC 1381



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>NOTC2_RAT (Q9QW30) Neurogenic locus notch homolog protein 2 precursor (Notch 2)|
            [Contains: Notch 2 extracellular truncation; Notch 2
            intracellular domain]
          Length = 2471

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 151  HRRSAPACCCWNLKDCSMACLSYLC 77
            H  S P C C N KDC   C S  C
Sbjct: 1359 HTASGPHCFCPNHKDCESGCASNPC 1383



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>ATL1E_ARATH (Q9C7E9) Putative RING-H2 finger protein ATL1E|
          Length = 336

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +2

Query: 161 KQYNTTSKGFTRTN--GMEVARWRCGNCRGCNHFLSRCGRK 277
           K   T  KGF+     G  +  W   NCRGC     RCG K
Sbjct: 163 KDVITEEKGFSTVPWLGNVLLEWSSPNCRGCEKESLRCGFK 203


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,381,764
Number of Sequences: 219361
Number of extensions: 616989
Number of successful extensions: 1593
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1586
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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