ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbast17g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1XYL1_ARATH (Q9S7Y7) Alpha-xylosidase precursor (EC 3.2.1.-) 31 0.69
2MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac... 28 5.9

>XYL1_ARATH (Q9S7Y7) Alpha-xylosidase precursor (EC 3.2.1.-)|
          Length = 915

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 302 RGVTMEVGGLELPLGKSFTMTWNMHI 225
           + V +EV GLE+ +GK F M+W M I
Sbjct: 889 KSVMVEVRGLEMLVGKDFNMSWKMGI 914



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>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
           (High molecular weight salivary mucin MG1) (Sublingual
           gland mucin)
          Length = 5703

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 4   FHSPARLSFNG*IRVHKWCSRVTNPHTSYITDSSTMN 114
           F  P  LS         WCSR+T+P++++    S +N
Sbjct: 605 FEDPCSLSVENENYARHWCSRLTDPNSAFSRCHSIIN 641


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,233,125
Number of Sequences: 219361
Number of extensions: 539698
Number of successful extensions: 1589
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1588
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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