>RXINP_MOUSE (Q5U5Q9) Retinoid X receptor-interacting protein 110|
          Length = 727

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 8   SFMEQDRKSADTKHFWYLAEQEVCRSNHIQHMNQLGQFKDKIDETE 145
           S  E  + S  T+  W L    +C+ +H+   N+  Q K+  D  E
Sbjct: 142 SHQENTKDSGTTEGVWQLVPPSLCKGSHVSQGNEAEQRKEPWDHNE 187

>HUTG_VIBPA (Q87Q75) Formimidoylglutamase (EC 3.5.3.8) (Formiminoglutamase)|
           (Formiminoglutamate hydrolase)
          Length = 340

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 29  KSADTKHFWYLAEQEVCRSNHIQHMNQLGQFKDKID 136
           + AD  + WY+ + ++   NH  H+ QL  F D  D
Sbjct: 215 QKADELNVWYVEDSQLNYLNHSYHLTQLQHFIDDCD 250

>YNP8_CAEEL (P34561) Hypothetical protein T05G5.8|
          Length = 808

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 17/69 (24%), Positives = 34/69 (49%)
 Frame = -3

Query: 216 VRKYGAASKIRRTHFLKMTVITFPSVSSILSLNCPSWFMC*MWLLRQTSCSARYQKCFVS 37
           +  +GA   +  TH LK  +++ PS+ SI++   P+ ++        TS +A   K  + 
Sbjct: 633 ISTHGAEQLLLETHSLKTFLLSVPSIDSIINSKPPTAYV--------TSVNAALTKAEMI 684

Query: 36  ADFLSCSMK 10
              + CS++
Sbjct: 685 LKVVMCSLE 693

>IKKB_MOUSE (O88351) Inhibitor of nuclear factor kappa B kinase beta subunit|
           (EC 2.7.11.10) (I-kappa-B-kinase beta) (IkBKB)
           (IKK-beta) (IKK-B) (I-kappa-B kinase 2) (IKK2) (Nuclear
           factor NF-kappa-B inhibitor kinase beta) (NFKBIKB)
          Length = 757

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = -2

Query: 196 QQNKENSFPQNDCDYIPFRFIDFILELP*LVHVLNVVTST 77
           Q+  +  +  N C    FR +D IL L  LVHVLN+VT T
Sbjct: 287 QRGTDPQYGPNGC----FRALDDILNLK-LVHVLNMVTGT 321

>SULU_CAEEL (P46549) Serine/threonine-protein kinase SULU (EC 2.7.11.1)|
           (Protein kinase 18)
          Length = 982

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 29  KSADTKHFWYLAEQEVCRSNHIQHMNQLGQFKDKIDETE 145
           +  DT+H     + E+ R   IQH+N+L   K +  ET+
Sbjct: 716 RQMDTRHGLLSKQHEMTRDLEIQHLNELHAMKKRHLETQ 754

>IKKB_RAT (Q9QY78) Inhibitor of nuclear factor kappa B kinase beta subunit|
           (EC 2.7.11.1) (I-kappa-B-kinase beta) (IkBKB) (IKK-beta)
           (IKK-B) (I-kappa-B kinase 2) (IKK2) (Nuclear factor
           NF-kappa-B inhibitor kinase beta) (NFKBIKB)
          Length = 757

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -2

Query: 196 QQNKENSFPQNDCDYIPFRFIDFILELP*LVHVLNVVTST 77
           Q+  +  +  N C    FR +D IL L  LVH+LN+VT T
Sbjct: 287 QRGVDPQYGPNGC----FRALDDILNLK-LVHILNMVTGT 321

>IKKB_HUMAN (O14920) Inhibitor of nuclear factor kappa B kinase beta subunit|
           (EC 2.7.11.10) (I-kappa-B-kinase beta) (IkBKB)
           (IKK-beta) (IKK-B) (I-kappa-B kinase 2) (IKK2) (Nuclear
           factor NF-kappa-B inhibitor kinase beta) (NFKBIKB)
          Length = 756

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -2

Query: 196 QQNKENSFPQNDCDYIPFRFIDFILELP*LVHVLNVVTST 77
           Q+  + ++  N C    F+ +D IL L  LVH+LN+VT T
Sbjct: 287 QRGTDPTYGPNGC----FKALDDILNLK-LVHILNMVTGT 321


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,336,656
Number of Sequences: 219361
Number of extensions: 638850
Number of successful extensions: 1605
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1605
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)